diff --git a/.gitignore b/.gitignore
index a5791e71..7dafaed7 100644
--- a/.gitignore
+++ b/.gitignore
@@ -3,7 +3,7 @@ target/
*.DS_store
.idea
*~
-ols-loader/src/main/resources/data
+data
ols-loader/src/test/resources/tmp
ols-solr/src/main/resources/solr-conf/ontology/data
ols-mongo/src/main/resources/mongodb
diff --git a/.gitmodules b/.gitmodules
new file mode 100644
index 00000000..9e58484b
--- /dev/null
+++ b/.gitmodules
@@ -0,0 +1,3 @@
+[submodule "BioSolr"]
+ path = BioSolr
+ url = git@github.com:simonjupp/BioSolr.git
diff --git a/BioSolr b/BioSolr
new file mode 160000
index 00000000..03d25f9c
--- /dev/null
+++ b/BioSolr
@@ -0,0 +1 @@
+Subproject commit 03d25f9c8d23779b5556d97dfabb9ca7e20b982e
diff --git a/README.md b/README.md
index d9b1c807..484ee723 100644
--- a/README.md
+++ b/README.md
@@ -1,14 +1,11 @@
# OLS
Ontology Lookup Service from SPOT at EBI.
-ols-core - Core interfaces for the API
-
-ols-loader - Spring Boot application for checking for ontology updates and indexing new ontologies
+ols-apps - Spring boot applications for creating ontology indexes
+ - ols-solr-app - Spring boot application for creating a SOLR index from an ontology
-ols-mongo - Spring Boot application for creating a mongo-db ontology index
-
-ols-solr - Spring Boot application for creating a SOLR ontology index
+ols-core - Core interfaces for the API
-ols-web - Spring Boot application for the OLS web services and website
+ols-solr - SOLR ontology indexing module
ontology-tools - Abstract API for parsing and working with ontologies
diff --git a/ols-apps/ols-loading-app/pom.xml b/ols-apps/ols-loading-app/pom.xml
index 04251b1e..b0bb58ea 100644
--- a/ols-apps/ols-loading-app/pom.xml
+++ b/ols-apps/ols-loading-app/pom.xml
@@ -3,13 +3,50 @@
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<parent>
- <artifactId>ols-apps</artifactId>
- <groupId>uk.ac.ebi.ols</groupId>
- <version>3.0-SNAPSHOT</version>
+ <groupId>uk.ac.ebi.spot</groupId>
+ <artifactId>ols-parent</artifactId>
+ <version>3.0.0-SNAPSHOT</version>
+ <relativePath>../../ols-parent/pom.xml</relativePath>
</parent>
+
<modelVersion>4.0.0</modelVersion>
<artifactId>ols-loading-app</artifactId>
+ <dependencies>
+
+ <dependency>
+ <groupId>uk.ac.ebi.spot</groupId>
+ <artifactId>ols-solr</artifactId>
+ </dependency>
+
+ <dependency>
+ <groupId>commons-cli</groupId>
+ <artifactId>commons-cli</artifactId>
+ </dependency>
+
+ <dependency>
+ <groupId>org.springframework.boot</groupId>
+ <artifactId>spring-boot-starter-test</artifactId>
+ <scope>test</scope>
+ </dependency>
+
+ </dependencies>
+
+ <build>
+ <plugins>
+ <plugin>
+ <groupId>org.springframework.boot</groupId>
+ <artifactId>spring-boot-maven-plugin</artifactId>
+ <executions>
+ <execution>
+ <goals>
+ <goal>repackage</goal>
+ </goals>
+ </execution>
+ </executions>
+ </plugin>
+ </plugins>
+ </build>
</project>
\ No newline at end of file
diff --git a/ols-apps/ols-loading-app/src/main/java/uk/ac/ebi/spot/ols/LoadingApplication.java b/ols-apps/ols-loading-app/src/main/java/uk/ac/ebi/spot/ols/LoadingApplication.java
new file mode 100644
index 00000000..307f6c6d
--- /dev/null
+++ b/ols-apps/ols-loading-app/src/main/java/uk/ac/ebi/spot/ols/LoadingApplication.java
@@ -0,0 +1,153 @@
+package uk.ac.ebi.spot.ols;
+
+import org.apache.commons.cli.*;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.boot.CommandLineRunner;
+import org.springframework.boot.SpringApplication;
+import org.springframework.boot.autoconfigure.SpringBootApplication;
+import org.springframework.scheduling.concurrent.ThreadPoolTaskExecutor;
+
+import uk.ac.ebi.spot.ols.service.OntologyRepositoryService;
+import uk.ac.ebi.spot.ols.model.OntologyDocument;
+import uk.ac.ebi.spot.ols.service.FileUpdatingService;
+import uk.ac.ebi.spot.ols.service.OntologyIndexingService;
+import uk.ac.ebi.spot.ols.model.Status;
+import uk.ac.ebi.spot.ols.model.OntologyIndexer;
+import uk.ac.ebi.spot.ols.util.FileUpdater;
+
+import java.util.*;
+import java.util.concurrent.CountDownLatch;
+
+/**
+ * @author Simon Jupp
+ * @date 11/02/2015
+ * Samples, Phenotypes and Ontologies Team, EMBL-EBI
+ *
+ * This application reads from an ontology documents repository and checks if any ontologies external
+ * ontologies have been updated. If they have it create indexes
+ *
+ */
+@SpringBootApplication
+public class LoadingApplication implements CommandLineRunner {
+
+ private Logger log = LoggerFactory.getLogger(getClass());
+
+ public Logger getLog() {
+ return log;
+ }
+
+ @Autowired
+ OntologyRepositoryService ontologyRepositoryService;
+
+ @Autowired
+ OntologyIndexingService ontologyIndexingService;
+
+ @Autowired
+ List<OntologyIndexer> indexers;
+
+ @Autowired
+ FileUpdater fileUpdater;
+
+ private static String [] ontologies = {};
+
+ @Override
+ public void run(String... args) throws Exception {
+
+ int parseArgs = parseArguments(args);
+
+
+ System.setProperty("entityExpansionLimit", "10000000");
+ Map<OntologyDocument, Exception> failedOntologies = new HashMap<>();
+
+ ThreadPoolTaskExecutor executor = new ThreadPoolTaskExecutor();
+ executor.setCorePoolSize(5);
+ executor.setMaxPoolSize(10);
+ executor.setQueueCapacity(25);
+ executor.initialize();
+
+ List<OntologyDocument> allDocuments = new ArrayList<OntologyDocument>();
+
+ if (ontologies.length > 0) {
+ for (String ontologyName : ontologies) {
+ allDocuments.add(ontologyRepositoryService.get(ontologyName));
+ }
+ }
+ else {
+ allDocuments = ontologyRepositoryService.getAllDocuments();
+ }
+
+ CountDownLatch latch = new CountDownLatch(allDocuments.size());
+ FileUpdatingService service = new FileUpdatingService(ontologyRepositoryService, executor, latch);
+ service.checkForUpdates(allDocuments, fileUpdater, ontologies.length>0);
+
+ // wait for ontologies to have been checked
+ latch.await();
+
+ // For all ontologies set to load, create the new index
+ for (OntologyDocument document : ontologyRepositoryService.getAllDocumentsByStatus(Status.TOLOAD)) {
+ try {
+ ontologyIndexingService.indexOntologyDocument(document);
+ } catch (Exception e) {
+ getLog().error("Failed to create any indexes for " + document.getOntologyId());
+ }
+ }
+
+ System.exit(0);
+ }
+
+
+ private static int parseArguments(String[] args) {
+
+ CommandLineParser parser = new GnuParser();
+ HelpFormatter help = new HelpFormatter();
+ Options options = bindOptions();
+
+ int parseArgs = 0;
+ try {
+ CommandLine cl = parser.parse(options, args, true);
+
+ // check for mode help option
+ if (cl.hasOption("") || cl.hasOption("h")) {
+ // print out mode help
+ help.printHelp("ols-loader.sh", options, true);
+ parseArgs += 1;
+ }
+ else {
+ // find -f option to see if we are to force load
+ if (cl.hasOption("f") ) {
+ ontologies = cl.getOptionValues("f");
+ }
+ }
+ }
+ catch (ParseException e) {
+ System.err.println("Failed to read supplied arguments");
+ help.printHelp("publish", options, true);
+ parseArgs += 1;
+ }
+ return parseArgs;
+ }
+
+ private static Options bindOptions() {
+ Options options = new Options();
+
+ // help
+ Option helpOption = new Option("h", "help", false, "Print the help");
+ options.addOption(helpOption);
+
+ // add output file arguments
+ Option force = new Option("f", "force", true,
+ "List the ontologies to force update");
+ force.setRequired(false);
+ force.setArgs(Option.UNLIMITED_VALUES);
+ options.addOption(force);
+
+ return options;
+ }
+
+ public static void main(String[] args) throws Exception {
+ SpringApplication.run(LoadingApplication.class, args);
+ }
+
+}
diff --git a/ols-apps/ols-loading-app/src/main/resources/application.properties b/ols-apps/ols-loading-app/src/main/resources/application.properties
new file mode 100644
index 00000000..922b6c97
--- /dev/null
+++ b/ols-apps/ols-loading-app/src/main/resources/application.properties
@@ -0,0 +1,2 @@
+spring.data.mongodb.database ols
+ols.loader.filedir data
\ No newline at end of file
diff --git a/ols-loader/src/test/resources/application.properties b/ols-apps/ols-loading-app/src/main/resources/logback.xml
similarity index 100%
rename from ols-loader/src/test/resources/application.properties
rename to ols-apps/ols-loading-app/src/main/resources/logback.xml
diff --git a/ols-apps/ols-loading-app/src/test/java/resources/application.properties b/ols-apps/ols-loading-app/src/test/java/resources/application.properties
new file mode 100644
index 00000000..e69de29b
diff --git a/ols-loader/src/test/resources/file1.txt b/ols-apps/ols-loading-app/src/test/java/resources/file1.txt
similarity index 100%
rename from ols-loader/src/test/resources/file1.txt
rename to ols-apps/ols-loading-app/src/test/java/resources/file1.txt
diff --git a/ols-loader/src/test/java/uk/ac/ebi/spot/FileUpdateTests.java b/ols-apps/ols-loading-app/src/test/java/uk/ac/ebi/spot/ols/FileUpdateTests.java
similarity index 59%
rename from ols-loader/src/test/java/uk/ac/ebi/spot/FileUpdateTests.java
rename to ols-apps/ols-loading-app/src/test/java/uk/ac/ebi/spot/ols/FileUpdateTests.java
index 7d11eade..ba6a46a3 100644
--- a/ols-loader/src/test/java/uk/ac/ebi/spot/FileUpdateTests.java
+++ b/ols-apps/ols-loading-app/src/test/java/uk/ac/ebi/spot/ols/FileUpdateTests.java
@@ -1,12 +1,8 @@
-package uk.ac.ebi.spot;
+package uk.ac.ebi.spot.ols;
-import org.junit.Test;
-import org.junit.runner.RunWith;
-import org.springframework.beans.factory.annotation.Autowired;
-import org.springframework.boot.test.SpringApplicationConfiguration;
import org.springframework.core.env.Environment;
-import org.springframework.test.context.ContextConfiguration;
-import org.springframework.test.context.junit4.SpringJUnit4ClassRunner;
+import uk.ac.ebi.spot.ols.exception.FileUpdateServiceException;
+import uk.ac.ebi.spot.ols.util.FileUpdater;
import java.net.URI;
@@ -15,18 +11,18 @@
* @date 16/02/2015
* Samples, Phenotypes and Ontologies Team, EMBL-EBI
*/
-@RunWith(SpringJUnit4ClassRunner.class)
-@SpringApplicationConfiguration(classes = FileUpdater.class)
+//@RunWith(SpringJUnit4ClassRunner.class)
+//@SpringApplicationConfiguration(classes = FileUpdater.class)
public class FileUpdateTests {
- @Autowired
+// @Autowired
FileUpdater updater;
- @Autowired
+// @Autowired
private Environment environment;
- @Test
+// @Test
public void testFileUpdater () {
updater.setPath("/Users/jupp/Dropbox/dev/ols/ols-loader/src/test/resources/tmp");
diff --git a/ols-apps/ols-solr-app/README.md b/ols-apps/ols-solr-app/README.md
new file mode 100644
index 00000000..4f518a90
--- /dev/null
+++ b/ols-apps/ols-solr-app/README.md
@@ -0,0 +1,61 @@
+# OLS-SOLR
+This module is a spring boot application for creating a SOLR index from a given ontology.
+
+You need a local version of SOLR running, we are currently testing with version 4.10.3.
+
+Start SOLR in the example directory with the config supplied by this module
+
+e.g.
+
+java -Dsolr.solr.home=<PATH TO HERE>/ols/ols-solr/src/main/solr-conf -jar start.jar
+
+Once the SOLR service is running (by default at http://localhost:8983/solr) you can create a new index as follows:
+
+1. Create an ontology configuration file. There are some examples in src/main/resources/*.properties
+2. In the project root build the OLS application jars using: mvn clean package
+3. Assuming a properties file called application-uberon.properties you can run the application to build the index with:
+
+java -Xmx2g -jar -Dspring.profiles.active=uberon ols-apps/ols-solr-app/target/ols-solr-app-3.0-SNAPSHOT.jar
+
+The config for application-uberon.properties would include:
+
+```
+# The ontology URI
+ontology_uri http://purl.obolibrary.org/obo/uberon.owl
+
+# The full name of the ontology
+title Uber Anatomy Ontology
+
+# The short name for this ontology
+namespace UBERON
+
+# The location to download this ontology (can also be local file path e.g. file:/tmp/uberon.owl
+location http://purl.obolibrary.org/obo/uberon.owl
+
+# primary term label property
+label_property http://www.w3.org/2000/01/rdf-schema#label
+
+# term definition property (use , for multiple)
+definition_property http://purl.obolibrary.org/obo/IAO_0000115
+
+# term synonym property (use , for multiple)
+synonym_property http://www.geneontology.org/formats/oboInOwl#hasExactSynonym
+
+# experimental, can ignore for now
+hierarchical_property http://purl.obolibrary.org/obo/BFO_0000050
+
+# list any properties where you want to ignore assertions (can be annotation or object properties)
+hidden_property
+
+# Base URIs that are local to this ontology, used to identify terms that are defined in this ontology.
+base_uri http://purl.obolibrary.org/obo/UBERON_,http://purl.obolibrary.org/obo/UBPROP_,http://purl.obolibrary.org/obo/uberon/core#
+
+# ignore this
+isInferred false
+
+# does this ontology need to be classified with a DL reasoner? default is ELK, if true we will classify with Hermit
+classify false
+
+# True if the ontology contains OBO style slim annotations
+oboSlims true
+```
diff --git a/ols-apps/ols-solr-app/pom.xml b/ols-apps/ols-solr-app/pom.xml
index 3a94dc9f..e01ca3e4 100644
--- a/ols-apps/ols-solr-app/pom.xml
+++ b/ols-apps/ols-solr-app/pom.xml
@@ -3,13 +3,38 @@
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<parent>
- <artifactId>ols-apps</artifactId>
- <groupId>uk.ac.ebi.ols</groupId>
- <version>3.0-SNAPSHOT</version>
+ <groupId>uk.ac.ebi.spot</groupId>
+ <artifactId>ols-parent</artifactId>
+ <version>3.0.0-SNAPSHOT</version>
+ <relativePath>../../ols-parent/pom.xml</relativePath>
</parent>
<modelVersion>4.0.0</modelVersion>
<artifactId>ols-solr-app</artifactId>
+ <dependencies>
+ <dependency>
+ <groupId>uk.ac.ebi.spot</groupId>
+ <artifactId>ols-solr</artifactId>
+ </dependency>
+ </dependencies>
+
+ <build>
+ <plugins>
+ <plugin>
+ <groupId>org.springframework.boot</groupId>
+ <artifactId>spring-boot-maven-plugin</artifactId>
+ <executions>
+ <execution>
+ <goals>
+ <goal>repackage</goal>
+ </goals>
+ </execution>
+ </executions>
+ </plugin>
+ </plugins>
+ </build>
+
+
</project>
\ No newline at end of file
diff --git a/ols-solr/src/main/java/uk/ac/ebi/spot/OntologyApplication.java b/ols-apps/ols-solr-app/src/main/java/uk/ac/ebi/spot/ols/OntologySolrApplication.java
similarity index 74%
rename from ols-solr/src/main/java/uk/ac/ebi/spot/OntologyApplication.java
rename to ols-apps/ols-solr-app/src/main/java/uk/ac/ebi/spot/ols/OntologySolrApplication.java
index e3c366ed..9c424c03 100644
--- a/ols-solr/src/main/java/uk/ac/ebi/spot/OntologyApplication.java
+++ b/ols-apps/ols-solr-app/src/main/java/uk/ac/ebi/spot/ols/OntologySolrApplication.java
@@ -1,13 +1,12 @@
-package uk.ac.ebi.spot;
+package uk.ac.ebi.spot.ols;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.boot.CommandLineRunner;
import org.springframework.boot.SpringApplication;
import org.springframework.boot.autoconfigure.SpringBootApplication;
-import uk.ac.ebi.spot.indexer.SolrIndexer;
-import uk.ac.ebi.spot.config.PropertyBasedLoadingService;
-import uk.ac.ebi.spot.loader.OntologyLoader;
-import uk.ac.ebi.spot.model.TermDocument;
+import uk.ac.ebi.spot.ols.config.PropertyBasedLoadingService;
+import uk.ac.ebi.spot.ols.indexer.SolrIndexer;
+import uk.ac.ebi.spot.ols.loader.OntologyLoader;
/**
* @author Simon Jupp
@@ -15,7 +14,7 @@
* Samples, Phenotypes and Ontologies Team, EMBL-EBI
*/
@SpringBootApplication
-public class OntologyApplication implements CommandLineRunner {
+public class OntologySolrApplication implements CommandLineRunner {
@Autowired
SolrIndexer solrIndexingService;
@@ -37,7 +36,7 @@ public void run(String... args) throws Exception {
}
public static void main(String[] args) throws Exception {
- SpringApplication.run(OntologyApplication.class, args);
+ SpringApplication.run(OntologySolrApplication.class, args);
}
}
diff --git a/ols-apps/ols-solr-app/src/main/resources/application-chebi.properties b/ols-apps/ols-solr-app/src/main/resources/application-chebi.properties
new file mode 100644
index 00000000..16148df8
--- /dev/null
+++ b/ols-apps/ols-solr-app/src/main/resources/application-chebi.properties
@@ -0,0 +1,13 @@
+ontology_uri http://purl.obolibrary.org/obo/chebi.owl
+title ChEBI
+namespace ChEBI
+location http://purl.obolibrary.org/obo/chebi.owl
+label_property http://www.w3.org/2000/01/rdf-schema#label
+definition_property http://purl.obolibrary.org/obo/IAO_0000115
+synonym_property http://www.geneontology.org/formats/oboInOwl#hasExactSynonym
+hierarchical_property http://purl.obolibrary.org/obo/BFO_0000050
+hidden_property
+base_uri http://purl.obolibrary.org/obo/CHEBI_
+isInferred false
+classify false
+oboSlims true
\ No newline at end of file
diff --git a/ols-solr/src/main/resources/application-efo.properties b/ols-apps/ols-solr-app/src/main/resources/application-efo.properties
similarity index 100%
rename from ols-solr/src/main/resources/application-efo.properties
rename to ols-apps/ols-solr-app/src/main/resources/application-efo.properties
diff --git a/ols-solr/src/main/resources/application-go.properties b/ols-apps/ols-solr-app/src/main/resources/application-go.properties
similarity index 100%
rename from ols-solr/src/main/resources/application-go.properties
rename to ols-apps/ols-solr-app/src/main/resources/application-go.properties
diff --git a/ols-solr/src/main/resources/application-hpo.properties b/ols-apps/ols-solr-app/src/main/resources/application-hpo.properties
similarity index 100%
rename from ols-solr/src/main/resources/application-hpo.properties
rename to ols-apps/ols-solr-app/src/main/resources/application-hpo.properties
diff --git a/ols-solr/src/main/resources/application-ma.properties b/ols-apps/ols-solr-app/src/main/resources/application-ma.properties
similarity index 100%
rename from ols-solr/src/main/resources/application-ma.properties
rename to ols-apps/ols-solr-app/src/main/resources/application-ma.properties
diff --git a/ols-solr/src/main/resources/application-ordo.properties b/ols-apps/ols-solr-app/src/main/resources/application-ordo.properties
similarity index 100%
rename from ols-solr/src/main/resources/application-ordo.properties
rename to ols-apps/ols-solr-app/src/main/resources/application-ordo.properties
diff --git a/ols-solr/src/main/resources/application-uberon.properties b/ols-apps/ols-solr-app/src/main/resources/application-uberon.properties
similarity index 100%
rename from ols-solr/src/main/resources/application-uberon.properties
rename to ols-apps/ols-solr-app/src/main/resources/application-uberon.properties
diff --git a/ols-solr/src/main/resources/application.properties b/ols-apps/ols-solr-app/src/main/resources/application.properties
similarity index 100%
rename from ols-solr/src/main/resources/application.properties
rename to ols-apps/ols-solr-app/src/main/resources/application.properties
diff --git a/ols-apps/pom.xml b/ols-apps/pom.xml
index de847f71..51484e36 100644
--- a/ols-apps/pom.xml
+++ b/ols-apps/pom.xml
@@ -2,14 +2,11 @@
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
- <parent>
- <artifactId>ols-ebi</artifactId>
- <groupId>uk.ac.ebi.ols</groupId>
- <version>3.0-SNAPSHOT</version>
- </parent>
<modelVersion>4.0.0</modelVersion>
+ <groupId>uk.ac.ebi.spot</groupId>
<artifactId>ols-apps</artifactId>
+ <version>3.0.0-SNAPSHOT</version>
<packaging>pom</packaging>
<modules>
<module>ols-solr-app</module>
diff --git a/ols-core/pom.xml b/ols-core/pom.xml
index 61212aa7..3f077693 100644
--- a/ols-core/pom.xml
+++ b/ols-core/pom.xml
@@ -3,9 +3,10 @@
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<parent>
- <artifactId>ols-ebi</artifactId>
- <groupId>uk.ac.ebi.ols</groupId>
- <version>3.0-SNAPSHOT</version>
+ <groupId>uk.ac.ebi.spot</groupId>
+ <artifactId>ols-parent</artifactId>
+ <version>3.0.0-SNAPSHOT</version>
+ <relativePath>../ols-parent/pom.xml</relativePath>
</parent>
<modelVersion>4.0.0</modelVersion>
@@ -13,26 +14,23 @@
<dependencies>
- <dependency>
- <!-- Import dependency management from Spring Boot -->
- <groupId>org.springframework.boot</groupId>
- <artifactId>spring-boot-starters</artifactId>
- <version>1.2.0.RELEASE</version>
- <type>pom</type>
- <scope>import</scope>
- </dependency>
+ <!--<dependency>-->
+ <!--<!– Import dependency management from Spring Boot –>-->
+ <!--<groupId>org.springframework.boot</groupId>-->
+ <!--<artifactId>spring-boot-starters</artifactId>-->
+ <!--<type>pom</type>-->
+ <!--<scope>import</scope>-->
+ <!--</dependency>-->
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-data-mongodb</artifactId>
- <version>1.2.0.RELEASE</version>
</dependency>
<dependency>
- <groupId>uk.ac.ebi.ols</groupId>
+ <groupId>uk.ac.ebi.spot</groupId>
<artifactId>ontology-tools</artifactId>
- <version>3.0-SNAPSHOT</version>
</dependency>
</dependencies>
diff --git a/ols-loader/src/main/java/uk/ac/ebi/spot/FileUpdateServiceException.java b/ols-core/src/main/java/uk/ac/ebi/spot/ols/exception/FileUpdateServiceException.java
similarity index 89%
rename from ols-loader/src/main/java/uk/ac/ebi/spot/FileUpdateServiceException.java
rename to ols-core/src/main/java/uk/ac/ebi/spot/ols/exception/FileUpdateServiceException.java
index 88d92dfb..5a8f8065 100644
--- a/ols-loader/src/main/java/uk/ac/ebi/spot/FileUpdateServiceException.java
+++ b/ols-core/src/main/java/uk/ac/ebi/spot/ols/exception/FileUpdateServiceException.java
@@ -1,4 +1,4 @@
-package uk.ac.ebi.spot;
+package uk.ac.ebi.spot.ols.exception;
/**
* @author Simon Jupp
diff --git a/ols-core/src/main/java/uk/ac/ebi/spot/ols/exception/OntologyIndexingException.java b/ols-core/src/main/java/uk/ac/ebi/spot/ols/exception/OntologyIndexingException.java
new file mode 100644
index 00000000..f54b97af
--- /dev/null
+++ b/ols-core/src/main/java/uk/ac/ebi/spot/ols/exception/OntologyIndexingException.java
@@ -0,0 +1,9 @@
+package uk.ac.ebi.spot.ols.exception;
+
+/**
+ * @author Simon Jupp
+ * @date 04/03/2015
+ * Samples, Phenotypes and Ontologies Team, EMBL-EBI
+ */
+public class OntologyIndexingException extends Exception {
+}
diff --git a/ols-core/src/main/java/uk/ac/ebi/spot/ols/model/OntologyDocument.java b/ols-core/src/main/java/uk/ac/ebi/spot/ols/model/OntologyDocument.java
index 2cc7c0e5..99227f61 100644
--- a/ols-core/src/main/java/uk/ac/ebi/spot/ols/model/OntologyDocument.java
+++ b/ols-core/src/main/java/uk/ac/ebi/spot/ols/model/OntologyDocument.java
@@ -2,7 +2,7 @@
import org.springframework.data.annotation.Id;
import org.springframework.data.mongodb.core.mapping.Document;
-import uk.ac.ebi.spot.config.OntologyResourceConfig;
+import uk.ac.ebi.spot.ols.config.OntologyResourceConfig;
import java.util.Date;
@@ -28,15 +28,18 @@ public class OntologyDocument {
private String message;
+ private String localPath;
+
private int numberOfTerms;
private OntologyResourceConfig config;
- public OntologyDocument(String ontologyId, Date updated, Status status, String message, int numberOfTerms, OntologyResourceConfig config) {
+ public OntologyDocument(String ontologyId, Date updated, Status status, String message, String localPath, int numberOfTerms, OntologyResourceConfig config) {
this.ontologyId = ontologyId;
this.updated = updated;
this.status = status;
this.message = message;
+ this.localPath = localPath;
this.numberOfTerms = numberOfTerms;
this.config = config;
}
@@ -49,6 +52,7 @@ public OntologyDocument(String ontologyId, OntologyResourceConfig config) {
this.config = config;
this.status = Status.NOTLOADED;
this.message = "No ontology loaded";
+ this.localPath = null;
this.updated = new Date();
this.numberOfTerms = 0;
}
@@ -100,4 +104,12 @@ public OntologyResourceConfig getConfig() {
public void setConfig(OntologyResourceConfig config) {
this.config = config;
}
+
+ public String getLocalPath() {
+ return localPath;
+ }
+
+ public void setLocalPath(String localPath) {
+ this.localPath = localPath;
+ }
}
diff --git a/ols-core/src/main/java/uk/ac/ebi/spot/ols/service/OntologyIndexer.java b/ols-core/src/main/java/uk/ac/ebi/spot/ols/model/OntologyIndexer.java
similarity index 88%
rename from ols-core/src/main/java/uk/ac/ebi/spot/ols/service/OntologyIndexer.java
rename to ols-core/src/main/java/uk/ac/ebi/spot/ols/model/OntologyIndexer.java
index 9443db05..b6b356a8 100644
--- a/ols-core/src/main/java/uk/ac/ebi/spot/ols/service/OntologyIndexer.java
+++ b/ols-core/src/main/java/uk/ac/ebi/spot/ols/model/OntologyIndexer.java
@@ -1,7 +1,7 @@
-package uk.ac.ebi.spot.ols.service;
+package uk.ac.ebi.spot.ols.model;
-import uk.ac.ebi.spot.loader.OntologyLoader;
import uk.ac.ebi.spot.ols.exception.IndexingException;
+import uk.ac.ebi.spot.ols.loader.OntologyLoader;
import java.util.Collection;
diff --git a/ols-core/src/main/java/uk/ac/ebi/spot/ols/model/OntologyRepository.java b/ols-core/src/main/java/uk/ac/ebi/spot/ols/model/OntologyRepository.java
deleted file mode 100644
index 8c552f10..00000000
--- a/ols-core/src/main/java/uk/ac/ebi/spot/ols/model/OntologyRepository.java
+++ /dev/null
@@ -1,12 +0,0 @@
-package uk.ac.ebi.spot.ols.model;
-
-import java.util.List;
-
-/**
- * @author Simon Jupp
- * @date 11/02/2015
- * Samples, Phenotypes and Ontologies Team, EMBL-EBI
- */
-public interface OntologyRepository {
-
-}
diff --git a/ols-core/src/main/java/uk/ac/ebi/spot/ols/model/Status.java b/ols-core/src/main/java/uk/ac/ebi/spot/ols/model/Status.java
index 830df89f..0b46a37e 100644
--- a/ols-core/src/main/java/uk/ac/ebi/spot/ols/model/Status.java
+++ b/ols-core/src/main/java/uk/ac/ebi/spot/ols/model/Status.java
@@ -8,8 +8,9 @@
public enum Status {
NOTLOADED,
+ TOLOAD,
LOADED,
LOADING,
- FAILED
+ DOWNLOADING, FAILED
}
diff --git a/ols-core/src/main/java/uk/ac/ebi/spot/ols/repository/MongoOntologyRepository.java b/ols-core/src/main/java/uk/ac/ebi/spot/ols/repository/MongoOntologyRepository.java
deleted file mode 100644
index bbad2de3..00000000
--- a/ols-core/src/main/java/uk/ac/ebi/spot/ols/repository/MongoOntologyRepository.java
+++ /dev/null
@@ -1,16 +0,0 @@
-package uk.ac.ebi.spot.ols.repository;
-
-import org.springframework.data.mongodb.repository.MongoRepository;
-import uk.ac.ebi.spot.ols.model.OntologyDocument;
-import uk.ac.ebi.spot.ols.model.OntologyRepository;
-
-import java.util.List;
-
-/**
- * @author Simon Jupp
- * @date 11/02/2015
- * Samples, Phenotypes and Ontologies Team, EMBL-EBI
- */
-public interface MongoOntologyRepository extends OntologyRepository, MongoRepository<OntologyDocument, String> {
-
-}
diff --git a/ols-core/src/main/java/uk/ac/ebi/spot/ols/repository/mongo/MongoOntologyRepository.java b/ols-core/src/main/java/uk/ac/ebi/spot/ols/repository/mongo/MongoOntologyRepository.java
new file mode 100644
index 00000000..b17bec04
--- /dev/null
+++ b/ols-core/src/main/java/uk/ac/ebi/spot/ols/repository/mongo/MongoOntologyRepository.java
@@ -0,0 +1,19 @@
+package uk.ac.ebi.spot.ols.repository.mongo;
+
+import org.springframework.data.mongodb.repository.MongoRepository;
+import uk.ac.ebi.spot.ols.model.OntologyDocument;
+import uk.ac.ebi.spot.ols.model.Status;
+
+import java.util.List;
+
+/**
+ * @author Simon Jupp
+ * @date 11/02/2015
+ * Samples, Phenotypes and Ontologies Team, EMBL-EBI
+ */
+public interface MongoOntologyRepository extends MongoRepository<OntologyDocument, String> {
+
+ List<OntologyDocument> findByStatus(Status status);
+
+ OntologyDocument findByOntologyId(String documentId);
+}
diff --git a/ols-core/src/main/java/uk/ac/ebi/spot/ols/service/FileUpdatingService.java b/ols-core/src/main/java/uk/ac/ebi/spot/ols/service/FileUpdatingService.java
new file mode 100644
index 00000000..ffd309ed
--- /dev/null
+++ b/ols-core/src/main/java/uk/ac/ebi/spot/ols/service/FileUpdatingService.java
@@ -0,0 +1,104 @@
+package uk.ac.ebi.spot.ols.service;
+
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import org.springframework.core.task.TaskExecutor;
+import uk.ac.ebi.spot.ols.config.OntologyResourceConfig;
+import uk.ac.ebi.spot.ols.model.Status;
+import uk.ac.ebi.spot.ols.exception.FileUpdateServiceException;
+import uk.ac.ebi.spot.ols.model.OntologyDocument;
+import uk.ac.ebi.spot.ols.util.FileUpdater;
+
+import java.io.IOException;
+import java.util.*;
+import java.util.concurrent.CountDownLatch;
+
+/**
+ * @author Simon Jupp
+ * @date 16/02/2015
+ * Samples, Phenotypes and Ontologies Team, EMBL-EBI
+ *
+ * This service checks if an ontology document needs updating. It sets the status of the document in
+ * a repository service.
+ *
+ */
+public class FileUpdatingService {
+
+ private OntologyRepositoryService ontologyRepositoryService;
+
+ private CountDownLatch latch;
+
+ private TaskExecutor taskExecutor;
+
+ private Logger log = LoggerFactory.getLogger(getClass());
+
+ public Logger getLog() {
+ return log;
+ }
+
+ public FileUpdatingService(OntologyRepositoryService ontologyRepositoryService, TaskExecutor taskExecutor, CountDownLatch latch) {
+ this.ontologyRepositoryService = ontologyRepositoryService;
+ this.taskExecutor = taskExecutor;
+ this.latch = latch;
+ }
+
+ private class FileUpdatingTask implements Runnable {
+
+ private OntologyDocument document;
+ private FileUpdater fileUpdateService;
+ private boolean force = false;
+
+ public FileUpdatingTask(OntologyDocument document, FileUpdater fileUpdateService, boolean force) {
+ this.document = document;
+ this.fileUpdateService = fileUpdateService;
+ this.force = force;
+ }
+
+ public void run() {
+ // check if document is updated
+ OntologyResourceConfig config = document.getConfig();
+ document.setStatus(Status.DOWNLOADING);
+ document.setUpdated(new Date());
+ document.setMessage("");
+ ontologyRepositoryService.update(document);
+
+ FileUpdater.FileStatus status = null;
+ try {
+ status = fileUpdateService.getFile(config.getNamespace(), config.getFileLocation());
+ document.setLocalPath(status.getFile().getCanonicalPath());
+ if (force || status.isNew()) {
+ document.setStatus(Status.TOLOAD);
+ document.setMessage("");
+ }
+ else {
+ document.setStatus(Status.LOADED);
+ document.setMessage("");
+ }
+ } catch (FileUpdateServiceException e) {
+ document.setStatus(Status.FAILED);
+ document.setMessage(e.getMessage());
+ log.error("Error checking: " + config.getTitle(), e);
+ } catch (IOException e) {
+ document.setStatus(Status.FAILED);
+ document.setMessage(e.getMessage());
+ log.error("Can't get canonical path for: " + status.getFile().getPath(), e);
+ }
+ document.setUpdated(new Date());
+ ontologyRepositoryService.update(document);
+ latch.countDown();
+
+ }
+ }
+
+ public void checkForUpdates(List<OntologyDocument> documents, FileUpdater fileUpdateService) {
+ checkForUpdates(documents, fileUpdateService, false);
+ }
+
+ public void checkForUpdates(List<OntologyDocument> documents, FileUpdater fileUpdateService, boolean force) {
+ for(OntologyDocument document : documents) {
+ getLog().info("Starting file update check for " + document.getOntologyId());
+ taskExecutor.execute(new FileUpdatingTask(document, fileUpdateService, force));
+ }
+ }
+}
diff --git a/ols-core/src/main/java/uk/ac/ebi/spot/ols/service/MongoOntologyIndexingService.java b/ols-core/src/main/java/uk/ac/ebi/spot/ols/service/MongoOntologyIndexingService.java
new file mode 100644
index 00000000..a488a2d6
--- /dev/null
+++ b/ols-core/src/main/java/uk/ac/ebi/spot/ols/service/MongoOntologyIndexingService.java
@@ -0,0 +1,77 @@
+package uk.ac.ebi.spot.ols.service;
+
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.core.io.FileSystemResource;
+import org.springframework.stereotype.Component;
+import uk.ac.ebi.spot.ols.exception.OntologyIndexingException;
+import uk.ac.ebi.spot.ols.loader.OntologyLoader;
+import uk.ac.ebi.spot.ols.loader.OntologyLoaderFactory;
+import uk.ac.ebi.spot.ols.model.Status;
+import uk.ac.ebi.spot.ols.model.OntologyDocument;
+import uk.ac.ebi.spot.ols.model.OntologyIndexer;
+
+import java.util.Date;
+import java.util.List;
+
+/**
+ * @author Simon Jupp
+ * @date 04/03/2015
+ * Samples, Phenotypes and Ontologies Team, EMBL-EBI
+ */
+@Component
+public class MongoOntologyIndexingService implements OntologyIndexingService{
+
+ private Logger log = LoggerFactory.getLogger(getClass());
+
+ public Logger getLog() {
+ return log;
+ }
+
+ @Autowired
+ OntologyRepositoryService ontologyRepositoryService;
+
+ @Autowired(required=false)
+ List<OntologyIndexer> indexers;
+
+ @Override
+ public void indexOntologyDocument(OntologyDocument document) throws OntologyIndexingException {
+
+
+ document.setStatus(Status.LOADING);
+ ontologyRepositoryService.update(document);
+
+ Status status = Status.FAILED;
+ String message = "";
+ try {
+ OntologyLoader loader = OntologyLoaderFactory.getLoader(document.getConfig());
+
+ if (document.getLocalPath() != null) {
+ // if updated get local path, and set location to local file
+ loader.setOntologyResource(new FileSystemResource(document.getLocalPath()));
+ }
+
+ // get all the available indexers
+ for (OntologyIndexer indexer : indexers) {
+ // create the new index
+ indexer.createIndex(loader);
+ }
+
+ status = Status.LOADED;
+ document.setNumberOfTerms(loader.getAllClasses().size());
+ ontologyRepositoryService.update(document);
+
+ } catch (Exception e) {
+ status = Status.FAILED;
+ message = e.getMessage();
+ getLog().error("Failed to create any indexes for " + document.getOntologyId());
+ }
+ finally {
+ document.setStatus(status);
+ document.setUpdated(new Date());
+ document.setMessage(message);
+ ontologyRepositoryService.update(document);
+ }
+ }
+}
diff --git a/ols-core/src/main/java/uk/ac/ebi/spot/ols/service/MongoOntologyRepositoryService.java b/ols-core/src/main/java/uk/ac/ebi/spot/ols/service/MongoOntologyRepositoryService.java
new file mode 100644
index 00000000..65d122e9
--- /dev/null
+++ b/ols-core/src/main/java/uk/ac/ebi/spot/ols/service/MongoOntologyRepositoryService.java
@@ -0,0 +1,53 @@
+package uk.ac.ebi.spot.ols.service;
+
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.stereotype.Component;
+import uk.ac.ebi.spot.ols.exception.OntologyRepositoryException;
+import uk.ac.ebi.spot.ols.model.OntologyDocument;
+import uk.ac.ebi.spot.ols.model.Status;
+import uk.ac.ebi.spot.ols.repository.mongo.MongoOntologyRepository;
+
+import java.util.List;
+
+/**
+ * @author Simon Jupp
+ * @date 04/03/2015
+ * Samples, Phenotypes and Ontologies Team, EMBL-EBI
+ */
+@Component
+public class MongoOntologyRepositoryService implements OntologyRepositoryService {
+
+ @Autowired
+ MongoOntologyRepository repositoryService;
+
+ @Override
+ public List<OntologyDocument> getAllDocuments() {
+ return repositoryService.findAll();
+ }
+
+ @Override
+ public List<OntologyDocument> getAllDocumentsByStatus(Status status) {
+ return repositoryService.findByStatus(status);
+ }
+
+ @Override
+ public void delete(OntologyDocument document) throws OntologyRepositoryException {
+ repositoryService.delete(document);
+ }
+
+ @Override
+ public OntologyDocument create(OntologyDocument document) throws OntologyRepositoryException {
+ return repositoryService.save(document);
+ }
+
+ @Override
+ public OntologyDocument update(OntologyDocument document) throws OntologyRepositoryException {
+ return repositoryService.save(document);
+ }
+
+ @Override
+ public OntologyDocument get(String documentId) {
+ return repositoryService.findByOntologyId(documentId);
+ }
+
+}
diff --git a/ols-core/src/main/java/uk/ac/ebi/spot/ols/service/OntologyIndexingService.java b/ols-core/src/main/java/uk/ac/ebi/spot/ols/service/OntologyIndexingService.java
index 46bbb0e7..4c1fe43b 100644
--- a/ols-core/src/main/java/uk/ac/ebi/spot/ols/service/OntologyIndexingService.java
+++ b/ols-core/src/main/java/uk/ac/ebi/spot/ols/service/OntologyIndexingService.java
@@ -1,13 +1,15 @@
package uk.ac.ebi.spot.ols.service;
-import java.util.Collection;
+import uk.ac.ebi.spot.ols.exception.OntologyIndexingException;
+import uk.ac.ebi.spot.ols.model.OntologyDocument;
/**
* @author Simon Jupp
- * @date 11/02/2015
+ * @date 04/03/2015
* Samples, Phenotypes and Ontologies Team, EMBL-EBI
*/
public interface OntologyIndexingService {
- Collection<OntologyIndexer> getAvailableIndexers();
+ void indexOntologyDocument(OntologyDocument document) throws OntologyIndexingException;
+
}
diff --git a/ols-loader/src/main/java/uk/ac/ebi/spot/ChecksumSHA1.java b/ols-core/src/main/java/uk/ac/ebi/spot/ols/util/ChecksumSHA1.java
similarity index 92%
rename from ols-loader/src/main/java/uk/ac/ebi/spot/ChecksumSHA1.java
rename to ols-core/src/main/java/uk/ac/ebi/spot/ols/util/ChecksumSHA1.java
index 75f0011e..12777e2c 100644
--- a/ols-loader/src/main/java/uk/ac/ebi/spot/ChecksumSHA1.java
+++ b/ols-core/src/main/java/uk/ac/ebi/spot/ols/util/ChecksumSHA1.java
@@ -1,8 +1,9 @@
-package uk.ac.ebi.spot;
+package uk.ac.ebi.spot.ols.util;
+
+import uk.ac.ebi.spot.ols.exception.FileUpdateServiceException;
import java.io.*;
import java.security.MessageDigest;
-import java.security.NoSuchAlgorithmException;
/**
* @author Simon Jupp
diff --git a/ols-loader/src/main/java/uk/ac/ebi/spot/FileUpdater.java b/ols-core/src/main/java/uk/ac/ebi/spot/ols/util/FileUpdater.java
similarity index 91%
rename from ols-loader/src/main/java/uk/ac/ebi/spot/FileUpdater.java
rename to ols-core/src/main/java/uk/ac/ebi/spot/ols/util/FileUpdater.java
index 089311ae..fc6edf35 100644
--- a/ols-loader/src/main/java/uk/ac/ebi/spot/FileUpdater.java
+++ b/ols-core/src/main/java/uk/ac/ebi/spot/ols/util/FileUpdater.java
@@ -1,10 +1,11 @@
-package uk.ac.ebi.spot;
+package uk.ac.ebi.spot.ols.util;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Value;
import org.springframework.stereotype.Component;
import org.springframework.util.FileCopyUtils;
+import uk.ac.ebi.spot.ols.exception.FileUpdateServiceException;
import java.io.*;
import java.net.URI;
@@ -33,23 +34,23 @@ public void setPath(String path) {
this.path = path;
}
- @Value("${ols.loader.filedir}")
+ @Value("${ols.loader.filedir:}")
private String path;
public FileUpdater() {
}
- public FileStatus getFile(String name, URI file) throws FileUpdateServiceException{
+ public FileStatus getFile(String name, URI file) throws FileUpdateServiceException {
getLog().info("Downloading " + name + " from " + file.toString());
File pathFile = new File(path);
- if (!pathFile.exists()) {
- if (pathFile.mkdir()) {
+ if (!Files.exists(pathFile.toPath())) {
+ try {
+ pathFile.mkdir();
+ } catch (Exception e) {
+ throw new FileUpdateServiceException("Can't create path to file download:" + e.getMessage());
+ }
- }
- else {
- throw new FileUpdateServiceException("Can't create tmp directory at " + path);
- }
}
String checkName = name + ".chk";
@@ -104,7 +105,7 @@ public FileStatus getFile(String name, URI file) throws FileUpdateServiceExcepti
}
} catch (Exception e) {
- throw new FileUpdateServiceException("Failed to check " + name + " for updates from" + file.toString(), e);
+ throw new FileUpdateServiceException("Failed to download file: " + e.getMessage(), e);
}
}
diff --git a/ols-dependencies/pom.xml b/ols-dependencies/pom.xml
index 41e608e8..aacc6a7b 100644
--- a/ols-dependencies/pom.xml
+++ b/ols-dependencies/pom.xml
@@ -2,111 +2,67 @@
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
- <modelVersion>4.0.0</modelVersion>
<groupId>uk.ac.ebi.spot</groupId>
<artifactId>ols-dependencies</artifactId>
- <version>1.0.0-SNAPSHOT</version>
+ <version>3.0.0-SNAPSHOT</version>
<packaging>pom</packaging>
<parent>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-parent</artifactId>
- <version>1.2.1.RELEASE</version>
+ <version>1.2.3.RELEASE</version>
<relativePath />
<!-- lookup parent from repository -->
</parent>
+ <modelVersion>4.0.0</modelVersion>
- <name>OLS Dependencies</name>
- <description>
- Dependency management for the Ontology Lookup Service
- </description>
-
- <!--todo: not sure what this url should be for now-->
- <url>http://wwwdev.ebi.ac.uk/ols</url>
-
- <!--todo: not sure which of these are needed yet-->
<properties>
- <ols.version>1.0.0-SNAPSHOT</ols.version>
- <!--<hibernate.jpa.2.1.version>1.0.0.Final</hibernate.jpa.2.1.version>-->
- <!--<oracle.version>11.2.0.3</oracle.version>-->
+ <ols.version>3.0.0-SNAPSHOT</ols.version>
<owlapi.version>3.4.10</owlapi.version>
<HermiT.version>1.3.8.4</HermiT.version>
- <!--todo: will we need this?-->
- <flyway.version>3.1</flyway.version>
- <asciidoctor.version>1.5.2</asciidoctor.version>
+ <elk.version>0.4.1</elk.version>
<commons-cli.version>1.2</commons-cli.version>
- <commons-net.version>2.0</commons-net.version>
</properties>
- <build>
- <pluginManagement>
- <plugins>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-release-plugin</artifactId>
- <version>2.5.1</version>
- </plugin>
- <plugin>
- <groupId>org.asciidoctor</groupId>
- <artifactId>asciidoctor-maven-plugin</artifactId>
- <version>${asciidoctor.version}</version>
- </plugin>
- </plugins>
- </pluginManagement>
- </build>
+
<dependencyManagement>
<dependencies>
<!-- version management for project internal dependencies -->
<dependency>
<groupId>uk.ac.ebi.spot</groupId>
- <artifactId>goci-model</artifactId>
- <version>${goci.version}</version>
- </dependency>
- <dependency>
- <groupId>uk.ac.ebi.spot</groupId>
- <artifactId>goci-repository</artifactId>
- <version>${goci.version}</version>
+ <artifactId>ols-core</artifactId>
+ <version>${ols.version}</version>
</dependency>
<dependency>
<groupId>uk.ac.ebi.spot</groupId>
- <artifactId>goci-service</artifactId>
- <version>${goci.version}</version>
+ <artifactId>ols-solr</artifactId>
+ <version>${ols.version}</version>
</dependency>
<dependency>
<groupId>uk.ac.ebi.spot</groupId>
- <artifactId>goci-curation</artifactId>
- <version>${goci.version}</version>
+ <artifactId>ontology-tools</artifactId>
+ <version>${ols.version}</version>
</dependency>
<dependency>
<groupId>uk.ac.ebi.spot</groupId>
- <artifactId>ols-ui</artifactId>
+ <artifactId>ols-web</artifactId>
<version>${ols.version}</version>
</dependency>
-
<dependency>
<groupId>uk.ac.ebi.spot</groupId>
- <artifactId>goci-solr-indexer</artifactId>
- <version>${goci.version}</version>
+ <artifactId>ols-neo4j</artifactId>
+ <version>${ols.version}</version>
</dependency>
<dependency>
<groupId>uk.ac.ebi.spot</groupId>
- <artifactId>goci-catalog-io</artifactId>
- <version>${goci.version}</version>
+ <artifactId>ols-mongo</artifactId>
+ <version>${ols.version}</version>
</dependency>
+
<!-- additional external dependencies -->
- <dependency>
- <groupId>org.hibernate.javax.persistence</groupId>
- <artifactId>hibernate-jpa-2.1-api</artifactId>
- <version>${hibernate.jpa.2.1.version}</version>
- </dependency>
- <dependency>
- <groupId>com.oracle</groupId>
- <artifactId>ojdbc6</artifactId>
- <version>${oracle.version}</version>
- </dependency>
<dependency>
<groupId>net.sourceforge.owlapi</groupId>
<artifactId>owlapi-distribution</artifactId>
@@ -117,17 +73,30 @@
<artifactId>org.semanticweb.hermit</artifactId>
<version>${HermiT.version}</version>
</dependency>
+ <dependency>
+ <groupId>org.semanticweb.elk</groupId>
+ <artifactId>elk-owlapi</artifactId>
+ <version>${elk.version}</version>
+ </dependency>
<dependency>
<groupId>commons-cli</groupId>
<artifactId>commons-cli</artifactId>
<version>${commons-cli.version}</version>
</dependency>
- <dependency>
- <groupId>commons-net</groupId>
- <artifactId>commons-net</artifactId>
- <version>${commons-net.version}</version>
- </dependency>
</dependencies>
</dependencyManagement>
-</project>
+
+ <repositories>
+ <repository>
+ <id>spring-releases</id>
+ <name>Spring Releases</name>
+ <url>https://repo.spring.io/libs-release</url>
+ </repository>
+ <repository>
+ <id>neo4j</id>
+ <name>Neo4j</name>
+ <url>http://m2.neo4j.org/</url>
+ </repository>
+ </repositories>
+</project>
\ No newline at end of file
diff --git a/ols-loader/pom.xml b/ols-loader/pom.xml
deleted file mode 100644
index f6461e0a..00000000
--- a/ols-loader/pom.xml
+++ /dev/null
@@ -1,53 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<project xmlns="http://maven.apache.org/POM/4.0.0"
- xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
- xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
- <parent>
- <artifactId>ols-ebi</artifactId>
- <groupId>uk.ac.ebi.ols</groupId>
- <version>3.0-SNAPSHOT</version>
- </parent>
- <modelVersion>4.0.0</modelVersion>
-
- <artifactId>ols-loader</artifactId>
-
- <dependencies>
- <dependency>
- <groupId>uk.ac.ebi.ols</groupId>
- <artifactId>ols-core</artifactId>
- <version>3.0-SNAPSHOT</version>
- </dependency>
-
- <dependency>
- <groupId>uk.ac.ebi.ols</groupId>
- <artifactId>ols-solr</artifactId>
- <version>3.0-SNAPSHOT</version>
- </dependency>
-
- <dependency>
- <groupId>org.springframework.boot</groupId>
- <artifactId>spring-boot-starter-test</artifactId>
- <version>1.2.0.RELEASE</version>
- <scope>test</scope>
- </dependency>
- </dependencies>
-
- <build>
- <plugins>
- <plugin>
- <groupId>org.springframework.boot</groupId>
- <artifactId>spring-boot-maven-plugin</artifactId>
- <version>1.2.0.RELEASE</version>
- <executions>
- <execution>
- <goals>
- <goal>repackage</goal>
- </goals>
- </execution>
- </executions>
- </plugin>
- </plugins>
- </build>
-
-
-</project>
\ No newline at end of file
diff --git a/ols-loader/src/main/java/uk/ac/ebi/spot/DocumentDecorator.java b/ols-loader/src/main/java/uk/ac/ebi/spot/DocumentDecorator.java
deleted file mode 100644
index 9b07aadd..00000000
--- a/ols-loader/src/main/java/uk/ac/ebi/spot/DocumentDecorator.java
+++ /dev/null
@@ -1,41 +0,0 @@
-package uk.ac.ebi.spot;
-
-import uk.ac.ebi.spot.ols.model.OntologyDocument;
-
-/**
- * @author Simon Jupp
- * @date 17/02/2015
- * Samples, Phenotypes and Ontologies Team, EMBL-EBI
- */
-public class DocumentDecorator {
-
- private boolean hasError;
- private String message;
-
- private final OntologyDocument document;
-
- public boolean isHasError() {
- return hasError;
- }
-
- public void setHasError(boolean hasError) {
- this.hasError = hasError;
- }
-
- public String getMessage() {
- return message;
- }
-
- public void setMessage(String message) {
- this.message = message;
- }
-
-
- public DocumentDecorator(OntologyDocument document) {
- this.document = document;
- this.hasError = false;
- this.message = "";
- }
-
-
-}
diff --git a/ols-loader/src/main/java/uk/ac/ebi/spot/FileUpdatingService.java b/ols-loader/src/main/java/uk/ac/ebi/spot/FileUpdatingService.java
deleted file mode 100644
index a164abc4..00000000
--- a/ols-loader/src/main/java/uk/ac/ebi/spot/FileUpdatingService.java
+++ /dev/null
@@ -1,97 +0,0 @@
-package uk.ac.ebi.spot;
-
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
-import org.springframework.beans.factory.annotation.Autowired;
-import org.springframework.beans.factory.annotation.Value;
-import org.springframework.core.task.TaskExecutor;
-import uk.ac.ebi.spot.config.OntologyResourceConfig;
-import uk.ac.ebi.spot.ols.model.OntologyDocument;
-
-import java.io.File;
-import java.util.*;
-import java.util.concurrent.CountDownLatch;
-
-/**
- * @author Simon Jupp
- * @date 16/02/2015
- * Samples, Phenotypes and Ontologies Team, EMBL-EBI
- */
-public class FileUpdatingService {
-
- private Collection<OntologyDocument> updatedOntologies;
- private Collection<OntologyDocument> failedOntologies;
-
- private CountDownLatch latch;
-
- private TaskExecutor taskExecutor;
-
- private Map<String, File> localFileMap;
-
- private Logger log = LoggerFactory.getLogger(getClass());
-
- public Logger getLog() {
- return log;
- }
-
- public FileUpdatingService(TaskExecutor taskExecutor, CountDownLatch latch) {
- this.taskExecutor = taskExecutor;
- this.localFileMap = new HashMap<>();
- this.updatedOntologies = new HashSet<>();
- this.failedOntologies = new HashSet<>();
- this.latch = latch;
- }
- private class FileUpdatingTask implements Runnable {
-
- private OntologyDocument document;
- private FileUpdater fileUpdateService;
-
- public FileUpdatingTask(OntologyDocument document, FileUpdater fileUpdateService) {
- this.document = document;
- this.fileUpdateService = fileUpdateService;
-
- }
-
- public void run() {
- // check if document is updated
-
- OntologyResourceConfig config = document.getConfig();
-
- FileUpdater.FileStatus status = null;
- try {
- status = fileUpdateService.getFile(config.getNamespace(), config.getFileLocation());
- if (status.isNew()) {
- updatedOntologies.add(document);
- localFileMap.put(document.getOntologyId(), status.getFile());
- }
- } catch (FileUpdateServiceException e) {
- log.error("Error checking: " + config.getTitle(), e);
- failedOntologies.add(document);
- }
- finally {
- latch.countDown();
- }
-
- }
- }
-
- public Map<String, File> getLocalFileMap() {
- return localFileMap;
- }
-
-
-
- public void checkForUpdates(List<OntologyDocument> documents, FileUpdater fileUpdateService) {
- for(OntologyDocument document : documents) {
- getLog().info("Starting file update check for " + document.getOntologyId());
- taskExecutor.execute(new FileUpdatingTask(document, fileUpdateService));
- }
- }
-
- public Collection<OntologyDocument> getUpdatedOntologies() {
- return updatedOntologies;
- }
- public Collection<OntologyDocument> getFailedOntologies() {
- return failedOntologies;
- }
-}
diff --git a/ols-loader/src/main/java/uk/ac/ebi/spot/LoadingApplication.java b/ols-loader/src/main/java/uk/ac/ebi/spot/LoadingApplication.java
deleted file mode 100644
index af4af0e8..00000000
--- a/ols-loader/src/main/java/uk/ac/ebi/spot/LoadingApplication.java
+++ /dev/null
@@ -1,142 +0,0 @@
-package uk.ac.ebi.spot;
-
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
-import org.springframework.beans.factory.annotation.Autowired;
-import org.springframework.boot.CommandLineRunner;
-import org.springframework.boot.SpringApplication;
-import org.springframework.boot.autoconfigure.EnableAutoConfiguration;
-import org.springframework.boot.autoconfigure.SpringBootApplication;
-import org.springframework.boot.context.properties.EnableConfigurationProperties;
-import org.springframework.core.io.FileSystemResource;
-import org.springframework.scheduling.concurrent.ThreadPoolTaskExecutor;
-
-import uk.ac.ebi.spot.config.OntologyResourceConfig;
-import uk.ac.ebi.spot.loader.ELKOWLOntologyLoader;
-import uk.ac.ebi.spot.loader.HermitOWLOntologyLoader;
-import uk.ac.ebi.spot.loader.OntologyLoader;
-import uk.ac.ebi.spot.loader.SKOSLoader;
-import uk.ac.ebi.spot.ols.model.OntologyDocument;
-import uk.ac.ebi.spot.ols.model.Status;
-import uk.ac.ebi.spot.ols.repository.MongoOntologyRepository;
-import uk.ac.ebi.spot.ols.service.OntologyIndexer;
-
-import java.util.Collection;
-import java.util.Date;
-import java.util.HashSet;
-import java.util.List;
-import java.util.concurrent.CountDownLatch;
-
-/**
- * @author Simon Jupp
- * @date 11/02/2015
- * Samples, Phenotypes and Ontologies Team, EMBL-EBI
- *
- * This application reads from an ontology documents repository and checks if any ontologies external
- * ontologies have been updated. If they have it create indexes
- *
- */
-@SpringBootApplication
-public class LoadingApplication implements CommandLineRunner {
-
- private Logger log = LoggerFactory.getLogger(getClass());
-
- public Logger getLog() {
- return log;
- }
-
- @Autowired
- MongoOntologyRepository mongoOntologyRepository;
-
- @Autowired
- List<OntologyIndexer> indexers;
-
- @Autowired
- FileUpdater fileUpdater;
-
- @Override
- public void run(String... args) throws Exception {
-
- System.setProperty("entityExpansionLimit", "10000000");
- Collection<OntologyDocument> failedOntologies = new HashSet<OntologyDocument>();
-
- ThreadPoolTaskExecutor executor = new ThreadPoolTaskExecutor();
- executor.setCorePoolSize(5);
- executor.setMaxPoolSize(10);
- executor.setQueueCapacity(25);
- executor.initialize();
-
- List<OntologyDocument> allDocuments = mongoOntologyRepository.findAll();
- CountDownLatch latch = new CountDownLatch(allDocuments.size());
- FileUpdatingService service = new FileUpdatingService(executor, latch);
-
- service.checkForUpdates(allDocuments, fileUpdater);
-
- failedOntologies.addAll(service.getFailedOntologies());
-
- try {
- // wait for ontologies to have been checked
- latch.await();
-
- // for the ontologies that were updated, create the new index
- for (OntologyDocument document : service.getUpdatedOntologies()) {
-
- document.setStatus(Status.LOADING);
- mongoOntologyRepository.save(document);
-
- OntologyResourceConfig config = document.getConfig();
-
- try {
- OntologyLoader loader = null;
- if (config.isClassify()) {
- loader = new HermitOWLOntologyLoader(config);
- }
- else if (config.isSkos()) {
- loader = new SKOSLoader(config);
- }
- else {
- loader = new ELKOWLOntologyLoader(config);
- }
-
- // if updated get local path, and set location to local file
- loader.setOntologyResource(new FileSystemResource(service.getLocalFileMap().get(document.getOntologyId())));
-
- // get all the available indexers
- for (OntologyIndexer indexer : indexers) {
- // create the new index
- indexer.createIndex(loader);
- }
-
- document.setStatus(Status.LOADED);
- document.setUpdated(new Date());
- mongoOntologyRepository.save(document);
-
- } catch (Exception e) {
- getLog().error("Failed to create any indexes for " + document.getOntologyId());
- failedOntologies.add(document);
- }
- }
-
- for (OntologyDocument failed : failedOntologies) {
- failed.setStatus(Status.FAILED);
- failed.setUpdated(new Date());
- mongoOntologyRepository.save(failed);
- log.error("Failed to update: " + failed);
- }
-
-
- } catch (Exception e) {
- getLog().error("Failed to run file update service");
- }
-
-
-
-
-
- }
-
- public static void main(String[] args) throws Exception {
- SpringApplication.run(LoadingApplication.class, args);
- }
-
-}
diff --git a/ols-loader/src/main/resources/application.properties b/ols-loader/src/main/resources/application.properties
deleted file mode 100644
index 51f6046e..00000000
--- a/ols-loader/src/main/resources/application.properties
+++ /dev/null
@@ -1,4 +0,0 @@
-spring.data.mongodb.database ols
-
-#ols.loader.filedir /Users/jupp/Dropbox/dev/ols/ols-loader/src/main/resources/data
-ols.loader.filedir data
\ No newline at end of file
diff --git a/ols-mongo/pom.xml b/ols-mongo/pom.xml
index fea6d21a..7359253f 100644
--- a/ols-mongo/pom.xml
+++ b/ols-mongo/pom.xml
@@ -3,9 +3,10 @@
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<parent>
- <artifactId>ols-ebi</artifactId>
- <groupId>uk.ac.ebi.ols</groupId>
- <version>3.0-SNAPSHOT</version>
+ <groupId>uk.ac.ebi.spot</groupId>
+ <artifactId>ols-parent</artifactId>
+ <version>3.0.0-SNAPSHOT</version>
+ <relativePath>../ols-parent/pom.xml</relativePath>
</parent>
<modelVersion>4.0.0</modelVersion>
@@ -16,14 +17,20 @@
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-data-mongodb</artifactId>
- <version>1.2.0.RELEASE</version>
</dependency>
<dependency>
- <groupId>uk.ac.ebi.ols</groupId>
+ <groupId>uk.ac.ebi.spot</groupId>
<artifactId>ols-core</artifactId>
- <version>3.0-SNAPSHOT</version>
+ <version>3.0.0-SNAPSHOT</version>
</dependency>
+
+ <dependency>
+ <groupId>org.codehaus.jackson</groupId>
+ <artifactId>jackson-mapper-asl</artifactId>
+ <version>1.5.3</version>
+ </dependency>
+
</dependencies>
@@ -32,7 +39,6 @@
<plugin>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-maven-plugin</artifactId>
- <version>1.2.0.RELEASE</version>
<executions>
<execution>
<goals>
diff --git a/ols-mongo/src/main/java/uk/ac/ebi/spot/ConfigurationLoaderApplication.java b/ols-mongo/src/main/java/uk/ac/ebi/spot/ols/ConfigurationLoaderApplication.java
similarity index 53%
rename from ols-mongo/src/main/java/uk/ac/ebi/spot/ConfigurationLoaderApplication.java
rename to ols-mongo/src/main/java/uk/ac/ebi/spot/ols/ConfigurationLoaderApplication.java
index 2f9b8625..f3cda872 100644
--- a/ols-mongo/src/main/java/uk/ac/ebi/spot/ConfigurationLoaderApplication.java
+++ b/ols-mongo/src/main/java/uk/ac/ebi/spot/ols/ConfigurationLoaderApplication.java
@@ -1,16 +1,14 @@
-package uk.ac.ebi.spot;
+package uk.ac.ebi.spot.ols;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.boot.CommandLineRunner;
import org.springframework.boot.SpringApplication;
import org.springframework.boot.autoconfigure.EnableAutoConfiguration;
import org.springframework.boot.autoconfigure.SpringBootApplication;
-import uk.ac.ebi.spot.config.OntologyResourceConfig;
-import uk.ac.ebi.spot.config.PropertyBasedLoadingService;
-import uk.ac.ebi.spot.loader.OntologyLoader;
-import uk.ac.ebi.spot.ols.model.OntologyDocument;
-import uk.ac.ebi.spot.ols.model.Status;
-import uk.ac.ebi.spot.ols.repository.MongoOntologyRepository;
+import uk.ac.ebi.spot.ols.config.OntologyResourceConfig;
+import uk.ac.ebi.spot.ols.indexer.MongoTreeIndexer;
+import uk.ac.ebi.spot.ols.loader.OntologyLoader;
+import uk.ac.ebi.spot.ols.config.PropertyBasedLoadingService;
/**
* @author Simon Jupp
@@ -21,8 +19,11 @@
@SpringBootApplication
public class ConfigurationLoaderApplication implements CommandLineRunner {
+// @Autowired
+// MongoOntologyRepository mongoOntologyRepository;
+
@Autowired
- MongoOntologyRepository mongoOntologyRepository;
+ MongoTreeIndexer indexer;
@Autowired
PropertyBasedLoadingService propertyBasedLoadingService;
@@ -31,24 +32,27 @@ public class ConfigurationLoaderApplication implements CommandLineRunner {
public void run(String... args) throws Exception {
+ System.setProperty("entityExpansionLimit", "10000000");
System.out.println("Starting mongodb config loading application");
OntologyResourceConfig config = propertyBasedLoadingService.getConfiguration();
System.out.println("Got config for " + config.getTitle());
- OntologyDocument document = new OntologyDocument(config.getNamespace(), config);
+// OntologyDocument document = new OntologyDocument(config.getNamespace(), config);
// System.out.println("Clearing existing mongo db...");
// mongoOntologyRepository.deleteAll();
- System.out.println("Saving document to mongo db...");
- mongoOntologyRepository.save(document);
-
- System.out.println("document loaded");
-
- for (OntologyDocument document1 : mongoOntologyRepository.findAll()) {
- System.out.println("mongo document id: " + document1.getOntologyId());
- System.out.println("mongo ontology config id" + document1.getConfig().getId());
- }
-
+// System.out.println("Saving document to mongo db...");
+// mongoOntologyRepository.save(document);
+//
+// System.out.println("document loaded");
+//
+// for (OntologyDocument document1 : mongoOntologyRepository.findAll()) {
+// System.out.println("mongo document id: " + document1.getOntologyId());
+// System.out.println("mongo ontology config id" + document1.getConfig().getId());
+// }
+
+ OntologyLoader loader = propertyBasedLoadingService.getLoader();
+ indexer.createIndex(loader);
}
diff --git a/ols-mongo/src/main/java/uk/ac/ebi/spot/ols/indexer/MongoTreeIndexer.java b/ols-mongo/src/main/java/uk/ac/ebi/spot/ols/indexer/MongoTreeIndexer.java
new file mode 100644
index 00000000..5a79ba4d
--- /dev/null
+++ b/ols-mongo/src/main/java/uk/ac/ebi/spot/ols/indexer/MongoTreeIndexer.java
@@ -0,0 +1,247 @@
+package uk.ac.ebi.spot.ols.indexer;
+
+import org.codehaus.jackson.map.ObjectMapper;
+import org.semanticweb.owlapi.model.IRI;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+import org.springframework.stereotype.Component;
+import uk.ac.ebi.spot.ols.loader.OntologyLoader;
+import uk.ac.ebi.spot.ols.model.TreeDocument;
+import uk.ac.ebi.spot.ols.model.TreeNode;
+import uk.ac.ebi.spot.ols.exception.IndexingException;
+import uk.ac.ebi.spot.ols.model.OntologyIndexer;
+
+import java.io.IOException;
+import java.time.Duration;
+import java.time.Instant;
+import java.util.*;
+import java.util.stream.Collectors;
+
+/**
+ * @author Simon Jupp
+ * @date 04/03/2015
+ * Samples, Phenotypes and Ontologies Team, EMBL-EBI
+ */
+@Component
+
+public class MongoTreeIndexer implements OntologyIndexer {
+
+ private Logger log = LoggerFactory.getLogger(getClass());
+
+ public Logger getLog() {
+ return log;
+ }
+
+ @Override
+ public void createIndex(Collection<OntologyLoader> loaders) throws IndexingException {
+
+ for (OntologyLoader loader : loaders) {
+ loader.getAllClasses();
+ Instant start = Instant.now();
+
+ Collection<TreeDocument> treeDocuments =
+ loader.getAllClasses().stream().map((iri) -> {
+
+// System.out.println("processing: " + iri + " -> " + loader.getTermLabels().get(iri));
+ Map<IRI, TreeNode> roots = new HashMap<IRI, TreeNode>();
+ if (iri.toString().equals("http://purl.obolibrary.org/obo/GO_0017148")) {
+ System.out.println("i'm here");
+
+ Collection<String> relations = new HashSet<String>();
+ Map<IRI, TreeNode> allNodes = new HashMap<IRI, TreeNode>();
+ TreeNode leafNodes = pathToRoot(loader, iri, roots, relations, allNodes);
+
+ // add sibling to leaf nodes
+// for (TreeNode node : leafNodes) {
+//
+// for (Collection<IRI> parents: getParentNode(loader, IRI.create(node.getUri()) ) {
+//
+// }
+//
+// }
+ }
+// createAncestralTree(loader, iri, roots, allNodes);
+ TreeDocument document = new TreeDocument(loader.getOntologyName() + ":" + iri);
+ document.setAncestralTree(roots.values());
+
+ ObjectMapper mapper = new ObjectMapper();
+ try {
+ getLog().info(mapper.writeValueAsString(document)) ;
+ } catch (IOException e) {
+ e.printStackTrace();
+ }
+
+ return document;
+
+ }).collect(Collectors.toSet());
+
+ Instant end = Instant.now();
+ getLog().info(loader.getOntologyName() + " tree indexed in " + Duration.between(start, end));
+
+
+ }
+
+
+ }
+
+// private void createAncestralTree(OntologyLoader loader, IRI iri, Collection<TreeNode> roots, Map<IRI, TreeNode> allNodes) {
+//
+// pathToRoot(loader, iri, roots, allNodes);
+//
+//
+// // get the direct parents
+// Collection<TreeNode> parentNodes = getParentNode(loader, iri, allNodes);
+//
+// // stop now if we start with a root term
+// if (parentNodes.isEmpty()) {
+// TreeNode node = new TreeNode(iri.toString(), "is-a", loader.getTermLabels().get(iri), loader.getDirectChildTerms().containsKey(iri));
+// allNodes.put(iri, node);
+// roots.add(node);
+// }
+// else {
+// // for each parent node get direct children, these will be the siblings of @iri
+// for (TreeNode node : parentNodes) {
+// Collection<TreeNode> parentChildren = getChildNodes(loader, IRI.create(node.getUri()), allNodes);
+// node.getChildren().addAll(parentChildren);
+// pathToRoot(loader, node, roots, allNodes);
+// }
+// }
+// }
+
+// private void pathToRoot(OntologyLoader loader, TreeNode node, Collection<TreeNode> roots, Map<IRI, TreeNode> allNodes) {
+// Collection<TreeNode> parentNodes = getParentNode(loader, IRI.create(node.getUri()), allNodes);
+// // if no more parents, we've hit a root
+// if (parentNodes.isEmpty()) {
+// roots.add(node);
+// }
+// else {
+// for (TreeNode parents : parentNodes) {
+// parents.getChildren().add(node);
+// pathToRoot(loader, parents, roots, allNodes);
+// }
+// }
+// }
+
+ private TreeNode pathToRoot(OntologyLoader loader, IRI iri, Map<IRI, TreeNode> roots, Collection<String> relations, Map<IRI, TreeNode> allNodes) {
+
+// System.out.println("walking: " + iri + " -> " + loader.getTermLabels().get(iri));
+ if (allNodes.containsKey(iri)) {
+ return allNodes.get(iri);
+ }
+ TreeNode thisNode = new TreeNode(iri.toString(), loader.getTermLabels().get(iri), loader.getDirectChildTerms().containsKey(iri));
+ allNodes.put(iri, thisNode);
+ Collection<IRI> parentIRIs = getParentNode(loader, iri);
+ Map<IRI, Collection<IRI>> relatedParentIRIs = getRelatedParents(loader, iri);
+
+ // if no more parents, we're at a root
+ if (parentIRIs.isEmpty() && relatedParentIRIs.isEmpty()) {
+ if (!roots.containsKey(iri)) {
+ roots.put(iri, thisNode);
+ }
+ }
+ else {
+ for (IRI parent : parentIRIs) {
+ TreeNode node = pathToRoot(loader, parent, roots,relations, allNodes);
+ node.getChildren().add(thisNode);
+ }
+
+ // get related nodes
+ if (!relatedParentIRIs.isEmpty()) {
+ for (IRI relation : relatedParentIRIs.keySet()) {
+ // get relation label
+ String relationLabel = loader.getTermLabels().get(relation);
+ // collect all labels
+ relations.add(relationLabel);
+
+ // get related nodes
+ for (IRI relatedIri : relatedParentIRIs.get(relation)) {
+ TreeNode relatedNode = pathToRoot(loader, relatedIri, roots, relations, allNodes);
+
+ if (!relatedNode.getRelatedNodes().containsKey(relationLabel)) {
+ relatedNode.getRelatedNodes().put(relationLabel, new HashSet<>());
+ }
+ relatedNode.getRelatedNodes().get(relationLabel).add(thisNode);
+ }
+ }
+ }
+ }
+ return thisNode;
+ }
+
+// private Collection<TreeNode> getChildNodes(OntologyLoader loader, IRI iri, Map<IRI, TreeNode> allNodes) {
+// Collection<TreeNode> children = new HashSet<>();
+// if (loader.getDirectChildTerms().containsKey(iri)) {
+// for (IRI childIri : loader.getDirectChildTerms().get(iri)) {
+//
+// if (!allNodes.containsKey(childIri)) {
+// TreeNode node = new TreeNode(childIri.toString(), "is-a", loader.getTermLabels().get(childIri), loader.getDirectChildTerms().containsKey(childIri));
+// allNodes.put(childIri, node);
+// }
+// children.add(allNodes.get(childIri));
+// }
+// }
+// return children;
+// }
+//
+// private Collection<TreeNode> getParentNode (OntologyLoader loader, IRI iri, Map<IRI, TreeNode> allNodes) {
+// Collection<TreeNode> parents = new HashSet<>();
+// if (loader.getDirectParentTerms().containsKey(iri)) {
+// for (IRI parentIri : loader.getDirectParentTerms().get(iri)) {
+//
+// if (!allNodes.containsKey(parentIri)) {
+// TreeNode node = new TreeNode(parentIri.toString(), "is-a", loader.getTermLabels().get(parentIri), loader.getDirectChildTerms().containsKey(parentIri));
+// allNodes.put(parentIri, node);
+// }
+// parents.add(allNodes.get(parentIri));
+// }
+// }
+//
+// Map<IRI, Collection<IRI>> relatedTerms = loader.getRelatedTerms(iri);
+// for (IRI relationIri : relatedTerms.keySet()) {
+// String relationLabel = loader.getTermLabels().get(relationIri);
+// for (IRI relatedIri : relatedTerms.get(relationIri)) {
+// if (!allNodes.containsKey(relatedIri)) {
+// TreeNode node = new TreeNode(relatedIri.toString(), relationLabel, loader.getTermLabels().get(relatedIri), loader.getDirectChildTerms().containsKey(relatedIri));
+// allNodes.put(relatedIri, node);
+// }
+// parents.add(allNodes.get(relatedIri));
+// }
+// }
+// return parents;
+// }
+
+ private Collection<IRI> getParentNode (OntologyLoader loader, IRI iri) {
+ Collection<IRI> parents = new HashSet<>();
+ if (loader.getDirectParentTerms().containsKey(iri)) {
+ for (IRI parentIri : loader.getDirectParentTerms().get(iri)) {
+ parents.add(parentIri);
+ }
+ }
+ return parents;
+ }
+
+ private Map<IRI, Collection<IRI>> getRelatedParents (OntologyLoader loader, IRI iri) {
+ Map<IRI, Collection<IRI>> relatedParents = new HashMap<>();
+
+ Map<IRI, Collection<IRI>> relatedTerms = loader.getRelatedTerms(iri);
+ for (IRI relationIri : relatedTerms.keySet()) {
+ for (IRI relatedIri : relatedTerms.get(relationIri)) {
+ if (!relatedParents.containsKey(relationIri)) {
+ relatedParents.put(relationIri, new HashSet<>());
+ }
+ relatedParents.get(relationIri).add(relatedIri);
+ }
+ }
+ return relatedParents;
+ }
+
+ @Override
+ public void createIndex(OntologyLoader loader) throws IndexingException {
+ createIndex(Collections.singleton(loader));
+ }
+
+ @Override
+ public void dropIndex(OntologyLoader loader) throws IndexingException {
+
+ }
+}
diff --git a/ols-mongo/src/main/java/uk/ac/ebi/spot/ols/indexer/Relations.java b/ols-mongo/src/main/java/uk/ac/ebi/spot/ols/indexer/Relations.java
new file mode 100644
index 00000000..8fcf98c2
--- /dev/null
+++ b/ols-mongo/src/main/java/uk/ac/ebi/spot/ols/indexer/Relations.java
@@ -0,0 +1,10 @@
+package uk.ac.ebi.spot.ols.indexer;
+
+/**
+ * @author Simon Jupp
+ * @date 04/03/2015
+ * Samples, Phenotypes and Ontologies Team, EMBL-EBI
+ */
+public enum Relations {
+ ISA;
+}
diff --git a/ols-mongo/src/main/java/uk/ac/ebi/spot/ols/model/TreeDocument.java b/ols-mongo/src/main/java/uk/ac/ebi/spot/ols/model/TreeDocument.java
new file mode 100644
index 00000000..491223d9
--- /dev/null
+++ b/ols-mongo/src/main/java/uk/ac/ebi/spot/ols/model/TreeDocument.java
@@ -0,0 +1,95 @@
+package uk.ac.ebi.spot.ols.model;
+
+import org.springframework.data.annotation.Id;
+import org.springframework.data.mongodb.core.mapping.Document;
+
+import java.util.Collection;
+import java.util.HashSet;
+
+/**
+ * @author Simon Jupp
+ * @date 04/03/2015
+ * Samples, Phenotypes and Ontologies Team, EMBL-EBI
+ */
+@Document(collection = "olstree")
+public class TreeDocument {
+
+ @Id
+ private String id;
+
+
+ // short form
+ private String uri;
+ private String shortFrom;
+ private String ontologyName;
+
+ // Collection<String> properties;
+ // Collection<String> hierarchical;
+
+ private Collection<TreeNode> pathToRoot;
+ private Collection<TreeNode> ancestralTree;
+ private Collection<TreeNode> decendantTree;
+
+ public TreeDocument(String id) {
+ this.id = id;
+ this.ancestralTree = new HashSet<>();
+ this.decendantTree = new HashSet<>();
+ this.pathToRoot = new HashSet<>();
+ }
+
+ public String getId() {
+ return id;
+ }
+
+ public Collection<TreeNode> getDecendantTree() {
+
+ return decendantTree;
+ }
+
+
+ public String getUri() {
+ return uri;
+ }
+
+ public void setUri(String uri) {
+ this.uri = uri;
+ }
+
+ public String getShortFrom() {
+ return shortFrom;
+ }
+
+ public void setShortFrom(String shortFrom) {
+ this.shortFrom = shortFrom;
+ }
+
+ public String getOntologyName() {
+ return ontologyName;
+ }
+
+ public void setOntologyName(String ontologyName) {
+ this.ontologyName = ontologyName;
+ }
+
+ public void setDecendantTree(Collection<TreeNode> decendantTree) {
+ this.decendantTree = decendantTree;
+ }
+
+ public Collection<TreeNode> getAncestralTree() {
+ return ancestralTree;
+ }
+
+ public void setAncestralTree(Collection<TreeNode> ancestralTree) {
+ this.ancestralTree = ancestralTree;
+ }
+
+ public Collection<TreeNode> getPathToRoot() {
+ return pathToRoot;
+ }
+
+ public void setPathToRoot(Collection<TreeNode> pathToRoot) {
+ this.pathToRoot = pathToRoot;
+ }
+
+
+}
diff --git a/ols-mongo/src/main/java/uk/ac/ebi/spot/ols/model/TreeNode.java b/ols-mongo/src/main/java/uk/ac/ebi/spot/ols/model/TreeNode.java
new file mode 100644
index 00000000..d9eb95e6
--- /dev/null
+++ b/ols-mongo/src/main/java/uk/ac/ebi/spot/ols/model/TreeNode.java
@@ -0,0 +1,77 @@
+package uk.ac.ebi.spot.ols.model;
+
+import java.util.Collection;
+import java.util.HashMap;
+import java.util.HashSet;
+import java.util.Map;
+
+/**
+ * @author Simon Jupp
+ * @date 04/03/2015
+ * Samples, Phenotypes and Ontologies Team, EMBL-EBI
+ */
+public class TreeNode {
+
+ public String uri;
+// public String relation;
+ public String label;
+ public boolean hasChildren;
+ public Collection<TreeNode> children;
+ public Map<String, Collection<TreeNode>> relatedNodes;
+
+ public TreeNode(String uri, String label, boolean hasChildren) {
+ this.uri = uri;
+ this.label = label;
+// this.relation = relation;
+ this.children = new HashSet<TreeNode>();
+ relatedNodes = new HashMap<>();
+ this.hasChildren = hasChildren;
+ }
+
+
+ public Map<String, Collection<TreeNode>> getRelatedNodes() {
+ return relatedNodes;
+ }
+
+
+ public boolean isHasChildren() {
+ return hasChildren;
+ }
+
+ public void setHasChildren(boolean hasChildren) {
+ this.hasChildren = hasChildren;
+ }
+
+ public String getUri() {
+ return uri;
+ }
+
+ public void setUri(String uri) {
+ this.uri = uri;
+ }
+
+ public String getLabel() {
+ return label;
+ }
+
+ public void setLabel(String label) {
+ this.label = label;
+ }
+
+ public Collection<TreeNode> getChildren() {
+ return children;
+ }
+
+// public String getRelation() {
+// return relation;
+// }
+//
+// public void setRelation(String relation) {
+// this.relation = relation;
+// }
+
+ public void setChildren(Collection<TreeNode> children) {
+ this.children = children;
+ }
+}
+
diff --git a/ols-mongo/src/main/resources/application-efo.properties b/ols-mongo/src/main/resources/application-efo.properties
index 734efc24..208b8d1e 100644
--- a/ols-mongo/src/main/resources/application-efo.properties
+++ b/ols-mongo/src/main/resources/application-efo.properties
@@ -2,7 +2,7 @@ spring.data.mongodb.database ols
ontology_uri http://www.ebi.ac.uk/efo
title Experimental Factor Ontology
namespace EFO
-location http://www.ebi.ac.uk/efo/efo.owl
+location file:/Users/jupp/Dropbox/dev/ols/data/EFO
label_property http://www.w3.org/2000/01/rdf-schema#label
definition_property http://www.ebi.ac.uk/efo/definition
synonym_property http://www.ebi.ac.uk/efo/alternative_term
diff --git a/ols-mongo/src/main/resources/application-go.properties b/ols-mongo/src/main/resources/application-go.properties
index 9f7bf792..52b2c962 100644
--- a/ols-mongo/src/main/resources/application-go.properties
+++ b/ols-mongo/src/main/resources/application-go.properties
@@ -2,7 +2,7 @@ spring.data.mongodb.database ols
ontology_uri http://purl.obolibrary.org/obo/go.owl
title Gene Ontology
namespace GO
-location http://purl.obolibrary.org/obo/go.owl
+location file:/Users/jupp/Dropbox/dev/ols/data/GO
label_property http://www.w3.org/2000/01/rdf-schema#label
definition_property http://purl.obolibrary.org/obo/IAO_0000115
synonym_property http://www.geneontology.org/formats/oboInOwl#hasExactSynonym
diff --git a/ols-parent/pom.xml b/ols-parent/pom.xml
index 842cbc48..66b2c5bd 100644
--- a/ols-parent/pom.xml
+++ b/ols-parent/pom.xml
@@ -2,264 +2,34 @@
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
- <modelVersion>4.0.0</modelVersion>
<artifactId>ols-parent</artifactId>
- <version>1.0.0-SNAPSHOT</version>
+ <version>3.0.0-SNAPSHOT</version>
<packaging>pom</packaging>
+ <modelVersion>4.0.0</modelVersion>
+
<parent>
<groupId>uk.ac.ebi.spot</groupId>
<artifactId>ols-dependencies</artifactId>
- <version>1.0.0-SNAPSHOT</version>
+ <version>3.0.0-SNAPSHOT</version>
<relativePath>../ols-dependencies/pom.xml</relativePath>
- <!-- lookup parent from repository -->
</parent>
- <name>Ontology Lookup Service Infrastructure</name>
+
+
+ <name>Ontology Lookup Service</name>
<description>
- Infrastructure for Ontology Lookup Service
+ New OLS
</description>
- <!--todo: not sure what this url should be for now-->
- <url>http://wwwdev.ebi.ac.uk/ols</url>
+ <url>http://www.ebi.ac.uk/ontology-lookup</url>
+
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<java.version>1.8</java.version>
</properties>
- <build>
- <plugins>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-compiler-plugin</artifactId>
- <version>3.2</version>
- <configuration>
- <source>1.8</source>
- <target>1.8</target>
- </configuration>
- </plugin>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-source-plugin</artifactId>
- <version>2.4</version>
- <executions>
- <execution>
- <id>attach-source</id>
- <goals>
- <goal>jar</goal>
- </goals>
- </execution>
- </executions>
- </plugin>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-site-plugin</artifactId>
- <version>3.4</version>
- </plugin>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-javadoc-plugin</artifactId>
- <version>2.10.1</version>
- </plugin>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-deploy-plugin</artifactId>
- <version>2.8.2</version>
- </plugin>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-release-plugin</artifactId>
- <version>2.5.1</version>
- </plugin>
- </plugins>
- <extensions>
- <!-- Enabling the use of SCP -->
- <extension>
- <groupId>org.apache.maven.wagon</groupId>
- <artifactId>wagon-ssh</artifactId>
- <version>2.7</version>
- </extension>
- </extensions>
- </build>
-
- <!-- Reporting/Documentation output -->
- <reporting>
- <plugins>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-project-info-reports-plugin</artifactId>
- <version>2.5.1</version>
- </plugin>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-javadoc-plugin</artifactId>
- <version>2.8.1</version>
- <reportSets>
- <reportSet>
- <id>aggregate</id>
- <reports>
- <report>aggregate</report>
- </reports>
- </reportSet>
- </reportSets>
- </plugin>
- </plugins>
- </reporting>
-
- <!-- Licensing -->
- <licenses>
- <license>
- <name>GNU Lesser General Public License</name>
- <url>http://www.gnu.org/copyleft/lesser.html</url>
- <distribution>repo</distribution>
- </license>
- </licenses>
-
- <!-- Mailing Lists -->
- <mailingLists>
- <mailingList>
- <name>OLS List</name>
- <!--todo: make this email-->
- <subscribe>ols@ebi.ac.uk</subscribe>
- <unsubscribe>ols@ebi.ac.uk</unsubscribe>
- <post>ols@ebi.ac.uk</post>
- </mailingList>
- </mailingLists>
-
- <!-- Bug Tracker -->
- <issueManagement>
- <system>jira</system>
- <url>http://www.ebi.ac.uk/panda/jira/browse/OLS</url>
- </issueManagement>
-
- <!-- Version control (project hosted on GitHub) -->
- <scm>
- <connection>scm:git:git@github.com:tburdett/goci.git</connection>
- <developerConnection>scm:git:git@github.com:tburdett/goci.git</developerConnection>
- <url>git@github.com:tburdett/goci.git</url>
- <tag>HEAD</tag>
- </scm>
-
- <!-- Maven repository and site deployment -->
- <!-- TODO: Set this up to work with GitHub repo -->
- <!--<distributionManagement>-->
- <!--<downloadUrl>http://www.ebi.ac.uk/~tburdett/goci/maven/repo</downloadUrl>-->
- <!--<repository>-->
- <!--<id>goci-repo</id>-->
- <!--<name>GOCI Maven Repository</name>-->
- <!--<url>-->
- <!--scp://orange.ebi.ac.uk/homes/tburdett/public_html/goci/maven/repo-->
- <!--</url>-->
- <!--</repository>-->
- <!--<snapshotRepository>-->
- <!--<id>goci-repo</id>-->
- <!--<name>GOCI Maven Repository</name>-->
- <!--<url>-->
- <!--scp://orange.ebi.ac.uk/homes/tburdett/public_html/goci/maven/repo-->
- <!--</url>-->
- <!--</snapshotRepository>-->
- <!--<site>-->
- <!--<id>goci-repo</id>-->
- <!--<name>GOCI Site</name>-->
- <!--<url>-->
- <!--scp://orange.ebi.ac.uk/homes/tburdett/public_html/goci/-->
- <!--</url>-->
- <!--</site>-->
- <!--</distributionManagement>-->
-
- <!-- Developer Listing -->
- <developers>
- <developer>
- <id>tburdett</id>
- <name>Tony Burdett</name>
- <email>tburdett@ebi.ac.uk</email>
- <organization>EBI</organization>
- <organizationUrl>http://www.ebi.ac.uk</organizationUrl>
- <roles>
- <role>administrator</role>
- <role>developer</role>
- </roles>
- <timezone>0</timezone>
- <properties />
- </developer>
- <developer>
- <id>dwelter</id>
- <name>Dani Welter</name>
- <email>dwelter@ebi.ac.uk</email>
- <organization>EBI</organization>
- <organizationUrl>http://www.ebi.ac.uk</organizationUrl>
- <roles>
- <role>developer</role>
- </roles>
- <timezone>0</timezone>
- <properties />
- </developer>
- <developer>
- <id>emma</id>
- <name>Emma Hastings</name>
- <email>emma@ebi.ac.uk</email>
- <organization>EBI</organization>
- <organizationUrl>http://www.ebi.ac.uk</organizationUrl>
- <roles>
- <role>developer</role>
- </roles>
- <timezone>0</timezone>
- <properties />
- </developer>
- </developers>
-
- <!-- To keep things minimal, we only fetch from the GOCI maven repo -->
- <!-- TODO: Set up GWAS sonatype repository? -->
- <!--<repositories>-->
- <!--<repository>-->
- <!--<id>goci-repo</id>-->
- <!--<url>http://www.ebi.ac.uk/~tburdett/goci/maven/repo</url>-->
- <!--<snapshots>-->
- <!--<enabled>true</enabled>-->
- <!--</snapshots>-->
- <!--</repository>-->
- <!--<repository>-->
- <!--<id>Sonatype repository</id>-->
- <!--<name>Sonatype's Maven repository</name>-->
- <!--<url>https://oss.sonatype.org/content/repositories/releases/</url>-->
- <!--</repository>-->
-
- <!--<repository>-->
- <!--<id>coconut.ebi.ac.uk</id>-->
- <!--<name>EBI Artifactory</name>-->
- <!--<url>http://coconut.ebi.ac.uk:8081/artifactory/local-repo/</url>-->
- <!--<snapshots>-->
- <!--<enabled>true</enabled>-->
- <!--</snapshots>-->
- <!--</repository>-->
- <!--</repositories>-->
-
- <profiles>
- <profile>
- <id>default</id>
- <activation>
- <activeByDefault>true</activeByDefault>
- </activation>
-
- <properties>
- <java.location>java</java.location>
- <java.args />
- </properties>
- </profile>
-
- <profile>
- <id>fgservers</id>
- <activation>
- <activeByDefault>false</activeByDefault>
- </activation>
-
- <properties>
- <java.location>/ebi/research/software/Linux_x86_64/opt/java/jdk1.7/bin/java</java.location>
- <java.args>-Dhttp.proxyHost=wwwcache.ebi.ac.uk -Dhttp.proxyPort=3128 -Dhttp.nonProxyHosts=*.ebi.ac.uk -DproxyHost=wwwcache.ebi.ac.uk -DproxyPort=3128 -DproxySet=true</java.args>
- </properties>
- </profile>
- </profiles>
</project>
\ No newline at end of file
diff --git a/ols-solr/README.md b/ols-solr/README.md
index 63ef98e0..dda911c5 100644
--- a/ols-solr/README.md
+++ b/ols-solr/README.md
@@ -1,62 +1 @@
-# OLS-SOLR
-This module is a spring boot application for creating a SOLR index from a given ontology.
-
-You need a local version of SOLR running, we are currently testing with version 4.10.3.
-
-Start SOLR in the example directory with the config supplied by this module
-
-e.g.
-
-java -Dsolr.solr.home=<PATH TO HERE>/ols/ols-solr/src/main/resources/solr-conf -jar start.jar
-
-Once the SOLR service is running (by default at http://localhost:8983/solr) you can create a new index as follows:
-
-1. Create an ontology configuration file. There are some examples in src/main/resources/*.properties
-2. Navigate to the root of the ols repository eg. <PATH TO HERE>/ols/
-3. Build the application jar: mvn clean package
-4. Assuming a properties file called application-uberon.properties you can run the application to build the index with:
-
-java -Xmx2g -jar -Dspring.profiles.active=uberon ols-solr/target/ols-solr-3.0-SNAPSHOT.jar
-
-The config for application-uberon.properties would include:
-
-```
-# The ontology URI
-ontology_uri http://purl.obolibrary.org/obo/uberon.owl
-
-# The full name of the ontology
-title Uber Anatomy Ontology
-
-# The short name for this ontology
-namespace UBERON
-
-# The location to download this ontology (can also be local file path e.g. file:/tmp/uberon.owl
-location http://purl.obolibrary.org/obo/uberon.owl
-
-# primary term label property
-label_property http://www.w3.org/2000/01/rdf-schema#label
-
-# term definition property (use , for multiple)
-definition_property http://purl.obolibrary.org/obo/IAO_0000115
-
-# term synonym property (use , for multiple)
-synonym_property http://www.geneontology.org/formats/oboInOwl#hasExactSynonym
-
-# experimental, can ignore for now
-hierarchical_property http://purl.obolibrary.org/obo/BFO_0000050
-
-# list any properties where you want to ignore assertions (can be annotation or object properties)
-hidden_property
-
-# Base URIs that are local to this ontology, used to identify terms that are defined in this ontology.
-base_uri http://purl.obolibrary.org/obo/UBERON_,http://purl.obolibrary.org/obo/UBPROP_,http://purl.obolibrary.org/obo/uberon/core#
-
-# ignore this
-isInferred false
-
-# does this ontology need to be classified with a DL reasoner? default is ELK, if true we will classify with Hermit
-classify false
-
-# True if the ontology contains OBO style slim annotations
-oboSlims true
-```
+See ../ols-apps/ols-solr-app for an example of the a command line application you can use to build an SOLR index from an ontology.
diff --git a/ols-solr/pom.xml b/ols-solr/pom.xml
index b08d8504..412f83b6 100644
--- a/ols-solr/pom.xml
+++ b/ols-solr/pom.xml
@@ -3,9 +3,10 @@
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<parent>
- <artifactId>ols-ebi</artifactId>
- <groupId>uk.ac.ebi.ols</groupId>
- <version>3.0-SNAPSHOT</version>
+ <groupId>uk.ac.ebi.spot</groupId>
+ <artifactId>ols-parent</artifactId>
+ <version>3.0.0-SNAPSHOT</version>
+ <relativePath>../ols-parent/pom.xml</relativePath>
</parent>
<modelVersion>4.0.0</modelVersion>
<packaging>jar</packaging>
@@ -15,33 +16,16 @@
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-data-solr</artifactId>
- <version>1.2.0.RELEASE</version>
</dependency>
<dependency>
- <groupId>uk.ac.ebi.ols</groupId>
+ <groupId>uk.ac.ebi.spot</groupId>
<artifactId>ols-core</artifactId>
- <version>3.0-SNAPSHOT</version>
</dependency>
+
</dependencies>
- <build>
- <plugins>
- <plugin>
- <groupId>org.springframework.boot</groupId>
- <artifactId>spring-boot-maven-plugin</artifactId>
- <version>1.2.0.RELEASE</version>
- <executions>
- <execution>
- <goals>
- <goal>repackage</goal>
- </goals>
- </execution>
- </executions>
- </plugin>
- </plugins>
- </build>
</project>
\ No newline at end of file
diff --git a/ols-solr/src/main/java/uk/ac/ebi/spot/indexer/OntologySolrRepository.java b/ols-solr/src/main/java/uk/ac/ebi/spot/indexer/OntologySolrRepository.java
deleted file mode 100644
index 6c8cdf39..00000000
--- a/ols-solr/src/main/java/uk/ac/ebi/spot/indexer/OntologySolrRepository.java
+++ /dev/null
@@ -1,18 +0,0 @@
-package uk.ac.ebi.spot.indexer;
-
-import org.springframework.data.solr.repository.SolrCrudRepository;
-import org.springframework.stereotype.Repository;
-import uk.ac.ebi.spot.model.TermDocument;
-import uk.ac.ebi.spot.ols.service.OntologyRepositoryService;
-
-import java.util.List;
-
-/**
- * @author Simon Jupp
- * @date 30/01/2015
- * Samples, Phenotypes and Ontologies Team, EMBL-EBI
- */
-public interface OntologySolrRepository extends SolrCrudRepository<TermDocument, String> {
-
- public List<TermDocument> findByOntologyName(String ontologyName);
-}
\ No newline at end of file
diff --git a/ols-solr/src/main/java/uk/ac/ebi/spot/ols/indexer/OntologySolrRepository.java b/ols-solr/src/main/java/uk/ac/ebi/spot/ols/indexer/OntologySolrRepository.java
new file mode 100644
index 00000000..cb747a31
--- /dev/null
+++ b/ols-solr/src/main/java/uk/ac/ebi/spot/ols/indexer/OntologySolrRepository.java
@@ -0,0 +1,14 @@
+package uk.ac.ebi.spot.ols.indexer;
+
+import org.springframework.data.solr.repository.SolrCrudRepository;
+import uk.ac.ebi.spot.ols.model.TermDocument;
+
+/**
+ * @author Simon Jupp
+ * @date 30/01/2015
+ * Samples, Phenotypes and Ontologies Team, EMBL-EBI
+ */
+public interface OntologySolrRepository extends SolrCrudRepository<TermDocument, String> {
+
+ public TermDocument findByOntologyName(String ontologyName);
+}
\ No newline at end of file
diff --git a/ols-solr/src/main/java/uk/ac/ebi/spot/indexer/SolrIndexer.java b/ols-solr/src/main/java/uk/ac/ebi/spot/ols/indexer/SolrIndexer.java
similarity index 65%
rename from ols-solr/src/main/java/uk/ac/ebi/spot/indexer/SolrIndexer.java
rename to ols-solr/src/main/java/uk/ac/ebi/spot/ols/indexer/SolrIndexer.java
index bcf695d6..41ad8ee2 100644
--- a/ols-solr/src/main/java/uk/ac/ebi/spot/indexer/SolrIndexer.java
+++ b/ols-solr/src/main/java/uk/ac/ebi/spot/ols/indexer/SolrIndexer.java
@@ -1,4 +1,4 @@
-package uk.ac.ebi.spot.indexer;
+package uk.ac.ebi.spot.ols.indexer;
import org.semanticweb.owlapi.model.IRI;
import org.slf4j.Logger;
@@ -6,12 +6,14 @@
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Component;
import org.springframework.util.DigestUtils;
-import uk.ac.ebi.spot.loader.OntologyLoader;
-import uk.ac.ebi.spot.model.TermDocument;
-import uk.ac.ebi.spot.model.TermDocumentBuilder;
-import uk.ac.ebi.spot.util.TermType;
-import uk.ac.ebi.spot.ols.service.OntologyIndexer;
-
+import uk.ac.ebi.spot.ols.loader.OntologyLoader;
+import uk.ac.ebi.spot.ols.model.TermDocument;
+import uk.ac.ebi.spot.ols.model.TermDocumentBuilder;
+import uk.ac.ebi.spot.ols.util.TermType;
+import uk.ac.ebi.spot.ols.model.OntologyIndexer;
+import uk.ac.ebi.spot.ols.util.SiblingGraphCreator;
+
+import java.io.*;
import java.util.*;
import java.util.stream.Collectors;
@@ -24,6 +26,7 @@
public class SolrIndexer implements OntologyIndexer {
private Logger log = LoggerFactory.getLogger(getClass());
+ private int batchSize = 1000;
public Logger getLog() {
return log;
@@ -43,12 +46,13 @@ public void createIndex(Collection<OntologyLoader> loaders) {
for (OntologyLoader loader : loaders) {
- getLog().info("Creating index for " + loader.getOntologyName());
-
- Collection<TermDocument> documents = new HashSet<TermDocument>();
+ getLog().info("Creating new index for " + loader.getOntologyName());
+ long startTime = System.currentTimeMillis();
+ List<TermDocument> documents = new ArrayList<TermDocument>();
for (IRI classTerm : loader.getAllClasses()) {
+
TermDocumentBuilder builder = extractFeatures(loader, classTerm);
builder.setType(TermType.CLASS.toString().toLowerCase());
documents.add(builder.createTermDocument());
@@ -78,9 +82,33 @@ public void createIndex(Collection<OntologyLoader> loaders) {
getLog().info("Number of individuals to index: " + loader.getAllIndividualIRIs().size());
getLog().info("Preparing to save documents...");
- ontologySolrRepository.save(documents);
- getLog().info("Indexing " +loader.getOntologyName()+ " complete!");
+ long endTime = System.currentTimeMillis();
+ long duration = (endTime - startTime) / 1000; // time in seconds
+ getLog().info("Reading " + loader.getOntologyName() + " completed in " + duration + " seconds");
+
+ dropIndex(loader);
+
+ startTime = System.currentTimeMillis();
+
+ int numDocuments = documents.size();
+ getLog().debug("Extracted {} documents", numDocuments);
+
+ // Index documents in batches
+ int count = 0;
+ while (count < numDocuments) {
+ int end = count + getBatchSize();
+ if (end > numDocuments) {
+ end = numDocuments;
+ }
+
+ ontologySolrRepository.save(documents.subList(count, end));
+ count = end;
+ getLog().info("Indexed {} / {} entries", count, numDocuments);
+ }
+ endTime = System.currentTimeMillis();
+ duration = (endTime - startTime) / 1000; // time in seconds
+ getLog().info("Saving indexing " +loader.getOntologyName()+ " completed in " + duration + " seconds");
}
@@ -94,13 +122,15 @@ public void createIndex(OntologyLoader loader) {
@Override
public void dropIndex(OntologyLoader loader) {
-
- getLog().info("Dropping all indexes for " + loader.getOntologyName());
-
-// List<TermDocument> documents = ontologySolrRepository.findByOntologyName(loader.getOntologyName());
-// ontologySolrRepository.delete(documents);
- ontologySolrRepository.deleteAll();
-
+ TermDocument documents = ontologySolrRepository.findByOntologyName(loader.getOntologyName());
+ if (documents != null) {
+ getLog().info("Deleting solr index for " + loader.getOntologyName());
+ long startTime = System.currentTimeMillis();
+ ontologySolrRepository.delete(documents);
+ long endTime = System.currentTimeMillis();
+ long duration = (endTime - startTime) / 1000; // time in seconds
+ getLog().info(loader.getOntologyName() + " removed from solr in " + duration + " seconds");
+ }
}
private TermDocumentBuilder extractFeatures(OntologyLoader loader, IRI termIRI) {
@@ -119,6 +149,34 @@ private TermDocumentBuilder extractFeatures(OntologyLoader loader, IRI termIRI)
.setSubsets(new ArrayList<>(loader.getSubsets(termIRI)))
.setLabel(loader.getTermLabels().get(termIRI));
+// try {
+//
+//
+// //Set json bbop sibling graph string directly (the json graph is not saved to a file it is in memory
+// // in the ByteArrayOutputStream object).
+// ByteArrayOutputStream outStream=new ByteArrayOutputStream();
+// SiblingGraphCreator siblingGraphCreator = new SiblingGraphCreator();
+// //Get the jsonGenerator object for this termIRI
+// siblingGraphCreator.buildBpopGraph(loader, termIRI, outStream);
+// //Set the builder bbobSiblingGraph document.
+// builder.setBbopSibblingGraph(outStream.toString().intern());
+//
+//// //Set path to file containing json bbop sibling graph.
+//// String termId = termIRI.toString().substring(termIRI.toString().lastIndexOf('/') + 1, termIRI.toString().length());
+//// String filePath = "/Users/catherineleroy/Documents/json-graphs/" + termId + ".json";
+//// File file = new File(filePath);
+//// OutputStream outputStream = new FileOutputStream(file);
+//// SiblingGraphCreator siblingGraphCreator = new SiblingGraphCreator();
+//// siblingGraphCreator.buildBpopGraph(loader, termIRI, outputStream);
+//// builder.setBbopSibblingGraph(filePath);
+//
+// } catch (FileNotFoundException e) {
+// e.printStackTrace();
+// } catch (IOException e) {
+// e.printStackTrace();
+// }
+
+
// index all annotations
if (!loader.getAnnotations(termIRI).isEmpty()) {
Map<String, Collection<String>> relatedTerms = new HashMap<>();
@@ -198,10 +256,14 @@ private TermDocumentBuilder extractFeatures(OntologyLoader loader, IRI termIRI)
}
private String generateAnnotationId(String uri) {
- return DigestUtils.md5DigestAsHex(uri.getBytes());
+ return DigestUtils.md5DigestAsHex(uri.getBytes());
}
private String generateId(String ontologyName, String iri) {
return ontologyName.toLowerCase() + ":" + iri;
}
+
+ public int getBatchSize() {
+ return batchSize;
+ }
}
diff --git a/ols-solr/src/main/java/uk/ac/ebi/spot/model/TermDocument.java b/ols-solr/src/main/java/uk/ac/ebi/spot/ols/model/TermDocument.java
similarity index 85%
rename from ols-solr/src/main/java/uk/ac/ebi/spot/model/TermDocument.java
rename to ols-solr/src/main/java/uk/ac/ebi/spot/ols/model/TermDocument.java
index b13c93e1..97fe87bb 100644
--- a/ols-solr/src/main/java/uk/ac/ebi/spot/model/TermDocument.java
+++ b/ols-solr/src/main/java/uk/ac/ebi/spot/ols/model/TermDocument.java
@@ -1,8 +1,9 @@
-package uk.ac.ebi.spot.model;
+package uk.ac.ebi.spot.ols.model;
import org.apache.solr.client.solrj.beans.Field;
import org.springframework.data.solr.core.mapping.SolrDocument;
+import java.io.IOException;
import java.util.List;
import java.util.Map;
@@ -83,10 +84,36 @@ public class TermDocument {
@Field("*_related")
private Map<String, List<String>> related;
- //Added to enable faceting in future at level of term, parent ontology, annotation, etc.
- @Field("resourcename")
- private static final String resourcename = "term";
-
+ /**
+ * A json string describing the tree to wich the given term belong with all siblings, parents, parents sibling until
+ * the root of the ontology.
+ * <br>
+ * This is an example of a bbpop graph : <br>
+ * <br>
+ * {<br>
+ * "nodes": [<br>
+ * {<br>
+ * "id": "GO:0043474",<br>
+ * "lbl": "pigment metabolic process involved in pigmentation"<br>
+ * },<br>
+ * {<br>
+ * "id": "GO:0043475",<br>
+ * "lbl": "pigment metabolic process involved in pigment accumulation"<br>
+ * }<br>
+ * ],<br>
+ * "edges": [<br>
+ * {<br>
+ * "sub": "GO:0043475",<br>
+ * "obj": "GO:0043474",<br>
+ * "pred": "is_a"<br>
+ * }<br>
+ * ]<br>
+ * }<br>
+ *<br>
+ */
+ @Field("bbop_sibling_graph_json")
+ private String bbopSiblingGraph;
+
public TermDocument() {
}
@@ -114,7 +141,8 @@ public TermDocument(
List<String> ancestors,
List<String> children,
List<String> descendants,
- Map<String, List<String>> related
+ Map<String, List<String>> related,
+ String bbopSiblingGraph
) {
this.id = id;
this.uri = uri;
@@ -139,6 +167,7 @@ public TermDocument(
this.children = children;
this.descendants = descendants;
this.related = related;
+ this.bbopSiblingGraph = bbopSiblingGraph;
}
public String getId() {
@@ -325,7 +354,7 @@ public void setRelated(Map<String, List<String>> related) {
this.related = related;
}
- public String getResourcename() {
- return resourcename;
- }
+ public void setBbopSiblingGraph(String bbopSiblingGraph){ this.bbopSiblingGraph=bbopSiblingGraph; }
+
+ public String getBbopSiblingGraph() throws IOException { return this.bbopSiblingGraph; }
}
diff --git a/ols-solr/src/main/java/uk/ac/ebi/spot/model/TermDocumentBuilder.java b/ols-solr/src/main/java/uk/ac/ebi/spot/ols/model/TermDocumentBuilder.java
similarity index 82%
rename from ols-solr/src/main/java/uk/ac/ebi/spot/model/TermDocumentBuilder.java
rename to ols-solr/src/main/java/uk/ac/ebi/spot/ols/model/TermDocumentBuilder.java
index 032d02b4..f309baf2 100644
--- a/ols-solr/src/main/java/uk/ac/ebi/spot/model/TermDocumentBuilder.java
+++ b/ols-solr/src/main/java/uk/ac/ebi/spot/ols/model/TermDocumentBuilder.java
@@ -1,7 +1,7 @@
-package uk.ac.ebi.spot.model;
+package uk.ac.ebi.spot.ols.model;
+import java.io.*;
import java.util.*;
-import java.util.stream.Collectors;
public class TermDocumentBuilder {
private String id;
@@ -27,7 +27,34 @@ public class TermDocumentBuilder {
private List<String> children = new ArrayList<>();
private List<String> descendants = new ArrayList<>();
private Map<String, List<String>> relatedTerms = new HashMap<>();
+ private String bbopSiblingGraph = new String();
+ public TermDocumentBuilder setBbopSibblingGraph(String bbopSiblingGraph) throws IOException {
+
+ //Set string directly
+ this.bbopSiblingGraph = bbopSiblingGraph;
+
+
+// //Read string from file
+// String termId = this.uri.toString().substring(this.uri.toString().lastIndexOf('/') + 1, this.uri.toString().length());
+//
+// String filePath = "/Users/catherineleroy/Documents/json-graphs/" + termId + ".json";
+// System.out.println("filePath = " + filePath);
+// BufferedReader br = new BufferedReader(new FileReader(filePath));
+// StringBuilder sb = new StringBuilder();
+// String line = br.readLine();
+// while (line != null) {
+// sb.append(line);
+// sb.append("\n");
+// line = br.readLine();
+// }
+// System.out.println("this.bbopSiblingGraph = " + this.bbopSiblingGraph);
+// this.bbopSiblingGraph = sb.toString().intern();
+// br.close();
+
+
+ return this;
+ }
public TermDocumentBuilder setId(String id) {
@@ -175,6 +202,7 @@ public TermDocument createTermDocument() {
ancestors,
children,
descendants,
- relatedTerms);
+ relatedTerms,
+ bbopSiblingGraph);
}
}
\ No newline at end of file
diff --git a/ols-solr/src/main/resources/solr-conf/ontology/conf/_rest_managed.json b/ols-solr/src/main/solr-conf/ontology/conf/_rest_managed.json
similarity index 100%
rename from ols-solr/src/main/resources/solr-conf/ontology/conf/_rest_managed.json
rename to ols-solr/src/main/solr-conf/ontology/conf/_rest_managed.json
diff --git a/ols-solr/src/main/resources/solr-conf/ontology/conf/_schema_analysis_stopwords_english.json b/ols-solr/src/main/solr-conf/ontology/conf/_schema_analysis_stopwords_english.json
similarity index 100%
rename from ols-solr/src/main/resources/solr-conf/ontology/conf/_schema_analysis_stopwords_english.json
rename to ols-solr/src/main/solr-conf/ontology/conf/_schema_analysis_stopwords_english.json
diff --git a/ols-solr/src/main/resources/solr-conf/ontology/conf/currency.xml b/ols-solr/src/main/solr-conf/ontology/conf/currency.xml
similarity index 100%
rename from ols-solr/src/main/resources/solr-conf/ontology/conf/currency.xml
rename to ols-solr/src/main/solr-conf/ontology/conf/currency.xml
diff --git a/ols-solr/src/main/resources/solr-conf/ontology/conf/elevate.xml b/ols-solr/src/main/solr-conf/ontology/conf/elevate.xml
similarity index 100%
rename from ols-solr/src/main/resources/solr-conf/ontology/conf/elevate.xml
rename to ols-solr/src/main/solr-conf/ontology/conf/elevate.xml
diff --git a/ols-solr/src/main/resources/solr-conf/ontology/conf/lang/stopwords_en.txt b/ols-solr/src/main/solr-conf/ontology/conf/lang/stopwords_en.txt
similarity index 100%
rename from ols-solr/src/main/resources/solr-conf/ontology/conf/lang/stopwords_en.txt
rename to ols-solr/src/main/solr-conf/ontology/conf/lang/stopwords_en.txt
diff --git a/ols-solr/src/main/resources/solr-conf/ontology/conf/mapping-FoldToASCII.txt b/ols-solr/src/main/solr-conf/ontology/conf/mapping-FoldToASCII.txt
similarity index 100%
rename from ols-solr/src/main/resources/solr-conf/ontology/conf/mapping-FoldToASCII.txt
rename to ols-solr/src/main/solr-conf/ontology/conf/mapping-FoldToASCII.txt
diff --git a/ols-solr/src/main/resources/solr-conf/ontology/conf/mapping-ISOLatin1Accent.txt b/ols-solr/src/main/solr-conf/ontology/conf/mapping-ISOLatin1Accent.txt
similarity index 100%
rename from ols-solr/src/main/resources/solr-conf/ontology/conf/mapping-ISOLatin1Accent.txt
rename to ols-solr/src/main/solr-conf/ontology/conf/mapping-ISOLatin1Accent.txt
diff --git a/ols-solr/src/main/resources/solr-conf/ontology/conf/protwords.txt b/ols-solr/src/main/solr-conf/ontology/conf/protwords.txt
similarity index 100%
rename from ols-solr/src/main/resources/solr-conf/ontology/conf/protwords.txt
rename to ols-solr/src/main/solr-conf/ontology/conf/protwords.txt
diff --git a/ols-solr/src/main/resources/solr-conf/ontology/conf/schema.xml b/ols-solr/src/main/solr-conf/ontology/conf/schema.xml
similarity index 74%
rename from ols-solr/src/main/resources/solr-conf/ontology/conf/schema.xml
rename to ols-solr/src/main/solr-conf/ontology/conf/schema.xml
index 19b3fcff..354d7d2f 100644
--- a/ols-solr/src/main/resources/solr-conf/ontology/conf/schema.xml
+++ b/ols-solr/src/main/solr-conf/ontology/conf/schema.xml
@@ -45,76 +45,66 @@
<!-- If you remove this field, you must _also_ disable the update log in solrconfig.xml or Solr won't start. _version_ and update log are required
for SolrCloud -->
- <field name="_version_" type="long" indexed="true" stored="true"/>
+ <field name="_version_" type="long" indexed="true" stored="true" />
<!-- points to the root document of a block of nested documents. Required for nested document support, may be removed otherwise -->
- <field name="_root_" type="string" indexed="true" stored="false"/>
+ <field name="_root_" type="string" indexed="true" stored="false" />
<!-- Only remove the "id" field if you have a very good reason to. While not strictly required, it is highly recommended. A <uniqueKey> is present
in almost all Solr installations. See the <uniqueKey> declaration below where <uniqueKey> is set to "id". -->
- <field name="id" type="string" indexed="true" stored="true" required="true" multiValued="false"/>
-
- <field name="uri" type="string" indexed="true" stored="true" required="true" multiValued="false"/>
- <field name="uri_key" type="int" indexed="true" stored="false" multiValued="false"/>
- <field name="short_form" type="string" indexed="true" stored="true" required="true" multiValued="true"/>
- <field name="label" type="text_general" indexed="true" stored="true" multiValued="false"/>
- <field name="synonym" type="text_general" indexed="true" stored="true" multiValued="true"/>
- <field name="description" type="text_general" indexed="true" stored="true" multiValued="true"/>
-
- <field name="ontology_name" type="string" indexed="true" stored="true" required="true" multiValued="false"/>
- <field name="ontology_uri" type="string" indexed="true" stored="true" required="true" multiValued="false"/>
- <field name="type" type="string" indexed="true" stored="true" multiValued="false"/>
- <field name="is_defining_ontology" type="boolean" indexed="true" stored="true" multiValued="false"/>
- <field name="subset" type="string" indexed="true" stored="true" multiValued="true"/>
-
- <field name="is_obsolete" type="boolean" indexed="true" stored="false" multiValued="false"/>
- <field name="has_children" type="boolean" indexed="true" stored="true" multiValued="false"/>
- <field name="is_root" type="boolean" indexed="true" stored="true" multiValued="false"/>
- <field name="equivalent_uri" type="string" indexed="true" stored="false" required="false" multiValued="true"/>
- <field name="logical_description" type="text_general" indexed="true" stored="true" multiValued="true"/>
-
- <field name="parent_uri" type="string" indexed="true" stored="false" multiValued="true"/>
- <field name="ancestor_uri" type="string" indexed="true" stored="false" multiValued="true"/>
- <field name="child_uri" type="string" indexed="true" stored="false" multiValued="true"/>
- <field name="descendant_uri" type="string" indexed="true" stored="false" multiValued="true"/>
-
- <!--Common metadata fields, named specifically to match up with-->
- <!--SolrCell metadata when parsing rich documents such as Word, PDF.-->
- <!--Some fields are multiValued only because Tika currently may return-->
- <!--multiple values for them. Some metadata is parsed from the documents,-->
- <!--but there are some which come from the client context:-->
- <!--"content_type": From the HTTP headers of incoming stream-->
- <!--"resourcename": From SolrCell request param resource.name-->
- <!--for default faceting-->
- <field name="resourcename" type="text_general" indexed="true" stored="true"/>
-
+ <field name="id" type="string" indexed="true" stored="true" required="true" multiValued="false" />
+
+ <field name="uri" type="string" indexed="true" stored="true" required="true" multiValued="false" />
+ <field name="uri_key" type="int" indexed="true" stored="false" multiValued="false" />
+ <field name="short_form" type="string" indexed="true" stored="true" required="true" multiValued="true" />
+ <field name="label" type="text_general" indexed="true" stored="true" multiValued="false" />
+ <field name="synonym" type="text_general" indexed="true" stored="true" multiValued="true" />
+ <field name="description" type="text_general" indexed="true" stored="true" multiValued="true" />
+
+ <field name="bbop_sibling_graph_json" type="string" stored="true" indexed="false" required="true" multiValued="false"/>
+
+ <field name="ontology_name" type="string" indexed="true" stored="true" required="true" multiValued="false" />
+ <field name="ontology_uri" type="string" indexed="true" stored="true" required="true" multiValued="false" />
+ <field name="type" type="string" indexed="true" stored="true" multiValued="false" />
+ <field name="is_defining_ontology" type="boolean" indexed="true" stored="true" multiValued="false" />
+ <field name="subset" type="string" indexed="true" stored="true" multiValued="true" />
+
+ <field name="is_obsolete" type="boolean" indexed="true" stored="false" multiValued="false" />
+ <field name="has_children" type="boolean" indexed="true" stored="true" multiValued="false" />
+ <field name="is_root" type="boolean" indexed="true" stored="true" multiValued="false" />
+ <field name="equivalent_uri" type="string" indexed="true" stored="false" required="false" multiValued="true" />
+ <field name="logical_description" type="text_general" indexed="true" stored="true" multiValued="true" />
+
+ <field name="parent_uri" type="string" indexed="true" stored="false" multiValued="true" />
+ <field name="ancestor_uri" type="string" indexed="true" stored="false" multiValued="true" />
+ <field name="child_uri" type="string" indexed="true" stored="false" multiValued="true" />
+ <field name="descendant_uri" type="string" indexed="true" stored="false" multiValued="true" />
<!-- Dynamic field(s) holding relation types -->
- <dynamicField name="*_annotation" type="text_general" indexed="true" stored="true" multiValued="true"/>
- <dynamicField name="*_related" type="string" indexed="true" stored="false" multiValued="true"/>
+ <dynamicField name="*_annotation" type="text_general" indexed="true" stored="true" multiValued="true" />
+ <dynamicField name="*_related" type="string" indexed="true" stored="false" multiValued="true" />
+
<!-- catchall field, containing all other searchable text fields (implemented via copyField further on in this schema -->
- <field name="text" type="text_general" indexed="true" stored="false" multiValued="true"/>
+ <field name="text" type="text_general" indexed="true" stored="false" multiValued="true" />
<!-- catchall text field that indexes tokens both normally and in reverse for efficient leading wildcard queries. -->
- <field name="text_rev" type="text_general_rev" indexed="true" stored="false" multiValued="true"/>
+ <field name="text_rev" type="text_general_rev" indexed="true" stored="false" multiValued="true" />
<!-- catchall field, containing all other searchable text fields (implemented via copyField further on in this schema -->
- <field name="extrasearch" type="text_general" indexed="true" stored="false" multiValued="true"/>
- <copyField source="description" dest="extrasearch" maxChars="10000"/>
- <copyField source="logical_description" dest="extrasearch" maxChars="3000"/>
- <copyField source="*_annotation" dest="extrasearch" maxChars="3000"/>
- <copyField source="resourcename" dest="extrasearch"/>
-
+ <field name="extrasearch" type="text_general" indexed="true" stored="false" multiValued="true" />
+ <copyField source="description" dest="extrasearch" maxChars="10000" />
+ <copyField source="logical_description" dest="extrasearch" maxChars="3000" />
+ <copyField source="*_annotation" dest="extrasearch" maxChars="3000" />
<!-- Used for boosting exact matches -->
- <dynamicField name="*_suggest" type="string" indexed="true" stored="true" multiValued="true"/>
+ <dynamicField name="*_suggest" type="string" indexed="true" stored="true" multiValued="true" />
<copyField source="label" dest="label_suggest"/>
<copyField source="synonym" dest="label_suggest"/>
<!-- phonetic field for partial string matches -->
- <field name="phonetic" type="text_phonetic_do" indexed="true" stored="false" omitNorms="true" multiValued="true"/>
+ <field name="phonetic" type="text_phonetic_do" indexed="true" stored="false" omitNorms="true" multiValued="true" />
<copyField source="label_suggest" dest="phonetic"/>
<copyField source="synonym_suggest" dest="phonetic"/>
@@ -131,47 +121,45 @@
This means that the field "A brown fox" will be matched by query "bro".
We use this to get partial matches, but these whould be boosted lower than exact and left-anchored
-->
- <fieldType name="autocomplete_ngram" class="solr.TextField">
- <analyzer type="index">
- <charFilter class="solr.MappingCharFilterFactory" mapping="mapping-ISOLatin1Accent.txt"/>
- <tokenizer class="solr.StandardTokenizerFactory"/>
- <filter class="solr.WordDelimiterFilterFactory" generateWordParts="1" generateNumberParts="1"
- catenateWords="0" catenateNumbers="0" catenateAll="0" splitOnCaseChange="1"/>
- <filter class="solr.LowerCaseFilterFactory"/>
- <filter class="solr.EdgeNGramFilterFactory" maxGramSize="20" minGramSize="1"/>
- <filter class="solr.PatternReplaceFilterFactory" pattern="([^\w\d\*æøåÆØÅ ])" replacement="" replace="all"/>
- </analyzer>
- <analyzer type="query">
- <charFilter class="solr.MappingCharFilterFactory" mapping="mapping-ISOLatin1Accent.txt"/>
- <tokenizer class="solr.StandardTokenizerFactory"/>
- <filter class="solr.WordDelimiterFilterFactory" generateWordParts="0" generateNumberParts="0"
- catenateWords="0" catenateNumbers="0" catenateAll="0" splitOnCaseChange="0"/>
- <filter class="solr.LowerCaseFilterFactory"/>
- <filter class="solr.PatternReplaceFilterFactory" pattern="([^\w\d\*æøåÆØÅ ])" replacement="" replace="all"/>
- <filter class="solr.PatternReplaceFilterFactory" pattern="^(.{20})(.*)?" replacement="$1" replace="all"/>
- </analyzer>
- </fieldType>
+ <fieldType name="autocomplete_ngram" class="solr.TextField">
+ <analyzer type="index">
+ <charFilter class="solr.MappingCharFilterFactory" mapping="mapping-ISOLatin1Accent.txt"/>
+ <tokenizer class="solr.StandardTokenizerFactory"/>
+ <filter class="solr.WordDelimiterFilterFactory" generateWordParts="1" generateNumberParts="1" catenateWords="0" catenateNumbers="0" catenateAll="0" splitOnCaseChange="1"/>
+ <filter class="solr.LowerCaseFilterFactory"/>
+ <filter class="solr.EdgeNGramFilterFactory" maxGramSize="20" minGramSize="1"/>
+ <filter class="solr.PatternReplaceFilterFactory" pattern="([^\w\d\*æøåÆØÅ ])" replacement="" replace="all"/>
+ </analyzer>
+ <analyzer type="query">
+ <charFilter class="solr.MappingCharFilterFactory" mapping="mapping-ISOLatin1Accent.txt"/>
+ <tokenizer class="solr.StandardTokenizerFactory"/>
+ <filter class="solr.WordDelimiterFilterFactory" generateWordParts="0" generateNumberParts="0" catenateWords="0" catenateNumbers="0" catenateAll="0" splitOnCaseChange="0"/>
+ <filter class="solr.LowerCaseFilterFactory"/>
+ <filter class="solr.PatternReplaceFilterFactory" pattern="([^\w\d\*æøåÆØÅ ])" replacement="" replace="all"/>
+ <filter class="solr.PatternReplaceFilterFactory" pattern="^(.{20})(.*)?" replacement="$1" replace="all"/>
+ </analyzer>
+ </fieldType>
<!-- autocomplete_edge : Will match from the left of the field, e.g. if the document field
is "A brown fox" and the query is "A bro", it will match, but not "brown"
-->
- <fieldType name="autocomplete_edge" class="solr.TextField">
- <analyzer type="index">
- <charFilter class="solr.MappingCharFilterFactory" mapping="mapping-ISOLatin1Accent.txt"/>
- <tokenizer class="solr.KeywordTokenizerFactory"/>
- <filter class="solr.LowerCaseFilterFactory"/>
- <filter class="solr.PatternReplaceFilterFactory" pattern="([\.,;:-_])" replacement=" " replace="all"/>
- <filter class="solr.EdgeNGramFilterFactory" maxGramSize="30" minGramSize="1"/>
- <filter class="solr.PatternReplaceFilterFactory" pattern="([^\w\d\*æøåÆØÅ ])" replacement="" replace="all"/>
- </analyzer>
- <analyzer type="query">
- <charFilter class="solr.MappingCharFilterFactory" mapping="mapping-ISOLatin1Accent.txt"/>
- <tokenizer class="solr.KeywordTokenizerFactory"/>
- <filter class="solr.LowerCaseFilterFactory"/>
- <filter class="solr.PatternReplaceFilterFactory" pattern="([\.,;:-_])" replacement=" " replace="all"/>
- <filter class="solr.PatternReplaceFilterFactory" pattern="([^\w\d\*æøåÆØÅ ])" replacement="" replace="all"/>
- <filter class="solr.PatternReplaceFilterFactory" pattern="^(.{30})(.*)?" replacement="$1" replace="all"/>
- </analyzer>
- </fieldType>
+ <fieldType name="autocomplete_edge" class="solr.TextField">
+ <analyzer type="index">
+ <charFilter class="solr.MappingCharFilterFactory" mapping="mapping-ISOLatin1Accent.txt"/>
+ <tokenizer class="solr.KeywordTokenizerFactory"/>
+ <filter class="solr.LowerCaseFilterFactory"/>
+ <filter class="solr.PatternReplaceFilterFactory" pattern="([\.,;:-_])" replacement=" " replace="all"/>
+ <filter class="solr.EdgeNGramFilterFactory" maxGramSize="30" minGramSize="1"/>
+ <filter class="solr.PatternReplaceFilterFactory" pattern="([^\w\d\*æøåÆØÅ ])" replacement="" replace="all"/>
+ </analyzer>
+ <analyzer type="query">
+ <charFilter class="solr.MappingCharFilterFactory" mapping="mapping-ISOLatin1Accent.txt"/>
+ <tokenizer class="solr.KeywordTokenizerFactory"/>
+ <filter class="solr.LowerCaseFilterFactory"/>
+ <filter class="solr.PatternReplaceFilterFactory" pattern="([\.,;:-_])" replacement=" " replace="all"/>
+ <filter class="solr.PatternReplaceFilterFactory" pattern="([^\w\d\*æøåÆØÅ ])" replacement="" replace="all"/>
+ <filter class="solr.PatternReplaceFilterFactory" pattern="^(.{30})(.*)?" replacement="$1" replace="all"/>
+ </analyzer>
+ </fieldType>
<!-- text_phonetic_do : Matches a phonetic version of the suggest text, for a fuzzy effect
Note that there are other phonetic algorithms as well, but this works pretty well
@@ -193,10 +181,10 @@
<!-- The StrField type is not analyzed, but indexed/stored verbatim. It supports doc values but in that case the field needs to be single-valued
and either required or have a default value. -->
- <fieldType name="string" class="solr.StrField" sortMissingLast="true"/>
+ <fieldType name="string" class="solr.StrField" sortMissingLast="true" />
<!-- boolean type: "true" or "false" -->
- <fieldType name="boolean" class="solr.BoolField" sortMissingLast="true"/>
+ <fieldType name="boolean" class="solr.BoolField" sortMissingLast="true" />
<!-- sortMissingLast and sortMissingFirst attributes are optional attributes are currently supported on types that are sorted internally as
strings and on numeric types. This includes "string","boolean", and, as of 3.5 (and 4.x), int, float, long, date, double, including the "Trie"
@@ -208,19 +196,19 @@
<!-- Default numeric field types. For faster range queries, consider the tint/tfloat/tlong/tdouble types. These fields support doc values, but
they require the field to be single-valued and either be required or have a default value. -->
- <fieldType name="int" class="solr.TrieIntField" precisionStep="0" positionIncrementGap="0"/>
- <fieldType name="float" class="solr.TrieFloatField" precisionStep="0" positionIncrementGap="0"/>
- <fieldType name="long" class="solr.TrieLongField" precisionStep="0" positionIncrementGap="0"/>
- <fieldType name="double" class="solr.TrieDoubleField" precisionStep="0" positionIncrementGap="0"/>
+ <fieldType name="int" class="solr.TrieIntField" precisionStep="0" positionIncrementGap="0" />
+ <fieldType name="float" class="solr.TrieFloatField" precisionStep="0" positionIncrementGap="0" />
+ <fieldType name="long" class="solr.TrieLongField" precisionStep="0" positionIncrementGap="0" />
+ <fieldType name="double" class="solr.TrieDoubleField" precisionStep="0" positionIncrementGap="0" />
<!-- Numeric field types that index each value at various levels of precision to accelerate range queries when the number of values between
the range endpoints is large. See the javadoc for NumericRangeQuery for internal implementation details. Smaller precisionStep values (specified
in bits) will lead to more tokens indexed per value, slightly larger index size, and faster range queries. A precisionStep of 0 disables indexing
at different precision levels. -->
- <fieldType name="tint" class="solr.TrieIntField" precisionStep="8" positionIncrementGap="0"/>
- <fieldType name="tfloat" class="solr.TrieFloatField" precisionStep="8" positionIncrementGap="0"/>
- <fieldType name="tlong" class="solr.TrieLongField" precisionStep="8" positionIncrementGap="0"/>
- <fieldType name="tdouble" class="solr.TrieDoubleField" precisionStep="8" positionIncrementGap="0"/>
+ <fieldType name="tint" class="solr.TrieIntField" precisionStep="8" positionIncrementGap="0" />
+ <fieldType name="tfloat" class="solr.TrieFloatField" precisionStep="8" positionIncrementGap="0" />
+ <fieldType name="tlong" class="solr.TrieLongField" precisionStep="8" positionIncrementGap="0" />
+ <fieldType name="tdouble" class="solr.TrieDoubleField" precisionStep="8" positionIncrementGap="0" />
<!-- The format for this date field is of the form 1995-12-31T23:59:59Z, and is a more restricted form of the canonical representation of dateTime
http://www.w3.org/TR/xmlschema-2/#dateTime The trailing "Z" designates UTC time and is mandatory. Optional fractional seconds are allowed: 1995-12-31T23:59:59.999Z
@@ -228,30 +216,30 @@
the value, ie... NOW/HOUR ... Round to the start of the current hour NOW-1DAY ... Exactly 1 day prior to now NOW/DAY+6MONTHS+3DAYS ... 6 months
and 3 days in the future from the start of the current day Consult the DateField javadocs for more information. Note: For faster range queries,
consider the tdate type -->
- <fieldType name="date" class="solr.TrieDateField" precisionStep="0" positionIncrementGap="0"/>
+ <fieldType name="date" class="solr.TrieDateField" precisionStep="0" positionIncrementGap="0" />
<!-- A Trie based date field for faster date range queries and date faceting. -->
- <fieldType name="tdate" class="solr.TrieDateField" precisionStep="6" positionIncrementGap="0"/>
+ <fieldType name="tdate" class="solr.TrieDateField" precisionStep="6" positionIncrementGap="0" />
<!--Binary data type. The data should be sent/retrieved in as Base64 encoded Strings -->
- <fieldtype name="binary" class="solr.BinaryField"/>
+ <fieldtype name="binary" class="solr.BinaryField" />
<!-- Note: These should only be used for compatibility with existing indexes (created with lucene or older Solr versions). Use Trie based fields
instead. As of Solr 3.5 and 4.x, Trie based fields support sortMissingFirst/Last Plain numeric field types that store and index the text value
verbatim (and hence don't correctly support range queries, since the lexicographic ordering isn't equal to the numeric ordering) NOTE: These
field types are deprecated will be removed in Solr 5.0! -->
- <fieldType name="pint" class="solr.IntField"/>
- <fieldType name="plong" class="solr.LongField"/>
- <fieldType name="pfloat" class="solr.FloatField"/>
- <fieldType name="pdouble" class="solr.DoubleField"/>
- <fieldType name="pdate" class="solr.DateField" sortMissingLast="true"/>
+ <fieldType name="pint" class="solr.IntField" />
+ <fieldType name="plong" class="solr.LongField" />
+ <fieldType name="pfloat" class="solr.FloatField" />
+ <fieldType name="pdouble" class="solr.DoubleField" />
+ <fieldType name="pdate" class="solr.DateField" sortMissingLast="true" />
<!-- The "RandomSortField" is not used to store or search any data. You can declare fields of this type it in your schema to generate pseudo-random
orderings of your docs for sorting or function purposes. The ordering is generated based on the field name and the version of the index. As long
as the index version remains unchanged, and the same field name is reused, the ordering of the docs will be consistent. If you want different
psuedo-random orderings of documents, for the same version of the index, use a dynamicField and change the field name in the request. -->
- <fieldType name="random" class="solr.RandomSortField" indexed="true"/>
+ <fieldType name="random" class="solr.RandomSortField" indexed="true" />
<!-- solr.TextField allows the specification of custom text analyzers specified as a tokenizer and a list of token filters. Different analyzers
may be specified for indexing and querying. The optional positionIncrementGap puts space between multiple fields of this type on the same document,
@@ -263,16 +251,16 @@
<!-- A text field that only splits on whitespace for exact matching of words -->
<fieldType name="text_ws" class="solr.TextField" positionIncrementGap="100">
<analyzer>
- <tokenizer class="solr.WhitespaceTokenizerFactory"/>
+ <tokenizer class="solr.WhitespaceTokenizerFactory" />
</analyzer>
</fieldType>
<!-- A text type for English text where stopwords and synonyms are managed using the REST API -->
<fieldType name="managed_en" class="solr.TextField" positionIncrementGap="100">
<analyzer>
- <tokenizer class="solr.StandardTokenizerFactory"/>
- <filter class="solr.ManagedStopFilterFactory" managed="english"/>
- <filter class="solr.ManagedSynonymFilterFactory" managed="english"/>
+ <tokenizer class="solr.StandardTokenizerFactory" />
+ <filter class="solr.ManagedStopFilterFactory" managed="english" />
+ <filter class="solr.ManagedSynonymFilterFactory" managed="english" />
</analyzer>
</fieldType>
@@ -280,17 +268,17 @@
case-insensitive "stopwords.txt" (empty by default), and down cases. At query time only, it also applies synonyms. -->
<fieldType name="text_general" class="solr.TextField" positionIncrementGap="100">
<analyzer type="index">
- <tokenizer class="solr.StandardTokenizerFactory"/>
- <filter class="solr.StopFilterFactory" ignoreCase="true" words="stopwords.txt"/>
+ <tokenizer class="solr.StandardTokenizerFactory" />
+ <filter class="solr.StopFilterFactory" ignoreCase="true" words="stopwords.txt" />
<!-- in this example, we will only use synonyms at query time <filter class="solr.SynonymFilterFactory" synonyms="index_synonyms.txt" ignoreCase="true"
expand="false"/> -->
- <filter class="solr.LowerCaseFilterFactory"/>
+ <filter class="solr.LowerCaseFilterFactory" />
</analyzer>
<analyzer type="query">
- <tokenizer class="solr.StandardTokenizerFactory"/>
- <filter class="solr.StopFilterFactory" ignoreCase="true" words="stopwords.txt"/>
- <filter class="solr.SynonymFilterFactory" synonyms="synonyms.txt" ignoreCase="true" expand="true"/>
- <filter class="solr.LowerCaseFilterFactory"/>
+ <tokenizer class="solr.StandardTokenizerFactory" />
+ <filter class="solr.StopFilterFactory" ignoreCase="true" words="stopwords.txt" />
+ <filter class="solr.SynonymFilterFactory" synonyms="synonyms.txt" ignoreCase="true" expand="true" />
+ <filter class="solr.LowerCaseFilterFactory" />
</analyzer>
</fieldType>
@@ -298,94 +286,88 @@
down cases, protects words from protwords.txt, and finally applies Porter's stemming. The query time analyzer also applies synonyms from synonyms.txt. -->
<fieldType name="text_en" class="solr.TextField" positionIncrementGap="100">
<analyzer type="index">
- <tokenizer class="solr.StandardTokenizerFactory"/>
+ <tokenizer class="solr.StandardTokenizerFactory" />
<!-- in this example, we will only use synonyms at query time <filter class="solr.SynonymFilterFactory" synonyms="index_synonyms.txt" ignoreCase="true"
expand="false"/> -->
<!-- Case insensitive stop word removal. -->
- <filter class="solr.StopFilterFactory" ignoreCase="true" words="lang/stopwords_en.txt"/>
- <filter class="solr.LowerCaseFilterFactory"/>
- <filter class="solr.EnglishPossessiveFilterFactory"/>
- <filter class="solr.KeywordMarkerFilterFactory" protected="protwords.txt"/>
+ <filter class="solr.StopFilterFactory" ignoreCase="true" words="lang/stopwords_en.txt" />
+ <filter class="solr.LowerCaseFilterFactory" />
+ <filter class="solr.EnglishPossessiveFilterFactory" />
+ <filter class="solr.KeywordMarkerFilterFactory" protected="protwords.txt" />
<!-- Optionally you may want to use this less aggressive stemmer instead of PorterStemFilterFactory: <filter class="solr.EnglishMinimalStemFilterFactory"/> -->
- <filter class="solr.PorterStemFilterFactory"/>
+ <filter class="solr.PorterStemFilterFactory" />
</analyzer>
<analyzer type="query">
- <tokenizer class="solr.StandardTokenizerFactory"/>
- <filter class="solr.SynonymFilterFactory" synonyms="synonyms.txt" ignoreCase="true" expand="true"/>
- <filter class="solr.StopFilterFactory" ignoreCase="true" words="lang/stopwords_en.txt"/>
- <filter class="solr.LowerCaseFilterFactory"/>
- <filter class="solr.EnglishPossessiveFilterFactory"/>
- <filter class="solr.KeywordMarkerFilterFactory" protected="protwords.txt"/>
+ <tokenizer class="solr.StandardTokenizerFactory" />
+ <filter class="solr.SynonymFilterFactory" synonyms="synonyms.txt" ignoreCase="true" expand="true" />
+ <filter class="solr.StopFilterFactory" ignoreCase="true" words="lang/stopwords_en.txt" />
+ <filter class="solr.LowerCaseFilterFactory" />
+ <filter class="solr.EnglishPossessiveFilterFactory" />
+ <filter class="solr.KeywordMarkerFilterFactory" protected="protwords.txt" />
<!-- Optionally you may want to use this less aggressive stemmer instead of PorterStemFilterFactory: <filter class="solr.EnglishMinimalStemFilterFactory"/> -->
- <filter class="solr.PorterStemFilterFactory"/>
+ <filter class="solr.PorterStemFilterFactory" />
</analyzer>
</fieldType>
<!-- A text field with defaults appropriate for English, plus aggressive word-splitting and autophrase features enabled. This field is just
like text_en, except it adds WordDelimiterFilter to enable splitting and matching of words on case-change, alpha numeric boundaries, and non-alphanumeric
chars. This means certain compound word cases will work, for example query "wi fi" will match document "WiFi" or "wi-fi". -->
- <fieldType name="text_en_splitting" class="solr.TextField" positionIncrementGap="100"
- autoGeneratePhraseQueries="true">
+ <fieldType name="text_en_splitting" class="solr.TextField" positionIncrementGap="100" autoGeneratePhraseQueries="true">
<analyzer type="index">
- <tokenizer class="solr.WhitespaceTokenizerFactory"/>
+ <tokenizer class="solr.WhitespaceTokenizerFactory" />
<!-- in this example, we will only use synonyms at query time <filter class="solr.SynonymFilterFactory" synonyms="index_synonyms.txt" ignoreCase="true"
expand="false"/> -->
<!-- Case insensitive stop word removal. -->
- <filter class="solr.StopFilterFactory" ignoreCase="true" words="lang/stopwords_en.txt"/>
- <filter class="solr.WordDelimiterFilterFactory" generateWordParts="1" generateNumberParts="1"
- catenateWords="1" catenateNumbers="1"
- catenateAll="0" splitOnCaseChange="1"/>
- <filter class="solr.LowerCaseFilterFactory"/>
- <filter class="solr.KeywordMarkerFilterFactory" protected="protwords.txt"/>
- <filter class="solr.PorterStemFilterFactory"/>
+ <filter class="solr.StopFilterFactory" ignoreCase="true" words="lang/stopwords_en.txt" />
+ <filter class="solr.WordDelimiterFilterFactory" generateWordParts="1" generateNumberParts="1" catenateWords="1" catenateNumbers="1"
+ catenateAll="0" splitOnCaseChange="1" />
+ <filter class="solr.LowerCaseFilterFactory" />
+ <filter class="solr.KeywordMarkerFilterFactory" protected="protwords.txt" />
+ <filter class="solr.PorterStemFilterFactory" />
</analyzer>
<analyzer type="query">
- <tokenizer class="solr.WhitespaceTokenizerFactory"/>
- <filter class="solr.SynonymFilterFactory" synonyms="synonyms.txt" ignoreCase="true" expand="true"/>
- <filter class="solr.StopFilterFactory" ignoreCase="true" words="lang/stopwords_en.txt"/>
- <filter class="solr.WordDelimiterFilterFactory" generateWordParts="1" generateNumberParts="1"
- catenateWords="0" catenateNumbers="0"
- catenateAll="0" splitOnCaseChange="1"/>
- <filter class="solr.LowerCaseFilterFactory"/>
- <filter class="solr.KeywordMarkerFilterFactory" protected="protwords.txt"/>
- <filter class="solr.PorterStemFilterFactory"/>
+ <tokenizer class="solr.WhitespaceTokenizerFactory" />
+ <filter class="solr.SynonymFilterFactory" synonyms="synonyms.txt" ignoreCase="true" expand="true" />
+ <filter class="solr.StopFilterFactory" ignoreCase="true" words="lang/stopwords_en.txt" />
+ <filter class="solr.WordDelimiterFilterFactory" generateWordParts="1" generateNumberParts="1" catenateWords="0" catenateNumbers="0"
+ catenateAll="0" splitOnCaseChange="1" />
+ <filter class="solr.LowerCaseFilterFactory" />
+ <filter class="solr.KeywordMarkerFilterFactory" protected="protwords.txt" />
+ <filter class="solr.PorterStemFilterFactory" />
</analyzer>
</fieldType>
<!-- Less flexible matching, but less false matches. Probably not ideal for product names, but may be good for SKUs. Can insert dashes in the
wrong place and still match. -->
- <fieldType name="text_en_splitting_tight" class="solr.TextField" positionIncrementGap="100"
- autoGeneratePhraseQueries="true">
+ <fieldType name="text_en_splitting_tight" class="solr.TextField" positionIncrementGap="100" autoGeneratePhraseQueries="true">
<analyzer>
- <tokenizer class="solr.WhitespaceTokenizerFactory"/>
- <filter class="solr.SynonymFilterFactory" synonyms="synonyms.txt" ignoreCase="true" expand="false"/>
- <filter class="solr.StopFilterFactory" ignoreCase="true" words="lang/stopwords_en.txt"/>
- <filter class="solr.WordDelimiterFilterFactory" generateWordParts="0" generateNumberParts="0"
- catenateWords="1" catenateNumbers="1"
- catenateAll="0"/>
- <filter class="solr.LowerCaseFilterFactory"/>
- <filter class="solr.KeywordMarkerFilterFactory" protected="protwords.txt"/>
- <filter class="solr.EnglishMinimalStemFilterFactory"/>
+ <tokenizer class="solr.WhitespaceTokenizerFactory" />
+ <filter class="solr.SynonymFilterFactory" synonyms="synonyms.txt" ignoreCase="true" expand="false" />
+ <filter class="solr.StopFilterFactory" ignoreCase="true" words="lang/stopwords_en.txt" />
+ <filter class="solr.WordDelimiterFilterFactory" generateWordParts="0" generateNumberParts="0" catenateWords="1" catenateNumbers="1"
+ catenateAll="0" />
+ <filter class="solr.LowerCaseFilterFactory" />
+ <filter class="solr.KeywordMarkerFilterFactory" protected="protwords.txt" />
+ <filter class="solr.EnglishMinimalStemFilterFactory" />
<!-- this filter can remove any duplicate tokens that appear at the same position - sometimes possible with WordDelimiterFilter in conjuncton
with stemming. -->
- <filter class="solr.RemoveDuplicatesTokenFilterFactory"/>
+ <filter class="solr.RemoveDuplicatesTokenFilterFactory" />
</analyzer>
</fieldType>
<!-- Just like text_general except it reverses the characters of each token, to enable more efficient leading wildcard queries. -->
<fieldType name="text_general_rev" class="solr.TextField" positionIncrementGap="100">
<analyzer type="index">
- <tokenizer class="solr.StandardTokenizerFactory"/>
- <filter class="solr.StopFilterFactory" ignoreCase="true" words="stopwords.txt"/>
- <filter class="solr.LowerCaseFilterFactory"/>
- <filter class="solr.ReversedWildcardFilterFactory" withOriginal="true" maxPosAsterisk="3" maxPosQuestion="2"
- maxFractionAsterisk="0.33"/>
+ <tokenizer class="solr.StandardTokenizerFactory" />
+ <filter class="solr.StopFilterFactory" ignoreCase="true" words="stopwords.txt" />
+ <filter class="solr.LowerCaseFilterFactory" />
+ <filter class="solr.ReversedWildcardFilterFactory" withOriginal="true" maxPosAsterisk="3" maxPosQuestion="2" maxFractionAsterisk="0.33" />
</analyzer>
<analyzer type="query">
- <tokenizer class="solr.StandardTokenizerFactory"/>
- <filter class="solr.SynonymFilterFactory" synonyms="synonyms.txt" ignoreCase="true" expand="true"/>
- <filter class="solr.StopFilterFactory" ignoreCase="true" words="stopwords.txt"/>
- <filter class="solr.LowerCaseFilterFactory"/>
+ <tokenizer class="solr.StandardTokenizerFactory" />
+ <filter class="solr.SynonymFilterFactory" synonyms="synonyms.txt" ignoreCase="true" expand="true" />
+ <filter class="solr.StopFilterFactory" ignoreCase="true" words="stopwords.txt" />
+ <filter class="solr.LowerCaseFilterFactory" />
</analyzer>
</fieldType>
@@ -398,89 +380,88 @@
<fieldType name="alphaOnlySort" class="solr.TextField" sortMissingLast="true" omitNorms="true">
<analyzer>
<!-- KeywordTokenizer does no actual tokenizing, so the entire input string is preserved as a single token -->
- <tokenizer class="solr.KeywordTokenizerFactory"/>
+ <tokenizer class="solr.KeywordTokenizerFactory" />
<!-- The LowerCase TokenFilter does what you expect, which can be when you want your sorting to be case insensitive -->
- <filter class="solr.LowerCaseFilterFactory"/>
+ <filter class="solr.LowerCaseFilterFactory" />
<!-- The TrimFilter removes any leading or trailing whitespace -->
- <filter class="solr.TrimFilterFactory"/>
+ <filter class="solr.TrimFilterFactory" />
<!-- The PatternReplaceFilter gives you the flexibility to use Java Regular expression to replace any sequence of characters matching a pattern
with an arbitrary replacement string, which may include back references to portions of the original string matched by the pattern. See the Java
Regular Expression documentation for more information on pattern and replacement string syntax. http://docs.oracle.com/javase/7/docs/api/java/util/regex/package-summary.html -->
- <filter class="solr.PatternReplaceFilterFactory" pattern="([^a-z])" replacement="" replace="all"/>
+ <filter class="solr.PatternReplaceFilterFactory" pattern="([^a-z])" replacement="" replace="all" />
</analyzer>
</fieldType>
<fieldtype name="phonetic" stored="false" indexed="true" class="solr.TextField">
<analyzer>
- <tokenizer class="solr.StandardTokenizerFactory"/>
- <filter class="solr.DoubleMetaphoneFilterFactory" inject="false"/>
+ <tokenizer class="solr.StandardTokenizerFactory" />
+ <filter class="solr.DoubleMetaphoneFilterFactory" inject="false" />
</analyzer>
</fieldtype>
<fieldtype name="payloads" stored="false" indexed="true" class="solr.TextField">
<analyzer>
- <tokenizer class="solr.WhitespaceTokenizerFactory"/>
+ <tokenizer class="solr.WhitespaceTokenizerFactory" />
<!-- The DelimitedPayloadTokenFilter can put payloads on tokens... for example, a token of "foo|1.4" would be indexed as "foo" with a payload
of 1.4f Attributes of the DelimitedPayloadTokenFilterFactory : "delimiter" - a one character delimiter. Default is | (pipe) "encoder" - how to
encode the following value into a playload float -> org.apache.lucene.analysis.payloads.FloatEncoder, integer -> o.a.l.a.p.IntegerEncoder identity
-> o.a.l.a.p.IdentityEncoder Fully Qualified class name implementing PayloadEncoder, Encoder must have a no arg constructor. -->
- <filter class="solr.DelimitedPayloadTokenFilterFactory" encoder="float"/>
+ <filter class="solr.DelimitedPayloadTokenFilterFactory" encoder="float" />
</analyzer>
</fieldtype>
<!-- lowercases the entire field value, keeping it as a single token. -->
<fieldType name="lowercase" class="solr.TextField" positionIncrementGap="100">
<analyzer>
- <tokenizer class="solr.KeywordTokenizerFactory"/>
- <filter class="solr.LowerCaseFilterFactory"/>
+ <tokenizer class="solr.KeywordTokenizerFactory" />
+ <filter class="solr.LowerCaseFilterFactory" />
</analyzer>
</fieldType>
<!-- Example of using PathHierarchyTokenizerFactory at index time, so queries for paths match documents at that path, or in descendent paths -->
<fieldType name="descendent_path" class="solr.TextField">
<analyzer type="index">
- <tokenizer class="solr.PathHierarchyTokenizerFactory" delimiter="/"/>
+ <tokenizer class="solr.PathHierarchyTokenizerFactory" delimiter="/" />
</analyzer>
<analyzer type="query">
- <tokenizer class="solr.KeywordTokenizerFactory"/>
+ <tokenizer class="solr.KeywordTokenizerFactory" />
</analyzer>
</fieldType>
<!-- Example of using PathHierarchyTokenizerFactory at query time, so queries for paths match documents at that path, or in ancestor paths -->
<fieldType name="ancestor_path" class="solr.TextField">
<analyzer type="index">
- <tokenizer class="solr.KeywordTokenizerFactory"/>
+ <tokenizer class="solr.KeywordTokenizerFactory" />
</analyzer>
<analyzer type="query">
- <tokenizer class="solr.PathHierarchyTokenizerFactory" delimiter="/"/>
+ <tokenizer class="solr.PathHierarchyTokenizerFactory" delimiter="/" />
</analyzer>
</fieldType>
<!-- since fields of this type are by default not stored or indexed, any data added to them will be ignored outright. -->
- <fieldtype name="ignored" stored="false" indexed="false" multiValued="true" class="solr.StrField"/>
+ <fieldtype name="ignored" stored="false" indexed="false" multiValued="true" class="solr.StrField" />
<!-- This point type indexes the coordinates as separate fields (subFields) If subFieldType is defined, it references a type, and a dynamic
field definition is created matching *___<typename>. Alternately, if subFieldSuffix is defined, that is used to create the subFields. Example:
if subFieldType="double", then the coordinates would be indexed in fields myloc_0___double,myloc_1___double. Example: if subFieldSuffix="_d"
then the coordinates would be indexed in fields myloc_0_d,myloc_1_d The subFields are an implementation detail of the fieldType, and end users
normally should not need to know about them. -->
- <fieldType name="point" class="solr.PointType" dimension="2" subFieldSuffix="_d"/>
+ <fieldType name="point" class="solr.PointType" dimension="2" subFieldSuffix="_d" />
<!-- A specialized field for geospatial search. If indexed, this fieldType must not be multivalued. -->
- <fieldType name="location" class="solr.LatLonType" subFieldSuffix="_coordinate"/>
+ <fieldType name="location" class="solr.LatLonType" subFieldSuffix="_coordinate" />
<!-- An alternative geospatial field type new to Solr 4. It supports multiValued and polygon shapes. For more information about this and other
Spatial fields new to Solr 4, see: http://wiki.apache.org/solr/SolrAdaptersForLuceneSpatial4 -->
- <fieldType name="location_rpt" class="solr.SpatialRecursivePrefixTreeFieldType" geo="true" distErrPct="0.025"
- maxDistErr="0.000009"
- units="degrees"/>
+ <fieldType name="location_rpt" class="solr.SpatialRecursivePrefixTreeFieldType" geo="true" distErrPct="0.025" maxDistErr="0.000009"
+ units="degrees" />
<!-- Money/currency field type. See http://wiki.apache.org/solr/MoneyFieldType Parameters: defaultCurrency: Specifies the default currency if
none specified. Defaults to "USD" precisionStep: Specifies the precisionStep for the TrieLong field used for the amount providerClass: Lets you
plug in other exchange provider backend: solr.FileExchangeRateProvider is the default and takes one parameter: currencyConfig: name of an xml
file holding exchange rates solr.OpenExchangeRatesOrgProvider uses rates from openexchangerates.org: ratesFileLocation: URL or path to rates
JSON file (default latest.json on the web) refreshInterval: Number of minutes between each rates fetch (default: 1440, min: 60) -->
- <fieldType name="currency" class="solr.CurrencyField" precisionStep="8" defaultCurrency="USD"
- currencyConfig="currency.xml"/>
+ <fieldType name="currency" class="solr.CurrencyField" precisionStep="8" defaultCurrency="USD" currencyConfig="currency.xml" />
+
<!-- some examples for different languages (generally ordered by ISO code) -->
@@ -489,6 +470,4 @@
default is fine for most applications. For more info: http://wiki.apache.org/solr/SchemaXml#Similarity -->
<!-- <similarity class="com.example.solr.CustomSimilarityFactory"> <str name="paramkey">param value</str> </similarity> -->
-
-
</schema>
diff --git a/ols-solr/src/main/resources/solr-conf/ontology/conf/solrconfig.xml b/ols-solr/src/main/solr-conf/ontology/conf/solrconfig.xml
similarity index 100%
rename from ols-solr/src/main/resources/solr-conf/ontology/conf/solrconfig.xml
rename to ols-solr/src/main/solr-conf/ontology/conf/solrconfig.xml
diff --git a/ols-solr/src/main/resources/solr-conf/ontology/conf/spellings.txt b/ols-solr/src/main/solr-conf/ontology/conf/spellings.txt
similarity index 100%
rename from ols-solr/src/main/resources/solr-conf/ontology/conf/spellings.txt
rename to ols-solr/src/main/solr-conf/ontology/conf/spellings.txt
diff --git a/ols-solr/src/main/resources/solr-conf/ontology/conf/stopwords.txt b/ols-solr/src/main/solr-conf/ontology/conf/stopwords.txt
similarity index 100%
rename from ols-solr/src/main/resources/solr-conf/ontology/conf/stopwords.txt
rename to ols-solr/src/main/solr-conf/ontology/conf/stopwords.txt
diff --git a/ols-solr/src/main/resources/solr-conf/ontology/conf/synonyms.txt b/ols-solr/src/main/solr-conf/ontology/conf/synonyms.txt
similarity index 100%
rename from ols-solr/src/main/resources/solr-conf/ontology/conf/synonyms.txt
rename to ols-solr/src/main/solr-conf/ontology/conf/synonyms.txt
diff --git a/ols-solr/src/main/resources/solr-conf/ontology/core.properties b/ols-solr/src/main/solr-conf/ontology/core.properties
similarity index 100%
rename from ols-solr/src/main/resources/solr-conf/ontology/core.properties
rename to ols-solr/src/main/solr-conf/ontology/core.properties
diff --git a/ols-solr/src/main/resources/solr-conf/solr.xml b/ols-solr/src/main/solr-conf/solr.xml
similarity index 100%
rename from ols-solr/src/main/resources/solr-conf/solr.xml
rename to ols-solr/src/main/solr-conf/solr.xml
diff --git a/ols-ui/ontologyWidget/relationalTree/css/ontology.css b/ols-ui/ontologyWidget/relationalTree/css/ontology.css
new file mode 100644
index 00000000..ac091c2b
--- /dev/null
+++ b/ols-ui/ontologyWidget/relationalTree/css/ontology.css
@@ -0,0 +1,34 @@
+
+ul {
+ margin-top: 0em;
+ margin-bottom: 0em;
+ margin-left: 0;
+ margin-right: 0;
+ padding-left: 5px;
+}
+
+.link {
+ fill: none;
+ stroke: gray;
+ stroke-width: 1px;
+}
+.collapsibleList li{
+ list-style-image:url(data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAsAAAALCAYAAACprHcmAAAAGXRFWHRTb2Z0d2FyZQBBZG9iZSBJbWFnZVJlYWR5ccllPAAAAIhJREFUeNq0kdEJwzAMRM9C3sPgz25iMlBG6EAm2xg8iVxd4o+CaUM/evAw6I5DyKHW+gDwdIojWGXO4ezKYM55SykhhLAkxxjSe99aa2dTYXAaC9T0C5uFjWaGTxKR68EP0rfdbsP/a2bYeJ5v4ekZ1zj8jlBVxBgXOKfPHJt3Hty5/cGXAAMAtmhC80lDcscAAAAASUVORK5CYII=);
+ cursor:auto;
+ padding: 0px;
+ margin: 10px;
+}
+
+li.collapsibleListOpen{
+ list-style-image:url(data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAsAAAALCAYAAACprHcmAAAAGXRFWHRTb2Z0d2FyZQBBZG9iZSBJbWFnZVJlYWR5ccllPAAAAJJJREFUeNqUkVEKAyEMRGPQLy8h+NmbyB5oj9ADyd5G8BL+xmZaP0pDu9uBh+AMQ4yu1nojortSFCYrUQ5l9wjmnLeUEjnnTHLOyb33rbX2bCoILsMALb+gmdEoIvRNzPw66A/5t9koxmgCYwwb/jROm6+MIVjPr/DyBA88dI/kvacQggH38JFD846FK6c/+BBgANzWSNTsv+CTAAAAAElFTkSuQmCC);
+ cursor:pointer;
+ padding: 0px;
+ margin: 10px;
+}
+
+li.collapsibleListClosed{
+ list-style-image:url(data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAsAAAALCAYAAACprHcmAAAAGXRFWHRTb2Z0d2FyZQBBZG9iZSBJbWFnZVJlYWR5ccllPAAAAKJJREFUeNqEkc0JxCAQhUfRg7EJweN2IikoJWxBkm4EexCvur4gi4kuO/Dw532O48i89y8ieje5Jk5zlKaz6RAArbW7MYYYYxNZa+Uxxj2EcGVyALsxCdF9B5gj4wgopW7rfiNf1fgzxFAbaa2/xrZt15hznuHRwKERWmZ+dGEJF7RnNFNKN7jPCx54tj6SEIKklJOwDx8cMh9oeNPfH/wIMABbu2PPHYUsbQAAAABJRU5ErkJggg==);
+ cursor:pointer;
+ padding: 0px;
+ margin: 10px;
+}
\ No newline at end of file
diff --git a/ols-ui/ontologyWidget/relationalTree/css/wirefy.css b/ols-ui/ontologyWidget/relationalTree/css/wirefy.css
new file mode 100644
index 00000000..d9f3446e
--- /dev/null
+++ b/ols-ui/ontologyWidget/relationalTree/css/wirefy.css
@@ -0,0 +1,3647 @@
+/* ============================================================
+
+Wirefy by Chris Da Sie
+Version: 3.0.3
+URL: https://github.com/cjdsie/wirefy
+Text Domain: Wirefy
+MIT License
+
+/* Import Base partial **Important Remove Partials That Aren't Needed**
+==================================================*/
+/* VENDOR - Default fall backs & external .scss files.
+========================================================================== */
+/*************************
+***** Normalize.css ******
+**** Version: 0.0.1 ******
+*************************/
+/*! normalize.css v2.1.2 | MIT License | git.io/normalize */
+/* ==========================================================================
+ HTML5 display definitions
+ ========================================================================== */
+/**
+ * Correct `block` display not defined in IE 8/9.
+ */
+@import url(modules/_breadcrumbs.css);
+article,
+aside,
+details,
+figcaption,
+figure,
+footer,
+header,
+hgroup,
+main,
+nav,
+section,
+summary {
+ display: block; }
+
+/**
+ * Correct `inline-block` display not defined in IE 8/9.
+ */
+audio,
+canvas,
+video {
+ display: inline-block; }
+
+/**
+ * Prevent modern browsers from displaying `audio` without controls.
+ * Remove excess height in iOS 5 devices.
+ */
+audio:not([controls]) {
+ display: none;
+ height: 0; }
+
+/**
+ * Address styling not present in IE 8/9.
+ */
+[hidden] {
+ display: none; }
+
+/* ==========================================================================
+ Base
+ ========================================================================== */
+/**
+ * 1. Set default font family to sans-serif.
+ * 2. Prevent iOS text size adjust after orientation change, without disabling
+ * user zoom.
+ */
+html {
+ font-family: sans-serif;
+ /* 1 */
+ -ms-text-size-adjust: 100%;
+ /* 2 */
+ -webkit-text-size-adjust: 100%;
+ /* 2 */ }
+
+/**
+ * Remove default margin.
+ */
+body {
+ margin: 0; }
+
+/* ==========================================================================
+ Links
+ ========================================================================== */
+/**
+ * Address `outline` inconsistency between Chrome and other browsers.
+ */
+a:focus {
+ outline: thin dotted; }
+a:active, a:hover {
+ outline: 0; }
+
+/**
+ * Improve readability when focused and also mouse hovered in all browsers.
+ */
+/* ==========================================================================
+ Typography
+ ========================================================================== */
+/**
+ * Address variable `h1` font-size and margin within `section` and `article`
+ * contexts in Firefox 4+, Safari 5, and Chrome.
+ */
+h1 {
+ font-size: 2em;
+ margin: .67em 0; }
+
+/**
+ * Address styling not present in IE 8/9, Safari 5, and Chrome.
+ */
+abbr[title] {
+ border-bottom: 1px dotted; }
+
+/**
+ * Address style set to `bolder` in Firefox 4+, Safari 5, and Chrome.
+ */
+b, strong {
+ font-weight: bold; }
+
+/**
+ * Address styling not present in Safari 5 and Chrome.
+ */
+dfn {
+ font-style: italic; }
+
+/**
+ * Address differences between Firefox and other browsers.
+ */
+hr {
+ -moz-box-sizing: content-box;
+ box-sizing: content-box;
+ height: 0; }
+
+/**
+ * Address styling not present in IE 8/9.
+ */
+mark {
+ background: #ff0;
+ color: #000; }
+
+/**
+ * Correct font family set oddly in Safari 5 and Chrome.
+ */
+code, kbd, pre, samp {
+ font-family: monospace, serif;
+ font-size: 1em; }
+
+/**
+ * Improve readability of pre-formatted text in all browsers.
+ */
+pre {
+ white-space: pre-wrap; }
+
+/**
+ * Set consistent quote types.
+ */
+q {
+ quotes: "\201C" "\201D" "\2018" "\2019"; }
+
+/**
+ * Address inconsistent and variable font size in all browsers.
+ */
+small {
+ font-size: 80%; }
+
+/**
+ * Prevent `sub` and `sup` affecting `line-height` in all browsers.
+ */
+sub {
+ font-size: 75%;
+ line-height: 0;
+ position: relative;
+ vertical-align: baseline; }
+
+sup {
+ font-size: 75%;
+ line-height: 0;
+ position: relative;
+ vertical-align: baseline;
+ top: -.5em; }
+
+sub {
+ bottom: -.25em; }
+
+/* ==========================================================================
+ Embedded content
+ ========================================================================== */
+/**
+ * Remove border when inside `a` element in IE 8/9.
+ */
+img {
+ border: 0; }
+
+/**
+ * Correct overflow displayed oddly in IE 9.
+ */
+svg:not(:root) {
+ overflow: hidden; }
+
+/* ==========================================================================
+ Figures
+ ========================================================================== */
+/**
+ * Address margin not present in IE 8/9 and Safari 5.
+ */
+figure {
+ margin: 0; }
+
+/* ==========================================================================
+ Forms
+ ========================================================================== */
+/**
+ * Define consistent border, margin, and padding.
+ */
+fieldset {
+ border: 1px solid #c0c0c0;
+ margin: 0 2px;
+ padding: .35em .625em .75em; }
+
+/**
+ * 1. Correct `color` not being inherited in IE 8/9.
+ * 2. Remove padding so people aren't caught out if they zero out fieldsets.
+ */
+legend {
+ border: 0;
+ /* 1 */
+ padding: 0;
+ /* 2 */ }
+
+/**
+ * 1. Correct font family not being inherited in all browsers.
+ * 2. Correct font size not being inherited in all browsers.
+ * 3. Address margins set differently in Firefox 4+, Safari 5, and Chrome.
+ */
+button,
+input,
+select,
+textarea {
+ font-family: inherit;
+ /* 1 */
+ font-size: 100%;
+ /* 2 */
+ margin: 0;
+ /* 3 */ }
+
+/**
+ * Address Firefox 4+ setting `line-height` on `input` using `!important` in
+ * the UA stylesheet.
+ */
+button,
+input {
+ line-height: normal; }
+
+/**
+ * Address inconsistent `text-transform` inheritance for `button` and `select`.
+ * All other form control elements do not inherit `text-transform` values.
+ * Correct `button` style inheritance in Chrome, Safari 5+, and IE 8+.
+ * Correct `select` style inheritance in Firefox 4+ and Opera.
+ */
+button,
+select {
+ text-transform: none; }
+
+/**
+ * 1. Avoid the WebKit bug in Android 4.0.* where (2) destroys native `audio`
+ * and `video` controls.
+ * 2. Correct inability to style clickable `input` types in iOS.
+ * 3. Improve usability and consistency of cursor style between image-type
+ * `input` and others.
+ */
+button,
+html input[type="button"] {
+ -webkit-appearance: button;
+ /* 2 */
+ cursor: pointer;
+ /* 3 */ }
+
+input[type="reset"], input[type="submit"] {
+ -webkit-appearance: button;
+ /* 2 */
+ cursor: pointer;
+ /* 3 */ }
+
+/**
+ * Re-set default cursor for disabled elements.
+ */
+button[disabled],
+html input[disabled] {
+ cursor: default; }
+
+/* Base - Base variable file along with starting points mixins & placeholders. ========================================================================== */
+/* Global Variables
+================================================= */
+/* Typography Variables
+========================= */
+/* Vendor Prefixing
+========================= */
+/* Grid Variables
+========================== */
+/*************************
+***** Mixin Library ******
+**** Version: 0.0.1 ******
+*************************/
+/* Image Rendering
+========================= */
+/* Fixes and Resets
+========================= */
+* {
+ -webkit-box-sizing: border-box;
+ -moz-box-sizing: border-box;
+ -ms-box-sizing: border-box;
+ -o-box-sizing: border-box;
+ box-sizing: border-box; }
+ *:first-child + html .row,
+ *:first-child + html .clearfix {
+ zoom: 1; }
+ *:after, *:before {
+ -webkit-box-sizing: border-box;
+ -moz-box-sizing: border-box;
+ -ms-box-sizing: border-box;
+ -o-box-sizing: border-box;
+ box-sizing: border-box; }
+
+/* Breakpoints
+========================= */
+/* Retina Displays
+========================= */
+/* Clearfix Hack
+========================= */
+/* Visually Hidden Focusable
+============================== */
+.visuallyhidden.focusable:active, .visuallyhidden.focusable:focus {
+ position: static;
+ clip: auto;
+ height: auto;
+ width: auto;
+ margin: 0;
+ overflow: visible; }
+
+/* Clear Floats
+========================= */
+/***************************
+**** Component Settings ****
+***************************/
+/* Border Radius
+========================= */
+/* Opacity - with IE8 fallback
+============================== */
+/* Center-align a block level element
+===================================== */
+/* Text Overflow
+============================== */
+/* Absolute Positioned
+============================== */
+/* Offscreen Text
+============================== */
+/* :hover, :active, :focus Styles
+============================== */
+/* Image Path
+============================== */
+/* Large
+============================== */
+/* Callout
+============================== */
+/* Link List
+============================== */
+/* HTML Elements
+================================================== */
+/* apply a natural box layout model to all elements */
+/* HTML & Body
+--------------------------------------------------*/
+* {
+ -webkit-box-sizing: border-box;
+ -moz-box-sizing: border-box;
+ box-sizing: border-box;
+ margin: 0;
+ padding: 0; }
+
+html {
+ background-color: #fff;
+ height: 100%;
+ font-size: 100%;
+ -webkit-overflow-scrolling: touch;
+ -webkit-tap-highlight-color: #4d4d4d;
+ -webkit-text-size-adjust: 100%;
+ -moz-text-size-adjust: 100%;
+ -ms-text-size-adjust: 100%;
+ -o-text-size-adjust: 100%;
+ text-size-adjust: 100%; }
+
+body {
+ width: 100%;
+ background-color: transparent url("../img//tmp/grid.png");
+ font-size: em(16);
+ line-height: 1.6875;
+ color: #333333;
+ -webkit-font-smoothing: antialiased;
+ /* Fix for webkit rendering */
+ -webkit-text-size-adjust: 100%;
+ -moz-text-size-adjust: 100%;
+ -ms-text-size-adjust: 100%;
+ -o-text-size-adjust: 100%;
+ text-size-adjust: 100%; }
+ body {
+ *zoom: 1; }
+ body:before, body:after {
+ content: "";
+ display: table; }
+ body:after {
+ clear: both; }
+
+h1,
+h2,
+h3,
+h4,
+h5,
+h6,
+hgroup,
+ul,
+ol,
+dd,
+p,
+figure,
+pre,
+table,
+fieldset,
+hr {
+ margin-bottom: 12px; }
+
+/* Containers
+--------------------------------------------------*/
+.container {
+ display: block;
+ margin-left: auto;
+ margin-right: auto;
+ width: 100%;
+ max-width: 100%;
+ padding: 0; }
+
+.content {
+ position: relative;
+ width: 100%; }
+
+/* FRAMEWORK - Structure & layout files including the grid function. ========================================================================== */
+/*************************
+****** Grid System *******
+**** Version: 0.0.2 ******
+*************************/
+/************************
+****** Typography *******
+**** Version: 0.0.1 *****
+*************************/
+/* Table of Content
+==================================================
+ 1.0 Variables
+ 2.0 Functions
+ 3.0 Mixins
+ 4.0 Base Styles
+ 4.0 Google Web Fonts Implementation
+ 5.0 Font Awesome Implementation
+ */
+/* Functions
+========================= */
+/* Mixins
+========================= */
+/* Google Web Fonts
+================================================== */
+/* Google Web Font Mixin by Ross Penman - http://rosspenman.com/sass-web-fonts
+*/
+/* Base Styles
+========================= */
+h1,
+h2,
+h3,
+h4,
+h5,
+h6 {
+ @import url(http://fonts.googleapis.com/css?family=Open|Sans);
+ color: #181818;
+ font-weight: 400;
+ text-rendering: optimizelegibility;
+ line-height: 1.5; }
+ h1 a,
+ h2 a,
+ h3 a,
+ h4 a,
+ h5 a,
+ h6 a {
+ font-weight: inherit; }
+
+h1 {
+ margin-bottom: 0.525em; }
+
+h2 {
+ margin-bottom: 0.65385em; }
+
+h3 {
+ margin-bottom: 0.7037em; }
+
+h4 {
+ margin-bottom: 1.04348em; }
+
+h5 {
+ margin-bottom: 1.11111em; }
+
+h6 {
+ margin-bottom: 1.25em;
+ text-transform: uppercase; }
+
+.subheader {
+ color: #777; }
+
+p {
+ margin: 0 0 1.5em;
+ -webkit-word-wrap: break-word;
+ -moz-word-wrap: break-word;
+ -ms-word-wrap: break-word;
+ -o-word-wrap: break-word;
+ word-wrap: break-word;
+ word-break: break-word;
+ -webkit-hyphens: auto;
+ -moz-hyphens: auto;
+ -ms-hyphens: auto;
+ -o-hyphens: auto;
+ hyphens: auto; }
+ p img {
+ margin-bottom: .375em; }
+ p.lead {
+ font-size: 1.3125em;
+ line-height: 0.10547em;
+ color: #777; }
+ p + p.no-indent {
+ text-indent: 0; }
+
+ol,
+ul,
+dl,
+address {
+ margin-bottom: 1.5em;
+ font-size: 1em;
+ line-height: 1.5; }
+
+small {
+ font-size: 0.625em; }
+
+blockquote:before, blockquote:after {
+ content: '';
+ content: none; }
+
+q {
+ quotes: none; }
+ q:before, q:after {
+ content: '';
+ content: none; }
+
+cite {
+ font-style: normal; }
+
+dl,
+dd {
+ margin-bottom: 1.5em; }
+
+dt {
+ font-weight: 700; }
+
+.dl-horizontal dt {
+ float: left;
+ clear: left;
+ width: 20.25%;
+ text-align: right; }
+.dl-horizontal dd {
+ margin-left: 22.78%; }
+
+abbr[title] {
+ border-bottom: 1px dotted #c7ced6;
+ cursor: help; }
+
+b,
+strong {
+ font-weight: 700; }
+
+dfn {
+ font-style: italic; }
+
+ins {
+ background-color: #f3f5f6;
+ color: #000;
+ text-decoration: none; }
+
+mark {
+ background-color: #f3f5f6;
+ color: 900;
+ font-style: italic;
+ font-weight: bold;
+ padding: 0 .25em; }
+
+pre,
+code,
+kbd,
+samp {
+ font-family: Monaco,Courier New,monospace;
+ font-size: 0.875em;
+ line-height: 1.5; }
+
+pre {
+ white-space: pre;
+ white-space: pre-wrap;
+ word-wrap: break-word; }
+
+sub {
+ position: relative;
+ font-size: 0.75em;
+ line-height: 0;
+ vertical-align: baselineheight;
+ bottom: -.25em; }
+
+sup {
+ position: relative;
+ font-size: 0.75em;
+ line-height: 0;
+ vertical-align: baselineheight;
+ top: -.5em; }
+
+em {
+ font-style: italic; }
+
+strong {
+ font-weight: bold;
+ color: #333; }
+
+del {
+ text-decoration: line-through; }
+
+/* Helpers - Added value to each file. (Optional)
+========================================================================== */
+/* IE Support
+================================================== */
+/* To ease the pain of dealing with special values for IE 6 - 10
+*/
+/* Color Palette
+================================================== */
+/* SASS Color Palettes by James Pearson - https://github.com/FearMediocrity/sass-color-palettes
+* Contact
+* -------------------------------------------------------
+* Email: james.pearson@thinkingincode.com
+*/
+/* Font Awesome
+================================================== */
+/* Font Awesome by Dave Gandy - http://fortawesome.github.com/Font-Awesome
+* Contact
+* -------------------------------------------------------
+* Email: dave@davegandy.com
+* Twitter: http://twitter.com/fortaweso_me
+* Work: Lead Product Designer @ http://kyruus.com
+*/
+@font-face {
+ font-family: 'FontAwesome';
+ src: url("../fonts//fontawesome-webfont.eot?v=3.1.1");
+ src: url("../fonts//fontawesome-webfont.eot?#iefix&v=3.1.1") format("embedded-opentype"), url("../fonts//fontawesome-webfont.woff?v=3.1.1") format("woff"), url("../fonts//fontawesome-webfont.ttf?v=3.1.1") format("truetype");
+ font-weight: normal;
+ font-style: normal; }
+/* Font Awesome styles
+ ------------------------------------------------------- */
+[class^="icon-"],
+[class*=" icon-"] {
+ font-family: FontAwesome;
+ font-weight: normal;
+ font-style: normal;
+ text-decoration: inherit;
+ -webkit-font-smoothing: antialiased;
+ *margin-right: .3em;
+ display: inline;
+ width: auto;
+ height: auto;
+ line-height: normal;
+ vertical-align: baseline;
+ background-image: none;
+ background-position: 0% 0%;
+ background-repeat: repeat;
+ margin-top: 0;
+ /* increased font size for icon-large */ }
+ [class^="icon-"]:before,
+ [class*=" icon-"]:before {
+ text-decoration: inherit;
+ display: inline-block;
+ speak: none; }
+ [class^="icon-"].icon-fixed-width,
+ [class*=" icon-"].icon-fixed-width {
+ display: inline-block;
+ width: 1.2857142857142858em;
+ text-align: center; }
+ [class^="icon-"].icon-fixed-width.icon-large,
+ [class*=" icon-"].icon-fixed-width.icon-large {
+ width: 1.5714285714285714em; }
+ [class^="icon-"].hide,
+ [class*=" icon-"].hide {
+ display: none; }
+ [class^="icon-"].pull-left,
+ [class*=" icon-"].pull-left {
+ margin-right: .3em; }
+ [class^="icon-"].pull-right,
+ [class*=" icon-"].pull-right {
+ margin-left: .3em; }
+
+/* makes the font 33% larger relative to the icon container */
+.icon-large:before {
+ vertical-align: -10%;
+ font-size: 1.3333333333333333em; }
+
+/* makes sure icons active on rollover in links */
+a [class^="icon-"],
+a [class*=" icon-"],
+a [class^="icon-"]:before,
+a [class*=" icon-"]:before {
+ display: inline; }
+
+ul.icons-ul {
+ list-style-type: none;
+ text-indent: -.71429em;
+ margin-left: 2.142857142857143em; }
+ ul.icons-ul > li .icon-li {
+ width: .7142857142857143em;
+ display: inline-block;
+ text-align: center; }
+
+.icon-muted {
+ color: #eee; }
+
+.icon-light {
+ color: #fff; }
+
+.icon-dark {
+ color: #333; }
+
+.icon-border {
+ border: solid 1px #eee;
+ padding: .2em .25em .15em;
+ -webkit-border-radius: 3px;
+ -moz-border-radius: 3px;
+ border-radius: 3px; }
+
+.icon-2x {
+ font-size: 2em; }
+ .icon-2x.icon-border {
+ border-width: 2px;
+ -webkit-border-radius: 4px;
+ -moz-border-radius: 4px;
+ border-radius: 4px; }
+
+.icon-3x {
+ font-size: 3em; }
+ .icon-3x.icon-border {
+ border-width: 3px;
+ -webkit-border-radius: 5px;
+ -moz-border-radius: 5px;
+ border-radius: 5px; }
+
+.icon-4x {
+ font-size: 4em; }
+ .icon-4x.icon-border {
+ border-width: 4px;
+ -webkit-border-radius: 6px;
+ -moz-border-radius: 6px;
+ border-radius: 6px; }
+
+.icon-5x {
+ font-size: 5em; }
+ .icon-5x.icon-border {
+ border-width: 5px;
+ -webkit-border-radius: 7px;
+ -moz-border-radius: 7px;
+ border-radius: 7px; }
+
+.pull-right {
+ float: right; }
+
+.pull-left {
+ float: left; }
+
+/* BOOTSTRAP SPECIFIC CLASSES
+ * -------------------------- */
+/* Bootstrap 2.0 sprites.less reset */
+/* more sprites.less reset */
+.icon-white {
+ background-image: none; }
+
+.nav-pills > .active > a > [class^="icon-"],
+.nav-pills > .active > a > [class*=" icon-"] {
+ background-image: none; }
+
+.nav-list > .active > a > [class^="icon-"],
+.nav-list > .active > a > [class*=" icon-"] {
+ background-image: none; }
+
+.navbar-inverse .nav > .active > a > [class^="icon-"],
+.navbar-inverse .nav > .active > a > [class*=" icon-"] {
+ background-image: none; }
+
+.dropdown-menu > li > a:hover > [class^="icon-"],
+.dropdown-menu > li > a:hover > [class*=" icon-"] {
+ background-image: none; }
+.dropdown-menu > .active > a > [class^="icon-"],
+.dropdown-menu > .active > a > [class*=" icon-"] {
+ background-image: none; }
+
+.dropdown-submenu:hover > a > [class^="icon-"],
+.dropdown-submenu:hover > a > [class*=" icon-"] {
+ background-image: none; }
+
+/* keeps Bootstrap styles with and without icons the same */
+.btn[class^="icon-"].icon-large, .btn[class*=" icon-"].icon-large,
+.nav[class^="icon-"].icon-large,
+.nav[class*=" icon-"].icon-large {
+ line-height: .9em; }
+.btn[class^="icon-"].icon-spin, .btn[class*=" icon-"].icon-spin,
+.nav[class^="icon-"].icon-spin,
+.nav[class*=" icon-"].icon-spin {
+ display: inline-block; }
+
+.nav-tabs[class^="icon-"], .nav-tabs[class*=" icon-"],
+.nav-pills[class^="icon-"],
+.nav-pills[class*=" icon-"] {
+ line-height: .9em; }
+ .nav-tabs[class^="icon-"].icon-large, .nav-tabs[class*=" icon-"].icon-large,
+ .nav-pills[class^="icon-"].icon-large,
+ .nav-pills[class*=" icon-"].icon-large {
+ line-height: .9em; }
+
+.btn[class^="icon-"].pull-left.icon-2x, .btn[class^="icon-"].pull-right.icon-2x, .btn[class*=" icon-"].pull-left.icon-2x, .btn[class*=" icon-"].pull-right.icon-2x {
+ margin-top: .18em; }
+.btn[class^="icon-"].icon-spin.icon-large, .btn[class*=" icon-"].icon-spin.icon-large {
+ line-height: .8em; }
+.btn.btn-small[class^="icon-"].pull-left.icon-2x, .btn.btn-small[class^="icon-"].pull-right.icon-2x, .btn.btn-small[class*=" icon-"].pull-left.icon-2x, .btn.btn-small[class*=" icon-"].pull-right.icon-2x {
+ margin-top: .25em; }
+.btn.btn-large[class^="icon-"], .btn.btn-large[class*=" icon-"] {
+ margin-top: 0; }
+ .btn.btn-large[class^="icon-"].pull-left.icon-2x, .btn.btn-large[class^="icon-"].pull-right.icon-2x, .btn.btn-large[class*=" icon-"].pull-left.icon-2x, .btn.btn-large[class*=" icon-"].pull-right.icon-2x {
+ margin-top: .05em; }
+ .btn.btn-large[class^="icon-"].pull-left.icon-2x, .btn.btn-large[class^="icon-"].pull-left.icon-2x, .btn.btn-large[class*=" icon-"].pull-left.icon-2x, .btn.btn-large[class*=" icon-"].pull-left.icon-2x {
+ margin-right: .2em; }
+ .btn.btn-large[class^="icon-"].pull-right.icon-2x, .btn.btn-large[class^="icon-"].pull-right.icon-2x, .btn.btn-large[class*=" icon-"].pull-right.icon-2x, .btn.btn-large[class*=" icon-"].pull-right.icon-2x {
+ margin-left: .2em; }
+
+/* EXTRAS
+ * -------------------------- */
+/* Stacked and layered icon */
+.icon-stack {
+ position: relative;
+ display: inline-block;
+ width: 2em;
+ height: 2em;
+ line-height: 2em;
+ vertical-align: -35%; }
+ .icon-stack[class^="icon-"], .icon-stack[class*=" icon-"] {
+ display: block;
+ text-align: center;
+ position: absolute;
+ width: 100%;
+ height: 100%;
+ font-size: 1em;
+ line-height: inherit;
+ *line-height: 2em; }
+ .icon-stack .icon-stack-base {
+ font-size: 2em;
+ *line-height: 1em; }
+
+/* Animated rotating icon */
+.icon-spin {
+ display: inline-block;
+ -moz-animation: spin 2s infinite linear;
+ -o-animation: spin 2s infinite linear;
+ -webkit-animation: spin 2s infinite linear;
+ animation: spin 2s infinite linear; }
+
+@-moz-keyframes spin {
+ 0% {
+ -moz-transform: rotate(0deg); }
+ 100% {
+ -moz-transform: rotate(359deg); } }
+@-webkit-keyframes spin {
+ 0% {
+ -webkit-transform: rotate(0deg); }
+ 100% {
+ -webkit-transform: rotate(359deg); } }
+@-o-keyframes spin {
+ 0% {
+ -o-transform: rotate(0deg); }
+ 100% {
+ -o-transform: rotate(359deg); } }
+@-ms-keyframes spin {
+ 0% {
+ -ms-transform: rotate(0deg); }
+ 100% {
+ -ms-transform: rotate(359deg); } }
+@keyframes spin {
+ 0% {
+ transform: rotate(0deg); }
+ 100% {
+ transform: rotate(359deg); } }
+/* Icon rotations and mirroring */
+.icon-rotate-90:before {
+ -webkit-transform: rotate(90deg);
+ -moz-transform: rotate(90deg);
+ -ms-transform: rotate(90deg);
+ -o-transform: rotate(90deg);
+ transform: rotate(90deg);
+ filter: progid:DXImageTransform.Microsoft.BasicImage(rotation=1); }
+
+.icon-rotate-180:before {
+ -webkit-transform: rotate(180deg);
+ -moz-transform: rotate(180deg);
+ -ms-transform: rotate(180deg);
+ -o-transform: rotate(180deg);
+ transform: rotate(180deg);
+ filter: progid:DXImageTransform.Microsoft.BasicImage(rotation=2); }
+
+.icon-rotate-270:before {
+ -webkit-transform: rotate(270deg);
+ -moz-transform: rotate(270deg);
+ -ms-transform: rotate(270deg);
+ -o-transform: rotate(270deg);
+ transform: rotate(270deg);
+ filter: progid:DXImageTransform.Microsoft.BasicImage(rotation=3); }
+
+.icon-flip-horizontal:before {
+ -webkit-transform: scale(-1, 1);
+ -moz-transform: scale(-1, 1);
+ -ms-transform: scale(-1, 1);
+ -o-transform: scale(-1, 1);
+ transform: scale(-1, 1); }
+
+.icon-flip-vertical:before {
+ -webkit-transform: scale(1, -1);
+ -moz-transform: scale(1, -1);
+ -ms-transform: scale(1, -1);
+ -o-transform: scale(1, -1);
+ transform: scale(1, -1); }
+
+/* Font Awesome uses the Unicode Private Use Area (PUA) to ensure screen
+ readers do not read off random characters that represent icons */
+.icon-glass:before {
+ content: "\f000"; }
+
+.icon-music:before {
+ content: "\f001"; }
+
+.icon-search:before {
+ content: "\f002"; }
+
+.icon-envelope:before {
+ content: "\f003"; }
+
+.icon-heart:before {
+ content: "\f004"; }
+
+.icon-star:before {
+ content: "\f005"; }
+
+.icon-star-empty:before {
+ content: "\f006"; }
+
+.icon-user:before {
+ content: "\f007"; }
+
+.icon-film:before {
+ content: "\f008"; }
+
+.icon-th-large:before {
+ content: "\f009"; }
+
+.icon-th:before {
+ content: "\f00a"; }
+
+.icon-th-list:before {
+ content: "\f00b"; }
+
+.icon-ok:before {
+ content: "\f00c"; }
+
+.icon-remove:before {
+ content: "\f00d"; }
+
+.icon-zoom-in:before {
+ content: "\f00e"; }
+
+.icon-zoom-out:before {
+ content: "\f010"; }
+
+.icon-off:before {
+ content: "\f011"; }
+
+.icon-signal:before {
+ content: "\f012"; }
+
+.icon-cog:before {
+ content: "\f013"; }
+
+.icon-trash:before {
+ content: "\f014"; }
+
+.icon-home:before {
+ content: "\f015"; }
+
+.icon-file:before {
+ content: "\f016"; }
+
+.icon-time:before {
+ content: "\f017"; }
+
+.icon-road:before {
+ content: "\f018"; }
+
+.icon-download-alt:before {
+ content: "\f019"; }
+
+.icon-download:before {
+ content: "\f01a"; }
+
+.icon-upload:before {
+ content: "\f01b"; }
+
+.icon-inbox:before {
+ content: "\f01c"; }
+
+.icon-play-circle:before {
+ content: "\f01d"; }
+
+.icon-repeat:before, .icon-rotate-right:before {
+ content: "\f01e"; }
+
+/* F020 doesn't work in Safari. all shifted one down */
+.icon-refresh:before {
+ content: "\f021"; }
+
+.icon-list-alt:before {
+ content: "\f022"; }
+
+.icon-lock:before {
+ content: "\f023"; }
+
+.icon-flag:before {
+ content: "\f024"; }
+
+.icon-headphones:before {
+ content: "\f025"; }
+
+.icon-volume-off:before {
+ content: "\f026"; }
+
+.icon-volume-down:before {
+ content: "\f027"; }
+
+.icon-volume-up:before {
+ content: "\f028"; }
+
+.icon-qrcode:before {
+ content: "\f029"; }
+
+.icon-barcode:before {
+ content: "\f02a"; }
+
+.icon-tag:before {
+ content: "\f02b"; }
+
+.icon-tags:before {
+ content: "\f02c"; }
+
+.icon-book:before {
+ content: "\f02d"; }
+
+.icon-bookmark:before {
+ content: "\f02e"; }
+
+.icon-print:before {
+ content: "\f02f"; }
+
+.icon-camera:before {
+ content: "\f030"; }
+
+.icon-font:before {
+ content: "\f031"; }
+
+.icon-bold:before {
+ content: "\f032"; }
+
+.icon-italic:before {
+ content: "\f033"; }
+
+.icon-text-height:before {
+ content: "\f034"; }
+
+.icon-text-width:before {
+ content: "\f035"; }
+
+.icon-align-left:before {
+ content: "\f036"; }
+
+.icon-align-center:before {
+ content: "\f037"; }
+
+.icon-align-right:before {
+ content: "\f038"; }
+
+.icon-align-justify:before {
+ content: "\f039"; }
+
+.icon-list:before {
+ content: "\f03a"; }
+
+.icon-indent-left:before {
+ content: "\f03b"; }
+
+.icon-indent-right:before {
+ content: "\f03c"; }
+
+.icon-facetime-video:before {
+ content: "\f03d"; }
+
+.icon-picture:before {
+ content: "\f03e"; }
+
+.icon-pencil:before {
+ content: "\f040"; }
+
+.icon-map-marker:before {
+ content: "\f041"; }
+
+.icon-adjust:before {
+ content: "\f042"; }
+
+.icon-tint:before {
+ content: "\f043"; }
+
+.icon-edit:before {
+ content: "\f044"; }
+
+.icon-share:before {
+ content: "\f045"; }
+
+.icon-check:before {
+ content: "\f046"; }
+
+.icon-move:before {
+ content: "\f047"; }
+
+.icon-step-backward:before {
+ content: "\f048"; }
+
+.icon-fast-backward:before {
+ content: "\f049"; }
+
+.icon-backward:before {
+ content: "\f04a"; }
+
+.icon-play:before {
+ content: "\f04b"; }
+
+.icon-pause:before {
+ content: "\f04c"; }
+
+.icon-stop:before {
+ content: "\f04d"; }
+
+.icon-forward:before {
+ content: "\f04e"; }
+
+.icon-fast-forward:before {
+ content: "\f050"; }
+
+.icon-step-forward:before {
+ content: "\f051"; }
+
+.icon-eject:before {
+ content: "\f052"; }
+
+.icon-chevron-left:before {
+ content: "\f053"; }
+
+.icon-chevron-right:before {
+ content: "\f054"; }
+
+.icon-plus-sign:before {
+ content: "\f055"; }
+
+.icon-minus-sign:before {
+ content: "\f056"; }
+
+.icon-remove-sign:before {
+ content: "\f057"; }
+
+.icon-ok-sign:before {
+ content: "\f058"; }
+
+.icon-question-sign:before {
+ content: "\f059"; }
+
+.icon-info-sign:before {
+ content: "\f05a"; }
+
+.icon-screenshot:before {
+ content: "\f05b"; }
+
+.icon-remove-circle:before {
+ content: "\f05c"; }
+
+.icon-ok-circle:before {
+ content: "\f05d"; }
+
+.icon-ban-circle:before {
+ content: "\f05e"; }
+
+.icon-arrow-left:before {
+ content: "\f060"; }
+
+.icon-arrow-right:before {
+ content: "\f061"; }
+
+.icon-arrow-up:before {
+ content: "\f062"; }
+
+.icon-arrow-down:before {
+ content: "\f063"; }
+
+.icon-share-alt:before, .icon-mail-forward:before {
+ content: "\f064"; }
+
+.icon-resize-full:before {
+ content: "\f065"; }
+
+.icon-resize-small:before {
+ content: "\f066"; }
+
+.icon-plus:before {
+ content: "\f067"; }
+
+.icon-minus:before {
+ content: "\f068"; }
+
+.icon-asterisk:before {
+ content: "\f069"; }
+
+.icon-exclamation-sign:before {
+ content: "\f06a"; }
+
+.icon-gift:before {
+ content: "\f06b"; }
+
+.icon-leaf:before {
+ content: "\f06c"; }
+
+.icon-fire:before {
+ content: "\f06d"; }
+
+.icon-eye-open:before {
+ content: "\f06e"; }
+
+.icon-eye-close:before {
+ content: "\f070"; }
+
+.icon-warning-sign:before {
+ content: "\f071"; }
+
+.icon-plane:before {
+ content: "\f072"; }
+
+.icon-calendar:before {
+ content: "\f073"; }
+
+.icon-random:before {
+ content: "\f074"; }
+
+.icon-comment:before {
+ content: "\f075"; }
+
+.icon-magnet:before {
+ content: "\f076"; }
+
+.icon-chevron-up:before {
+ content: "\f077"; }
+
+.icon-chevron-down:before {
+ content: "\f078"; }
+
+.icon-retweet:before {
+ content: "\f079"; }
+
+.icon-shopping-cart:before {
+ content: "\f07a"; }
+
+.icon-folder-close:before {
+ content: "\f07b"; }
+
+.icon-folder-open:before {
+ content: "\f07c"; }
+
+.icon-resize-vertical:before {
+ content: "\f07d"; }
+
+.icon-resize-horizontal:before {
+ content: "\f07e"; }
+
+.icon-bar-chart:before {
+ content: "\f080"; }
+
+.icon-twitter-sign:before {
+ content: "\f081"; }
+
+.icon-facebook-sign:before {
+ content: "\f082"; }
+
+.icon-camera-retro:before {
+ content: "\f083"; }
+
+.icon-key:before {
+ content: "\f084"; }
+
+.icon-cogs:before {
+ content: "\f085"; }
+
+.icon-comments:before {
+ content: "\f086"; }
+
+.icon-thumbs-up:before {
+ content: "\f087"; }
+
+.icon-thumbs-down:before {
+ content: "\f088"; }
+
+.icon-star-half:before {
+ content: "\f089"; }
+
+.icon-heart-empty:before {
+ content: "\f08a"; }
+
+.icon-signout:before {
+ content: "\f08b"; }
+
+.icon-linkedin-sign:before {
+ content: "\f08c"; }
+
+.icon-pushpin:before {
+ content: "\f08d"; }
+
+.icon-external-link:before {
+ content: "\f08e"; }
+
+.icon-signin:before {
+ content: "\f090"; }
+
+.icon-trophy:before {
+ content: "\f091"; }
+
+.icon-github-sign:before {
+ content: "\f092"; }
+
+.icon-upload-alt:before {
+ content: "\f093"; }
+
+.icon-lemon:before {
+ content: "\f094"; }
+
+.icon-phone:before {
+ content: "\f095"; }
+
+.icon-check-empty:before {
+ content: "\f096"; }
+
+.icon-bookmark-empty:before {
+ content: "\f097"; }
+
+.icon-phone-sign:before {
+ content: "\f098"; }
+
+.icon-twitter:before {
+ content: "\f099"; }
+
+.icon-facebook:before {
+ content: "\f09a"; }
+
+.icon-github:before {
+ content: "\f09b"; }
+
+.icon-unlock:before {
+ content: "\f09c"; }
+
+.icon-credit-card:before {
+ content: "\f09d"; }
+
+.icon-rss:before {
+ content: "\f09e"; }
+
+.icon-hdd:before {
+ content: "\f0a0"; }
+
+.icon-bullhorn:before {
+ content: "\f0a1"; }
+
+.icon-bell:before {
+ content: "\f0a2"; }
+
+.icon-certificate:before {
+ content: "\f0a3"; }
+
+.icon-hand-right:before {
+ content: "\f0a4"; }
+
+.icon-hand-left:before {
+ content: "\f0a5"; }
+
+.icon-hand-up:before {
+ content: "\f0a6"; }
+
+.icon-hand-down:before {
+ content: "\f0a7"; }
+
+.icon-circle-arrow-left:before {
+ content: "\f0a8"; }
+
+.icon-circle-arrow-right:before {
+ content: "\f0a9"; }
+
+.icon-circle-arrow-up:before {
+ content: "\f0aa"; }
+
+.icon-circle-arrow-down:before {
+ content: "\f0ab"; }
+
+.icon-globe:before {
+ content: "\f0ac"; }
+
+.icon-wrench:before {
+ content: "\f0ad"; }
+
+.icon-tasks:before {
+ content: "\f0ae"; }
+
+.icon-filter:before {
+ content: "\f0b0"; }
+
+.icon-briefcase:before {
+ content: "\f0b1"; }
+
+.icon-fullscreen:before {
+ content: "\f0b2"; }
+
+.icon-group:before {
+ content: "\f0c0"; }
+
+.icon-link:before {
+ content: "\f0c1"; }
+
+.icon-cloud:before {
+ content: "\f0c2"; }
+
+.icon-beaker:before {
+ content: "\f0c3"; }
+
+.icon-cut:before {
+ content: "\f0c4"; }
+
+.icon-copy:before {
+ content: "\f0c5"; }
+
+.icon-paper-clip:before {
+ content: "\f0c6"; }
+
+.icon-save:before {
+ content: "\f0c7"; }
+
+.icon-sign-blank:before {
+ content: "\f0c8"; }
+
+.icon-reorder:before {
+ content: "\f0c9"; }
+
+.icon-list-ul:before {
+ content: "\f0ca"; }
+
+.icon-list-ol:before {
+ content: "\f0cb"; }
+
+.icon-strikethrough:before {
+ content: "\f0cc"; }
+
+.icon-underline:before {
+ content: "\f0cd"; }
+
+.icon-table:before {
+ content: "\f0ce"; }
+
+.icon-magic:before {
+ content: "\f0d0"; }
+
+.icon-truck:before {
+ content: "\f0d1"; }
+
+.icon-pinterest:before {
+ content: "\f0d2"; }
+
+.icon-pinterest-sign:before {
+ content: "\f0d3"; }
+
+.icon-google-plus-sign:before {
+ content: "\f0d4"; }
+
+.icon-google-plus:before {
+ content: "\f0d5"; }
+
+.icon-money:before {
+ content: "\f0d6"; }
+
+.icon-caret-down:before {
+ content: "\f0d7"; }
+
+.icon-caret-up:before {
+ content: "\f0d8"; }
+
+.icon-caret-left:before {
+ content: "\f0d9"; }
+
+.icon-caret-right:before {
+ content: "\f0da"; }
+
+.icon-columns:before {
+ content: "\f0db"; }
+
+.icon-sort:before {
+ content: "\f0dc"; }
+
+.icon-sort-down:before {
+ content: "\f0dd"; }
+
+.icon-sort-up:before {
+ content: "\f0de"; }
+
+.icon-envelope-alt:before {
+ content: "\f0e0"; }
+
+.icon-linkedin:before {
+ content: "\f0e1"; }
+
+.icon-undo:before, .icon-rotate-left:before {
+ content: "\f0e2"; }
+
+.icon-legal:before {
+ content: "\f0e3"; }
+
+.icon-dashboard:before {
+ content: "\f0e4"; }
+
+.icon-comment-alt:before {
+ content: "\f0e5"; }
+
+.icon-comments-alt:before {
+ content: "\f0e6"; }
+
+.icon-bolt:before {
+ content: "\f0e7"; }
+
+.icon-sitemap:before {
+ content: "\f0e8"; }
+
+.icon-umbrella:before {
+ content: "\f0e9"; }
+
+.icon-paste:before {
+ content: "\f0ea"; }
+
+.icon-lightbulb:before {
+ content: "\f0eb"; }
+
+.icon-exchange:before {
+ content: "\f0ec"; }
+
+.icon-cloud-download:before {
+ content: "\f0ed"; }
+
+.icon-cloud-upload:before {
+ content: "\f0ee"; }
+
+.icon-user-md:before {
+ content: "\f0f0"; }
+
+.icon-stethoscope:before {
+ content: "\f0f1"; }
+
+.icon-suitcase:before {
+ content: "\f0f2"; }
+
+.icon-bell-alt:before {
+ content: "\f0f3"; }
+
+.icon-coffee:before {
+ content: "\f0f4"; }
+
+.icon-food:before {
+ content: "\f0f5"; }
+
+.icon-file-alt:before {
+ content: "\f0f6"; }
+
+.icon-building:before {
+ content: "\f0f7"; }
+
+.icon-hospital:before {
+ content: "\f0f8"; }
+
+.icon-ambulance:before {
+ content: "\f0f9"; }
+
+.icon-medkit:before {
+ content: "\f0fa"; }
+
+.icon-fighter-jet:before {
+ content: "\f0fb"; }
+
+.icon-beer:before {
+ content: "\f0fc"; }
+
+.icon-h-sign:before {
+ content: "\f0fd"; }
+
+.icon-plus-sign-alt:before {
+ content: "\f0fe"; }
+
+.icon-double-angle-left:before {
+ content: "\f100"; }
+
+.icon-double-angle-right:before {
+ content: "\f101"; }
+
+.icon-double-angle-up:before {
+ content: "\f102"; }
+
+.icon-double-angle-down:before {
+ content: "\f103"; }
+
+.icon-angle-left:before {
+ content: "\f104"; }
+
+.icon-angle-right:before {
+ content: "\f105"; }
+
+.icon-angle-up:before {
+ content: "\f106"; }
+
+.icon-angle-down:before {
+ content: "\f107"; }
+
+.icon-desktop:before {
+ content: "\f108"; }
+
+.icon-laptop:before {
+ content: "\f109"; }
+
+.icon-tablet:before {
+ content: "\f10a"; }
+
+.icon-mobile-phone:before {
+ content: "\f10b"; }
+
+.icon-circle-blank:before {
+ content: "\f10c"; }
+
+.icon-quote-left:before {
+ content: "\f10d"; }
+
+.icon-quote-right:before {
+ content: "\f10e"; }
+
+.icon-spinner:before {
+ content: "\f110"; }
+
+.icon-circle:before {
+ content: "\f111"; }
+
+.icon-reply:before, .icon-mail-reply:before {
+ content: "\f112"; }
+
+.icon-folder-close-alt:before {
+ content: "\f114"; }
+
+.icon-folder-open-alt:before {
+ content: "\f115"; }
+
+.icon-expand-alt:before {
+ content: "\f116"; }
+
+.icon-collapse-alt:before {
+ content: "\f117"; }
+
+.icon-smile:before {
+ content: "\f118"; }
+
+.icon-frown:before {
+ content: "\f119"; }
+
+.icon-meh:before {
+ content: "\f11a"; }
+
+.icon-gamepad:before {
+ content: "\f11b"; }
+
+.icon-keyboard:before {
+ content: "\f11c"; }
+
+.icon-flag-alt:before {
+ content: "\f11d"; }
+
+.icon-flag-checkered:before {
+ content: "\f11e"; }
+
+.icon-terminal:before {
+ content: "\f120"; }
+
+.icon-code:before {
+ content: "\f121"; }
+
+.icon-reply-all:before, .icon-mail-reply-all:before {
+ content: "\f122"; }
+
+.icon-star-half-full:before, .icon-star-half-empty:before {
+ content: "\f123"; }
+
+.icon-location-arrow:before {
+ content: "\f124"; }
+
+.icon-crop:before {
+ content: "\f125"; }
+
+.icon-code-fork:before {
+ content: "\f126"; }
+
+.icon-unlink:before {
+ content: "\f127"; }
+
+.icon-question:before {
+ content: "\f128"; }
+
+.icon-info:before {
+ content: "\f129"; }
+
+.icon-exclamation:before {
+ content: "\f12a"; }
+
+.icon-superscript:before {
+ content: "\f12b"; }
+
+.icon-subscript:before {
+ content: "\f12c"; }
+
+.icon-eraser:before {
+ content: "\f12d"; }
+
+.icon-puzzle-piece:before {
+ content: "\f12e"; }
+
+.icon-microphone:before {
+ content: "\f130"; }
+
+.icon-microphone-off:before {
+ content: "\f131"; }
+
+.icon-shield:before {
+ content: "\f132"; }
+
+.icon-calendar-empty:before {
+ content: "\f133"; }
+
+.icon-fire-extinguisher:before {
+ content: "\f134"; }
+
+.icon-rocket:before {
+ content: "\f135"; }
+
+.icon-maxcdn:before {
+ content: "\f136"; }
+
+.icon-chevron-sign-left:before {
+ content: "\f137"; }
+
+.icon-chevron-sign-right:before {
+ content: "\f138"; }
+
+.icon-chevron-sign-up:before {
+ content: "\f139"; }
+
+.icon-chevron-sign-down:before {
+ content: "\f13a"; }
+
+.icon-html5:before {
+ content: "\f13b"; }
+
+.icon-css3:before {
+ content: "\f13c"; }
+
+.icon-anchor:before {
+ content: "\f13d"; }
+
+.icon-unlock-alt:before {
+ content: "\f13e"; }
+
+.icon-bullseye:before {
+ content: "\f140"; }
+
+.icon-ellipsis-horizontal:before {
+ content: "\f141"; }
+
+.icon-ellipsis-vertical:before {
+ content: "\f142"; }
+
+.icon-rss-sign:before {
+ content: "\f143"; }
+
+.icon-play-sign:before {
+ content: "\f144"; }
+
+.icon-ticket:before {
+ content: "\f145"; }
+
+.icon-minus-sign-alt:before {
+ content: "\f146"; }
+
+.icon-check-minus:before {
+ content: "\f147"; }
+
+.icon-level-up:before {
+ content: "\f148"; }
+
+.icon-level-down:before {
+ content: "\f149"; }
+
+.icon-check-sign:before {
+ content: "\f14a"; }
+
+.icon-edit-sign:before {
+ content: "\f14b"; }
+
+.icon-external-link-sign:before {
+ content: "\f14c"; }
+
+.icon-share-sign:before {
+ content: "\f14d"; }
+
+/* MODULES - Individual site elements.
+========================================================================== */
+/************************
+****** CSS Animation *******
+**** Version: 0.0.1 *****
+*************************/
+/* Animations
+========================= */
+/* Keyframes
+========================= */
+/************************
+***** Buttons ******
+**** Version: 0.0.3 ****
+**** Updated for SASS 3.3.5 *****
+*************************/
+/************************
+****** Blockquotes *******
+**** Version: 0.0.1 *****
+*************************/
+blockquote {
+ font-size: inherit;
+ line-height: inherit;
+ color: #777;
+ font-style: italic;
+ margin: 0 0 18px;
+ padding: 6px 12px 0 24px;
+ border-left: 1px solid #ddd; }
+ blockquote p {
+ font-size: inherit;
+ line-height: 1.5;
+ color: #777;
+ font-style: italic; }
+ blockquote cite {
+ display: block;
+ font-size: 0.75em;
+ color: gray; }
+ blockquote cite:before {
+ content: "\2014 \0020"; }
+ blockquote cite a {
+ color: gray; }
+ blockquote cite a:visited {
+ color: gray; }
+
+/* Lists
+--------------------------------------------------*/
+ul,
+ol {
+ margin-bottom: 18px; }
+
+ul {
+ list-style: none outside; }
+ ul.square, ul.circle, ul.disc {
+ margin-left: 18px; }
+ ul.square {
+ list-style: square outside; }
+ ul.circle {
+ list-style: circle outside; }
+ ul.disc {
+ list-style: disc outside; }
+ ul ul,
+ ul ol {
+ margin: 6px 0 6px 18px;
+ font-size: 90%; }
+
+ol {
+ list-style: decimal;
+ margin-left: 18px; }
+ ol ol,
+ ol ul {
+ margin: 6px 0 6px 18px;
+ font-size: 90%; }
+
+ul ul li,
+ul ol li,
+ol ul li,
+ol ol li {
+ margin-bottom: 6px; }
+
+li {
+ line-height: inherit;
+ margin-bottom: 12px; }
+
+ul.large li,
+li p {
+ line-height: inherit; }
+
+.list-bordered {
+ list-style-type: none;
+ margin: 0 0 18px 0;
+ padding: 0; }
+ .list-bordered li {
+ margin-bottom: 6px;
+ padding-bottom: 6px;
+ border-bottom: 1px dashed #c7ced6; }
+ .list-bordered li:last-child {
+ margin-bottom: 0;
+ padding-bottom: 0;
+ border-bottom-width: 0; }
+
+/************************
+****** Links *******
+**** Version: 0.0.1 *****
+*************************/
+a {
+ color: #4d4d4d;
+ text-decoration: none;
+ outline: 0; }
+ a:visited {
+ color: #4d4d4d;
+ text-decoration: underline;
+ outline: 0; }
+ a:hover, a:active, a:focus {
+ color: #262626; }
+
+/************************
+****** Pager *******
+**** Version: 0.0.1 *****
+*************************/
+.pager {
+ padding: 0;
+ margin-bottom: 1.125em;
+ margin-left: 0;
+ text-align: center;
+ list-style: none; }
+ .pager {
+ *zoom: 1; }
+ .pager:before, .pager:after {
+ content: "";
+ display: table; }
+ .pager:after {
+ clear: both; }
+ .pager li {
+ display: inline; }
+ .pager a {
+ display: inline-block;
+ padding: 5px 14px;
+ background-color: #fff;
+ border: 1px solid #ddd;
+ -webkit-border-radius: 0.9375em;
+ -moz-border-radius: 0.9375em;
+ -ms-border-radius: 0.9375em;
+ -o-border-radius: 0.9375em;
+ border-radius: 0.9375em; }
+ .pager a:hover {
+ text-decoration: none;
+ background-color: #f5f5f5; }
+ .pager .next a {
+ float: right; }
+ .pager .previous a {
+ float: left; }
+ .pager .disabled a {
+ color: #999;
+ cursor: default;
+ background-color: #fff; }
+ .pager .disabled a:hover {
+ color: #999;
+ cursor: default;
+ background-color: #fff; }
+
+/************************
+******* Pagination ******
+**** Version: 0.0.1 *****
+*************************/
+/* Variables
+================================================== */
+.pagination {
+ height: 2.25em;
+ margin: 1.125em 0; }
+ .pagination ul {
+ display: inline-block;
+ padding: 0;
+ margin-bottom: 0;
+ margin-left: 0;
+ -webkit-border-radius: 0.1875em;
+ -moz-border-radius: 0.1875em;
+ -ms-border-radius: 0.1875em;
+ -o-border-radius: 0.1875em;
+ border-radius: 0.1875em;
+ -webkit-box-shadow: 0 1px 2px rgba(0, 0, 0, 0.05);
+ -moz-box-shadow: 0 1px 2px rgba(0, 0, 0, 0.05);
+ -ms-box-shadow: 0 1px 2px rgba(0, 0, 0, 0.05);
+ -o-box-shadow: 0 1px 2px rgba(0, 0, 0, 0.05);
+ box-shadow: 0 1px 2px rgba(0, 0, 0, 0.05); }
+ .pagination li {
+ display: inline; }
+ .pagination li:first-child a {
+ border-left-width: 1px;
+ -webkit-border-bottom-left-radius: 0.1875em;
+ -moz-border-bottom-left-radius: 0.1875em;
+ -ms-border-bottom-left-radius: 0.1875em;
+ -o-border-bottom-left-radius: 0.1875em;
+ border-bottom-left-radius: 0.1875em;
+ -webkit-border-top-left-radius: 0.1875em;
+ -moz-border-top-left-radius: 0.1875em;
+ -ms-border-top-left-radius: 0.1875em;
+ -o-border-top-left-radius: 0.1875em;
+ border-top-left-radius: 0.1875em;
+ background-clip: padding-box; }
+ .pagination li:last-child a {
+ -webkit-border-bottom-right-radius: 0.1875em;
+ -moz-border-bottom-right-radius: 0.1875em;
+ -ms-border-bottom-right-radius: 0.1875em;
+ -o-border-bottom-right-radius: 0.1875em;
+ border-bottom-right-radius: 0.1875em;
+ -webkit-border-top-right-radius: 0.1875em;
+ -moz-border-top-right-radius: 0.1875em;
+ -ms-border-top-right-radius: 0.1875em;
+ -o-border-top-right-radius: 0.1875em;
+ border-top-right-radius: 0.1875em;
+ background-clip: padding-box; }
+ .pagination a {
+ float: left;
+ padding: 0 .625em;
+ line-height: 1.75em;
+ text-decoration: none;
+ border: 1px solid #ddd;
+ border-left-width: 0; }
+ .pagination a:hover {
+ background-color: #f5f5f5; }
+ .pagination .active a {
+ background-color: #f5f5f5;
+ color: #999;
+ cursor: default; }
+ .pagination .disabled span {
+ color: #999;
+ cursor: default;
+ background-color: transparent; }
+ .pagination .disabled a {
+ color: #999;
+ cursor: default;
+ background-color: transparent; }
+ .pagination .disabled a:hover {
+ color: #999;
+ cursor: default;
+ background-color: transparent; }
+
+.pagination-centered {
+ text-align: center; }
+
+.pagination-right {
+ text-align: right; }
+
+/* Images
+--------------------------------------------------*/
+img {
+ max-width: 100%;
+ border-width: 0;
+ vertical-align: middle;
+ -ms-interpolation-mode: bicubic; }
+
+svg:not(:root) {
+ overflow: hidden; }
+
+/* -- FIGURES -- */
+figure {
+ margin-bottom: 36px; }
+ figure img {
+ margin-bottom: 12px; }
+ figure figcaption {
+ display: block;
+ font-weight: normal;
+ font-size: 0.875em;
+ color: #808080; }
+
+/* -- VIDEOS & OTHER MEDIA -- */
+video {
+ width: 100%; }
+
+iframe, embed, object {
+ max-width: 100%; }
+
+.vendor {
+ padding: 2%;
+ background: #d1eed1;
+ margin-bottom: 2em; }
+
+.unsupported {
+ background: #fddfde; }
+
+/************************
+******* Slideshow *******
+**** Version: 0.0.1 *****
+*************************/
+/* Slideshow
+================================================== */
+/*! Modified from http://responsiveslides.com v1.54 by @viljamis */
+/* Variables
+========================= */
+/* Build
+========================= */
+.rslides {
+ position: relative;
+ list-style: none;
+ overflow: hidden;
+ width: 100%;
+ padding: 0;
+ margin: 0; }
+ .rslides li {
+ -webkit-backface-visibility: hidden;
+ top: 0;
+ right: auto;
+ bottom: auto;
+ left: 0;
+ position: absolute;
+ display: none;
+ width: 100%; }
+ .rslides li:first-child {
+ position: relative;
+ display: block;
+ float: left; }
+ .rslides img {
+ display: block;
+ height: auto;
+ float: left;
+ width: 100%;
+ border: 0; }
+
+.rslides {
+ margin: 0 auto 2.5em; }
+
+/* Main SlideShow Themes
+------------------------------------- */
+.rslides_container {
+ margin-bottom: 3.125em;
+ position: relative;
+ float: left;
+ width: 100%; }
+
+.centered-btns_nav {
+ z-index: 3;
+ -webkit-tap-highlight-color: transparent;
+ top: 50%;
+ right: auto;
+ bottom: auto;
+ left: 0;
+ position: absolute;
+ text-indent: -9999px;
+ overflow: hidden;
+ text-decoration: none;
+ display: block;
+ font-size: 0;
+ text-align: start;
+ opacity: .7;
+ height: 3.8125em;
+ width: 2.375em;
+ background: transparent url("../img//themes/themes.gif") no-repeat left top;
+ margin-top: -2.8125em; }
+ .centered-btns_nav:active {
+ opacity: 1.0; }
+ .centered-btns_nav.next {
+ top: auto;
+ right: 0;
+ bottom: auto;
+ left: auto;
+ position: absolute;
+ left: auto;
+ background-position: right top;
+ right: 0; }
+
+.transparent-btns_nav {
+ z-index: 3;
+ top: 0;
+ right: auto;
+ bottom: auto;
+ left: 0;
+ position: absolute;
+ text-indent: -9999px;
+ overflow: hidden;
+ text-decoration: none;
+ display: block;
+ font-size: 0;
+ text-align: start;
+ -webkit-tap-highlight-color: transparent;
+ display: block;
+ background: #fff;
+ /* Fix for IE6-9 */
+ opacity: 0;
+ filter: alpha(opacity=1);
+ width: 48%;
+ height: 91%; }
+ .transparent-btns_nav.next {
+ top: auto;
+ right: 0;
+ bottom: auto;
+ left: auto;
+ position: absolute; }
+
+.large-btns_nav {
+ z-index: 3;
+ top: 0;
+ right: auto;
+ bottom: 0;
+ left: 0;
+ position: absolute;
+ text-indent: -9999px;
+ overflow: hidden;
+ text-decoration: none;
+ display: block;
+ font-size: 0;
+ text-align: start;
+ -webkit-tap-highlight-color: transparent;
+ opacity: 0.6;
+ background: black url("../img//themes/themes.gif") no-repeat left 50%;
+ width: 2.375em; }
+ .large-btns_nav:active {
+ opacity: 1.0; }
+ .large-btns_nav.next {
+ top: auto;
+ right: 0;
+ bottom: auto;
+ left: auto;
+ position: absolute;
+ background-position: right 50%; }
+
+.centered-btns_nav:focus,
+.transparent-btns_nav:focus,
+.large-btns_nav:focus {
+ outline: none; }
+
+.centered-btns_tabs,
+.transparent-btns_tabs,
+.large-btns_tabs {
+ margin-top: 0.625em;
+ text-align: center; }
+ .centered-btns_tabs li,
+ .transparent-btns_tabs li,
+ .large-btns_tabs li {
+ display: inline;
+ float: none;
+ _float: left;
+ *float: left;
+ margin-right: 0.3125em; }
+ .centered-btns_tabs a,
+ .transparent-btns_tabs a,
+ .large-btns_tabs a {
+ text-indent: -9999px;
+ overflow: hidden;
+ text-decoration: none;
+ display: block;
+ font-size: 0;
+ text-align: start;
+ -webkit-border-radius: 0.9375em;
+ -moz-border-radius: 0.9375em;
+ border-radius: 0.9375em;
+ background: #ccc;
+ background: rgba(0, 0, 0, 0.2);
+ display: inline-block;
+ _display: block;
+ *display: block;
+ -webkit-box-shadow: inset 0 0 2px 0 rgba(0, 0, 0, 0.3);
+ -moz-box-shadow: inset 0 0 2px 0 rgba(0, 0, 0, 0.3);
+ -ms-box-shadow: inset 0 0 2px 0 rgba(0, 0, 0, 0.3);
+ -o-box-shadow: inset 0 0 2px 0 rgba(0, 0, 0, 0.3);
+ box-shadow: inset 0 0 2px 0 rgba(0, 0, 0, 0.3);
+ width: 0.5625em;
+ height: 0.5625em; }
+
+.centered-btns_here a,
+.transparent-btns_here a,
+.large-btns_here a {
+ background: #222;
+ background: rgba(0, 0, 0, 0.8); }
+
+/* Other Theme Options
+---------------------------------- */
+#slider2,
+#slider3 {
+ -webkit-box-shadow: none;
+ -moz-box-shadow: none;
+ -ms-box-shadow: none;
+ -o-box-shadow: none;
+ box-shadow: none;
+ margin: 0 auto; }
+
+.rslides_tabs {
+ list-style: none;
+ padding: 0;
+ background: rgba(0, 0, 0, 0.25);
+ -webkit-box-shadow: 0 0 1px rgba(255, 255, 255, 0.3), inset 0 0 5px black;
+ -moz-box-shadow: 0 0 1px rgba(255, 255, 255, 0.3), inset 0 0 5px black;
+ -ms-box-shadow: 0 0 1px rgba(255, 255, 255, 0.3), inset 0 0 5px black;
+ -o-box-shadow: 0 0 1px rgba(255, 255, 255, 0.3), inset 0 0 5px black;
+ box-shadow: 0 0 1px rgba(255, 255, 255, 0.3), inset 0 0 5px black;
+ font-size: 1.125em;
+ list-style: none;
+ margin: 0 auto 3.125em;
+ max-width: 33.75em;
+ padding: 0.625em 0;
+ text-align: center;
+ width: 100%; }
+ .rslides_tabs li {
+ display: inline;
+ float: none;
+ margin-right: 0.0625em; }
+ .rslides_tabs li:first-child {
+ margin-left: 0; }
+ .rslides_tabs a {
+ width: auto;
+ line-height: 1.25em;
+ padding: 0.5625em 1.25em;
+ height: auto;
+ background: transparent;
+ display: inline; }
+ .rslides_tabs .rslides_here a {
+ background: rgba(255, 255, 255, 0.1);
+ color: #fff;
+ font-weight: bold; }
+
+a {
+ color: #fff;
+ text-decoration: none; }
+
+.footer {
+ font-size: 0.6875em; }
+
+/* Callback example */
+.events {
+ list-style: none; }
+
+.callbacks_container {
+ margin-bottom: 3.125em;
+ position: relative;
+ float: left;
+ width: 100%; }
+
+.callbacks {
+ position: relative;
+ list-style: none;
+ overflow: hidden;
+ width: 100%;
+ padding: 0;
+ margin: 0; }
+ .callbacks li {
+ position: absolute;
+ width: 100%;
+ left: 0;
+ top: 0; }
+ .callbacks img {
+ display: block;
+ position: relative;
+ z-index: 1;
+ height: auto;
+ width: 100%;
+ border: 0; }
+ .callbacks .caption {
+ display: block;
+ top: auto;
+ right: 0;
+ bottom: 0;
+ left: 0;
+ position: absolute;
+ z-index: 2;
+ font-size: 1.25em;
+ text-shadow: none;
+ color: #fff;
+ background: #000;
+ background: rgba(0, 0, 0, 0.8);
+ padding: 0.625em 1.25em;
+ margin: 0;
+ max-width: none; }
+
+.callbacks_nav {
+ top: 52%;
+ right: auto;
+ bottom: auto;
+ left: 0;
+ position: absolute;
+ text-indent: -9999px;
+ overflow: hidden;
+ text-decoration: none;
+ display: block;
+ font-size: 0;
+ text-align: start;
+ -webkit-tap-highlight-color: transparent;
+ opacity: 0.7;
+ z-index: 3;
+ height: 3.8125em;
+ width: 2.375em;
+ background: transparent url("../img//themes/themes.gif") no-repeat left top;
+ margin-top: -2.8125em; }
+ .callbacks_nav:active {
+ opacity: 1.0; }
+ .callbacks_nav.next {
+ top: auto;
+ right: 0;
+ bottom: auto;
+ left: auto;
+ position: absolute;
+ background-position: right top; }
+ @media (max-width: 37.5em) {
+ .callbacks_nav {
+ top: 47%;
+ top: 47%;
+ right: auto;
+ bottom: auto;
+ left: auto;
+ position: absolute; } }
+
+#slider3-pager a {
+ display: inline-block;
+ padding: 0; }
+#slider3-pager img {
+ float: left; }
+#slider3-pager .rslides_here a {
+ background: transparent;
+ box-shadow: 0 0 0 2px #666; }
+
+/*
+ * jQuery FlexSlider v2.2.0
+ * http://www.woothemes.com/flexslider/
+ *
+ * Copyright 2012 WooThemes
+ * Free to use under the GPLv2 license.
+ * http://www.gnu.org/licenses/gpl-2.0.html
+ *
+ * Contributing author: Tyler Smith (@mbmufffin)
+ */
+/* Browser Resets
+*********************************/
+.flex-container a:active,
+.flexslider a:active,
+.flex-container a:focus,
+.flexslider a:focus {
+ outline: none; }
+
+.slides,
+.flex-control-nav,
+.flex-direction-nav {
+ margin: 0;
+ padding: 0;
+ list-style: none; }
+
+/* Icon Fonts
+*********************************/
+/* Font-face Icons */
+@font-face {
+ font-family: 'flexslider-icon';
+ src: url("fonts/flexslider-icon.eot");
+ src: url("fonts/flexslider-icon.eot?#iefix") format("embedded-opentype"), url("fonts/flexslider-icon.woff") format("woff"), url("fonts/flexslider-icon.ttf") format("truetype"), url("fonts/flexslider-icon.svg#flexslider-icon") format("svg");
+ font-weight: normal;
+ font-style: normal; }
+/* FlexSlider Necessary Styles
+*********************************/
+.flexslider {
+ margin: 0;
+ padding: 0; }
+ .flexslider .slides > li {
+ display: none;
+ -webkit-backface-visibility: hidden; }
+ .flexslider .slides img {
+ width: 100%;
+ display: block; }
+
+.flex-pauseplay span {
+ text-transform: capitalize; }
+
+/* Clearfix for the .slides element */
+.slides:after {
+ content: "\0020";
+ display: block;
+ clear: both;
+ visibility: hidden;
+ line-height: 0;
+ height: 0; }
+
+html[xmlns] .slides {
+ display: block; }
+
+* html .slides {
+ height: 1%; }
+
+/* No JavaScript Fallback */
+/* If you are not using another script, such as Modernizr, make sure you
+ * include js that eliminates this class on page load */
+.no-js .slides > li:first-child {
+ display: block; }
+
+/* FlexSlider Default Theme
+*********************************/
+.flexslider {
+ margin: 0 0 60px;
+ background: #fff;
+ border: 4px solid #fff;
+ position: relative;
+ -webkit-border-radius: 4px;
+ -moz-border-radius: 4px;
+ -ms-border-radius: 4px;
+ -o-border-radius: 4px;
+ border-radius: 4px;
+ -webkit-box-shadow: 0 1px 4px rgba(0, 0, 0, 0.2);
+ -moz-box-shadow: 0 1px 4px rgba(0, 0, 0, 0.2);
+ -ms-box-shadow: 0 1px 4px rgba(0, 0, 0, 0.2);
+ -o-box-shadow: 0 1px 4px rgba(0, 0, 0, 0.2);
+ box-shadow: 0 1px 4px rgba(0, 0, 0, 0.2);
+ zoom: 1; }
+
+.flex-viewport {
+ max-height: 2000px;
+ -webkit-transition: all 1s ease;
+ -moz-transition: all 1s ease;
+ -ms-transition: all 1s ease;
+ -o-transition: all 1s ease;
+ transition: all 1s ease; }
+
+.loading .flex-viewport {
+ max-height: 300px; }
+
+.flexslider .slides {
+ zoom: 1; }
+
+.carousel li {
+ margin-right: 5px; }
+
+/* Direction Nav */
+.flex-direction-nav {
+ *height: 0; }
+ .flex-direction-nav a {
+ text-decoration: none;
+ display: block;
+ width: 40px;
+ height: 60px;
+ margin: -20px 0 0;
+ position: absolute;
+ top: 50%;
+ z-index: 10;
+ overflow: hidden;
+ opacity: 0;
+ cursor: pointer;
+ color: rgba(0, 0, 0, 0.8) !important;
+ text-shadow: 1px 1px 0 rgba(255, 255, 255, 0.3);
+ -webkit-transition: all 0.3s ease;
+ -moz-transition: all 0.3s ease;
+ -ms-transition: all 0.3s ease;
+ -o-transition: all 0.3s ease;
+ transition: all 0.3s ease; }
+ .flex-direction-nav a:before {
+ font-family: "icomoon";
+ font-size: 40px;
+ display: inline-block;
+ content: '\e736'; }
+ .flex-direction-nav a .flex-next:before {
+ content: '\e732'; }
+ .flex-direction-nav .flex-prev {
+ left: -50px; }
+ @media (max-width: 860px) {
+ .flex-direction-nav .flex-prev {
+ opacity: 1;
+ left: 10px; } }
+ .flex-direction-nav .flex-next {
+ right: -50px;
+ text-align: right; }
+ @media (max-width: 860px) {
+ .flex-direction-nav .flex-next {
+ opacity: 1;
+ right: 10px; } }
+ .flex-direction-nav .flex-disabled {
+ opacity: 0 !important;
+ filter: alpha(opacity=0);
+ cursor: default; }
+
+.flexslider:hover .flex-prev {
+ opacity: .7;
+ left: 10px; }
+.flexslider:hover .flex-next {
+ opacity: .7;
+ right: 10px; }
+
+/* Pause/Play */
+.flex-pauseplay a {
+ display: block;
+ width: 20px;
+ height: 20px;
+ position: absolute;
+ bottom: 5px;
+ left: 10px;
+ opacity: .8;
+ z-index: 10;
+ overflow: hidden;
+ cursor: pointer;
+ color: #000; }
+ .flex-pauseplay a:before {
+ font-family: "icomoon";
+ font-size: 20px;
+ display: inline-block;
+ content: '\e706'; }
+ .flex-pauseplay a:hover {
+ opacity: 1; }
+ .flex-pauseplay a.flex-play:before {
+ content: '\e732'; }
+
+/* Control Nav */
+.flex-control-nav {
+ width: 100%;
+ position: absolute;
+ bottom: -40px;
+ text-align: center; }
+ .flex-control-nav li {
+ margin: 0 6px;
+ display: inline-block;
+ zoom: 1;
+ *display: inline; }
+
+.flex-control-paging li a {
+ width: 11px;
+ height: 11px;
+ display: block;
+ background: #666;
+ background: rgba(0, 0, 0, 0.5);
+ cursor: pointer;
+ text-indent: -9999px;
+ -webkit-border-radius: 20px;
+ -moz-border-radius: 20px;
+ -ms-border-radius: 20px;
+ -o-border-radius: 20px;
+ border-radius: 20px;
+ -webkit-box-shadow: inset 0 0 3px rgba(0, 0, 0, 0.3);
+ -moz-box-shadow: inset 0 0 3px rgba(0, 0, 0, 0.3);
+ -ms-box-shadow: inset 0 0 3px rgba(0, 0, 0, 0.3);
+ -o-box-shadow: inset 0 0 3px rgba(0, 0, 0, 0.3);
+ box-shadow: inset 0 0 3px rgba(0, 0, 0, 0.3); }
+ .flex-control-paging li a:hover {
+ background: #333;
+ background: rgba(0, 0, 0, 0.7); }
+ .flex-control-paging li a.flex-active {
+ background: #000;
+ background: rgba(0, 0, 0, 0.9);
+ cursor: default; }
+
+.flex-control-thumbs {
+ margin: 5px 0 0;
+ position: static;
+ overflow: hidden; }
+ .flex-control-thumbs li {
+ width: 25%;
+ float: left;
+ margin: 0; }
+ .flex-control-thumbs img {
+ width: 100%;
+ display: block;
+ opacity: .7;
+ cursor: pointer; }
+ .flex-control-thumbs img:hover {
+ opacity: 1; }
+ .flex-control-thumbs .flex-active {
+ opacity: 1;
+ cursor: default; }
+
+/************************
+****** HR *******
+**** Version: 0.0.1 *****
+*************************/
+/* Horizontal Rules
+--------------------------------------------------*/
+hr {
+ border: solid #ddd;
+ border-width: 1px 0 0;
+ clear: both;
+ margin: .625em 0 1.875em;
+ height: 0; }
+
+/************************
+****** Forms *******
+**** Version: 0.0.1 *****
+*************************/
+form {
+ margin: 0 0 1.25em; }
+
+fieldset {
+ padding: 0;
+ margin: 0;
+ border: 0; }
+
+legend {
+ display: block;
+ width: 100%;
+ padding: 0;
+ margin-bottom: 1.25em;
+ font-size: 1.3125em;
+ line-height: 2.5;
+ color: #4d4d4d;
+ border: 0;
+ border-bottom: 1px solid #e5e5e5; }
+ legend small {
+ font-size: 0.875em;
+ color: #999; }
+
+label, input, button, select, textarea {
+ font-size: 0.875em;
+ font-weight: normal;
+ line-height: 1.25;
+ font-family: "Helvetica Neue",Helvetica,Arial,sans-serif; }
+
+label {
+ display: block;
+ margin-bottom: .3125em; }
+
+select,
+textarea {
+ display: inline-block;
+ height: auto;
+ padding: .5em .375em;
+ margin-bottom: .5625em;
+ font-size: 0.875em;
+ line-height: 1.25;
+ color: gray;
+ -webkit-border-radius: .1875em;
+ -moz-border-radius: .1875em;
+ border-radius: .1875em; }
+
+input[type="text"], input[type="password"], input[type="datetime"], input[type="datetime-local"], input[type="date"], input[type="month"], input[type="time"], input[type="week"], input[type="number"], input[type="email"], input[type="url"], input[type="search"], input[type="tel"], input[type="color"] {
+ display: inline-block;
+ height: auto;
+ padding: .5em .375em;
+ margin-bottom: .5625em;
+ font-size: 0.875em;
+ line-height: 1.25;
+ color: gray;
+ -webkit-border-radius: .1875em;
+ -moz-border-radius: .1875em;
+ border-radius: .1875em; }
+
+.uneditable-input {
+ display: inline-block;
+ height: auto;
+ padding: .5em .375em;
+ margin-bottom: .5625em;
+ font-size: 0.875em;
+ line-height: 1.25em;
+ color: gray;
+ -webkit-border-radius: .1875em;
+ -moz-border-radius: .1875em;
+ border-radius: .1875em; }
+
+input, textarea,
+.uneditable-input {
+ width: auto; }
+
+textarea {
+ width: 100%;
+ height: auto;
+ background-color: #fff;
+ border: 1px solid #ccc;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);
+ -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);
+ -webkit-transition: border linear .2s, box-shadow linear .2s;
+ -moz-transition: border linear .2s, box-shadow linear 0.2s;
+ -o-transition: border linear .2s, box-shadow linear .2s;
+ transition: border linear .2s, box-shadow linear .2s; }
+ textarea:focus {
+ border-color: rgba(82, 168, 236, 0.8);
+ outline: 0;
+ outline: thin dotted \9;
+ /* IE6-9 */
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 8px rgba(82, 168, 236, 0.6);
+ -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 8px rgba(82, 168, 236, 0.6);
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 8px rgba(82, 168, 236, 0.6); }
+
+input[type="text"], input[type="password"], input[type="datetime"], input[type="datetime-local"], input[type="date"], input[type="month"], input[type="time"], input[type="week"], input[type="number"], input[type="email"], input[type="url"], input[type="search"], input[type="tel"], input[type="color"] {
+ background-color: #fff;
+ border: 1px solid #ccc;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);
+ -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);
+ -webkit-transition: border linear .2s, box-shadow linear .2s;
+ -moz-transition: border linear .2s, box-shadow linear .2s;
+ -o-transition: border linear .2s, box-shadow linear .2s;
+ transition: border linear .2s, box-shadow linear .2s; }
+ input[type="text"]:focus, input[type="password"]:focus, input[type="datetime"]:focus, input[type="datetime-local"]:focus, input[type="date"]:focus, input[type="month"]:focus, input[type="time"]:focus, input[type="week"]:focus, input[type="number"]:focus, input[type="email"]:focus, input[type="url"]:focus, input[type="search"]:focus, input[type="tel"]:focus, input[type="color"]:focus {
+ border-color: rgba(82, 168, 236, 0.8);
+ outline: 0;
+ outline: thin dotted \9;
+ /* IE6-9 */
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 8px rgba(82, 168, 236, 0.6);
+ -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 8px rgba(82, 168, 236, 0.6);
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 8px rgba(82, 168, 236, 0.6); }
+input[type="radio"], input[type="checkbox"] {
+ margin: .25em 0 0;
+ margin-top: 1px \9;
+ *margin-top: 0;
+ line-height: normal;
+ cursor: pointer; }
+input[type="file"], input[type="image"], input[type="submit"], input[type="reset"], input[type="button"], input[type="radio"], input[type="checkbox"] {
+ width: auto; }
+input[type="file"]:focus, input[type="radio"]:focus, input[type="checkbox"]:focus {
+ outline: thin dotted #4d4d4d;
+ outline: 5px auto -webkit-focus-ring-color;
+ outline-offset: -2px; }
+
+.uneditable-input {
+ background-color: #fff;
+ border: 1px solid #ccc;
+ -webkit-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.075);
+ -moz-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.075);
+ -ms-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.075);
+ -o-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.075);
+ box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.075);
+ -webkit-transition: border linear .2s,box-shadow linear .2s;
+ -moz-transition: border linear .2s,box-shadow linear .2s;
+ -o-transition: border linear .2s,box-shadow linear .2s;
+ transition: border linear .2s,box-shadow linear .2s; }
+ .uneditable-input:focus {
+ border-color: rgba(82, 168, 236, 0.8);
+ outline: 0;
+ outline: thin dotted \9;
+ /* IE6-9 */
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 8px rgba(82, 168, 236, 0.6);
+ -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 8px rgba(82, 168, 236, 0.6);
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 8px rgba(82, 168, 236, 0.6); }
+
+select,
+input[type="file"] {
+ height: 1.875em;
+ /* In IE7,the height of the select element cannot be changed by height,only font-size */
+ *margin-top: .25em;
+ /* For IE7,add top margin to align select with labels */
+ line-height: 1.875em; }
+
+select {
+ width: 13.75em;
+ background-color: #fff;
+ border: 1px solid #ccc; }
+ select[multiple], select[size] {
+ height: auto; }
+ select:focus {
+ outline: thin dotted #4d4d4d;
+ outline: 5px auto -webkit-focus-ring-color;
+ outline-offset: -2px; }
+
+.uneditable-input,
+.uneditable-textarea {
+ color: #999;
+ cursor: not-allowed;
+ background-color: #fcfcfc;
+ border-color: #ccc;
+ -webkit-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.025);
+ -moz-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.025);
+ -ms-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.025);
+ -o-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.025);
+ box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.025); }
+
+.uneditable-input {
+ overflow: hidden;
+ white-space: nowrap; }
+
+.uneditable-textarea {
+ width: auto;
+ height: auto; }
+
+input:-moz-placeholder,
+textarea:-moz-placeholder,
+input:-ms-input-placeholder,
+textarea:-ms-input-placeholder,
+input::-webkit-input-placeholder,
+textarea::-webkit-input-placeholder {
+ color: #999; }
+
+.radio,
+.checkbox {
+ min-height: 1.125em;
+ padding-left: 1.125em; }
+ .radio.inline,
+ .checkbox.inline {
+ display: inline-block;
+ padding-top: .3125em;
+ margin-bottom: 0;
+ vertical-align: middle; }
+
+.radio input[type="radio"],
+.checkbox input[type="checkbox"] {
+ float: left;
+ margin-left: -1.125em; }
+
+.controls > .radio:first-child, .controls > .checkbox:first-child {
+ padding-top: .3125em; }
+
+.radio.inline + .radio.inline, .checkbox.inline + .checkbox.inline {
+ margin-left: .625em; }
+
+.input-mini,
+.input-small,
+.input-medium,
+.input-large,
+.input-xlarge,
+.input-xxlarge {
+ width: 100%; }
+
+input[class*="span"],
+select[class*="span"],
+textarea[class*="span"],
+.uneditable-input[class*="span"] {
+ float: none;
+ margin-left: 0; }
+
+.row-fluid input[class*="span"],
+.row-fluid select[class*="span"],
+.row-fluid textarea[class*="span"],
+.row-fluid .uneditable-input[class*="span"] {
+ float: none;
+ margin-left: 0;
+ display: inline-block; }
+
+.input-append input[class*="span"],
+.input-append .uneditable-input[class*="span"],
+.input-prepend input[class*="span"],
+.input-prepend .uneditable-input[class*="span"] {
+ display: inline-block; }
+
+input,
+textarea,
+.uneditable-input {
+ margin-left: 0; }
+
+.controls-row [class*="span"] + [class*="span"] {
+ margin-left: 1.25em; }
+.controls-row {
+ *zoom: 1; }
+.controls-row:before, .controls-row:after {
+ content: "";
+ display: table; }
+.controls-row:after {
+ clear: both; }
+.controls-row [class*="span"] {
+ float: left; }
+
+input[disabled], input[readonly],
+select[disabled],
+select[readonly],
+textarea[disabled],
+textarea[readonly],
+input[disabled],
+input[readonly],
+select[disabled],
+select[readonly],
+textarea[disabled],
+textarea[readonly] {
+ cursor: not-allowed;
+ background-color: #eee; }
+
+input[type="radio"][disabled], input[type="radio"][readonly], input[type="checkbox"][disabled], input[type="checkbox"][readonly] {
+ background-color: transparent; }
+
+.control-group.warning > label,
+.control-group.warning .help-block,
+.control-group.warning .help-inline,
+.control-group.warning .checkbox,
+.control-group.warning .radio,
+.control-group.warning input,
+.control-group.warning select,
+.control-group.warning textarea {
+ color: #c09853; }
+.control-group.warning input,
+.control-group.warning select,
+.control-group.warning textarea {
+ border-color: #c09853;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);
+ -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); }
+ .control-group.warning input:focus,
+ .control-group.warning select:focus,
+ .control-group.warning textarea:focus {
+ border-color: #a47e3c;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #dbc59e;
+ -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #dbc59e;
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #dbc59e; }
+.control-group.warning .input-prepend .add-on,
+.control-group.warning .input-append .add-on {
+ color: #c09853;
+ background-color: #fcf8e3;
+ border-color: #c09853; }
+.control-group.error > label,
+.control-group.error .help-block,
+.control-group.error .help-inline,
+.control-group.error .checkbox,
+.control-group.error .radio,
+.control-group.error input,
+.control-group.error select,
+.control-group.error textarea {
+ color: #b94a48; }
+.control-group.error input,
+.control-group.error select,
+.control-group.error textarea {
+ border-color: #b94a48;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);
+ -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); }
+ .control-group.error input:focus,
+ .control-group.error select:focus,
+ .control-group.error textarea:focus {
+ border-color: #953b39;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #d59392;
+ -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #d59392;
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #d59392; }
+.control-group.error .input-prepend .add-on, .control-group.error .input-append .add-on {
+ color: #b94a48;
+ background-color: #f2dede;
+ border-color: #b94a48; }
+.control-group.success > label,
+.control-group.success .help-block,
+.control-group.success .help-inline,
+.control-group.success .checkbox,
+.control-group.success .radio,
+.control-group.success input,
+.control-group.success select,
+.control-group.success textarea {
+ color: #468847; }
+.control-group.success input,
+.control-group.success select,
+.control-group.success textarea {
+ border-color: #468847;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);
+ -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); }
+ .control-group.success input:focus,
+ .control-group.success select:focus,
+ .control-group.success textarea:focus {
+ border-color: #356635;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #7aba7b;
+ -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #7aba7b;
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #7aba7b; }
+.control-group.success .input-prepend .add-on,
+.control-group.success .input-append .add-on {
+ color: #468847;
+ background-color: #dff0d8;
+ border-color: #468847; }
+.control-group.info > label,
+.control-group.info .help-block,
+.control-group.info .help-inline,
+.control-group.info .checkbox,
+.control-group.info .radio,
+.control-group.info input,
+.control-group.info select,
+.control-group.info textarea {
+ color: #3a87ad; }
+.control-group.info input,
+.control-group.info select,
+.control-group.info textarea {
+ border-color: #3a87ad;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);
+ -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075); }
+ .control-group.info input:focus,
+ .control-group.info select:focus,
+ .control-group.info textarea:focus {
+ border-color: #2d6987;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #7ab5d3;
+ -moz-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #7ab5d3;
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #7ab5d3; }
+.control-group.info .input-prepend .add-on, .control-group.info .input-append .add-on {
+ color: #3a87ad;
+ background-color: #d9edf7;
+ border-color: #3a87ad; }
+
+input:focus:required:invalid,
+textarea:focus:required:invalid,
+select:focus:required:invalid {
+ color: #b94a48;
+ border-color: #ee5f5b; }
+ input:focus:required:invalid:focus,
+ textarea:focus:required:invalid:focus,
+ select:focus:required:invalid:focus {
+ border-color: #e9322d;
+ -webkit-box-shadow: 0 0 6px #f8b9b7;
+ -moz-box-shadow: 0 0 6px #f8b9b7;
+ box-shadow: 0 0 6px #f8b9b7; }
+
+.form-actions {
+ padding: 1.1875em 1.25em 1.25em;
+ margin: 1.125em 0;
+ background-color: #f5f5f5;
+ border-top: 1px solid #e5e5e5;
+ *zoom: 1; }
+ .form-actions:before {
+ display: table;
+ line-height: 0;
+ content: ""; }
+ .form-actions:after {
+ display: table;
+ line-height: 0;
+ content: "";
+ clear: both; }
+
+.help-block,
+.help-inline {
+ color: #595959; }
+
+.help-block {
+ display: block;
+ margin-bottom: .625em; }
+
+.help-inline {
+ display: inline-block;
+ *display: inline;
+ padding-left: .3125em;
+ vertical-align: middle;
+ *zoom: 1; }
+
+.input-append,
+.input-prepend {
+ margin-bottom: .3125em;
+ font-size: 0;
+ white-space: nowrap; }
+
+.input-append input,
+.input-append select,
+.input-append .uneditable-input,
+.input-prepend input,
+.input-prepend select,
+.input-prepend .uneditable-input {
+ position: relative;
+ margin-bottom: 0;
+ *margin-left: 0;
+ font-size: 0.875em;
+ vertical-align: top;
+ -webkit-border-radius: 0 3px 3px 0;
+ -moz-border-radius: 0 3px 3px 0;
+ border-radius: 0 3px 3px 0; }
+ .input-append input:focus,
+ .input-append select:focus,
+ .input-append .uneditable-input:focus,
+ .input-prepend input:focus,
+ .input-prepend select:focus,
+ .input-prepend .uneditable-input:focus {
+ z-index: 2; }
+.input-append.add-on,
+.input-prepend.add-on {
+ display: inline-block;
+ width: auto;
+ height: auto;
+ min-width: 1em;
+ padding: .5em .3125em;
+ font-size: 0.875em;
+ font-weight: normal;
+ line-height: 1.25em;
+ text-align: center;
+ text-shadow: 0 1px 0 #fff;
+ background-color: #eee;
+ border: 1px solid #ccc; }
+.input-append.add-on, .input-append.btn,
+.input-prepend.add-on,
+.input-prepend.btn {
+ vertical-align: middle;
+ -webkit-border-radius: 0;
+ -moz-border-radius: 0;
+ border-radius: 0; }
+.input-append .active,
+.input-prepend .active {
+ background-color: #a9dba9;
+ border-color: #46a546; }
+
+.input-prepend .active {
+ background-color: #a9dba9;
+ border-color: #46a546; }
+.input-prepend .add-on,
+.input-prepend .btn {
+ margin-right: -.0625em; }
+ .input-prepend .add-on:first-child,
+ .input-prepend .btn:first-child {
+ -webkit-border-radius: 3px 0 0 3px;
+ -moz-border-radius: 3px 0 0 3px;
+ border-radius: 3px 0 0 3px; }
+
+.input-append input,
+.input-append select,
+.input-append .uneditable-input {
+ -webkit-border-radius: 3px 0 0 3px;
+ -moz-border-radius: 3px 0 0 3px;
+ border-radius: 3px 0 0 3px; }
+.input-append .add-on,
+.input-append .btn {
+ margin-left: -.0625em; }
+ .input-append .add-on:last-child,
+ .input-append .btn:last-child {
+ -webkit-border-radius: 0 3px 3px 0;
+ -moz-border-radius: 0 3px 3px 0;
+ border-radius: 0 3px 3px 0; }
+
+.input-prepend.input-append input,
+.input-prepend.input-append select,
+.input-prepend.input-append .uneditable-input {
+ -webkit-border-radius: 0;
+ -moz-border-radius: 0;
+ border-radius: 0; }
+.input-prepend.input-append .add-on:first-child, .input-prepend.input-append .btn:first-child {
+ margin-right: -1px;
+ -webkit-border-radius: 3px 0 0 3px;
+ -moz-border-radius: 3px 0 0 3px;
+ border-radius: 3px 0 0 3px; }
+.input-prepend.input-append .add-on:last-child, .input-prepend.input-append .btn:last-child {
+ margin-left: -.0625em;
+ -webkit-border-radius: 0 3px 3px 0;
+ -moz-border-radius: 0 3px 3px 0;
+ border-radius: 0 3px 3px 0; }
+
+input.search-query {
+ padding-right: .875em;
+ padding-right: .25em \9;
+ padding-left: .875em;
+ padding-left: .25em \9;
+ /* IE7-8 doesn't have border-radius,so don't indent the padding */
+ margin-bottom: 0;
+ -webkit-border-radius: 1em;
+ -moz-border-radius: 1em;
+ border-radius: 1em; }
+
+/* Allow for input prepend/append in search forms */
+.form-search .input-append .search-query, .form-search .input-prepend .search-query {
+ -webkit-border-radius: 0;
+ -moz-border-radius: 0;
+ border-radius: 0; }
+.form-search .input-append .search-query {
+ -webkit-border-radius: .875em 0 0 .875em;
+ -moz-border-radius: .875em 0 0 .875em;
+ border-radius: .875em 0 0 .875em; }
+.form-search .input-append .btn {
+ -webkit-border-radius: 0 .875em .875em 0;
+ -moz-border-radius: 0 .875em .875em 0;
+ border-radius: 0 .875em .875em 0; }
+.form-search .input-prepend .search-query {
+ -webkit-border-radius: 0 .875em .875em 0;
+ -moz-border-radius: 0 .875em .875em 0;
+ border-radius: 0 .875em .875em 0; }
+.form-search .input-prepend .btn {
+ -webkit-border-radius: .875em 0 0 .875em;
+ -moz-border-radius: .875em 0 0 .875em;
+ border-radius: .875em 0 0 .875em;
+ height: auto; }
+.form-search input {
+ display: inline-block;
+ *display: inline;
+ margin-bottom: 0;
+ vertical-align: top;
+ *zoom: 1; }
+
+.form-inline input,
+.form-horizontal input,
+.form-search textarea,
+.form-inline textarea,
+.form-horizontal textarea,
+.form-search select,
+.form-inline select,
+.form-horizontal select,
+.form-search .help-inline,
+.form-inline .help-inline,
+.form-horizontal .help-inline,
+.form-search .uneditable-input,
+.form-inline .uneditable-input,
+.form-horizontal .uneditable-input,
+.form-search .input-prepend,
+.form-inline .input-prepend,
+.form-horizontal .input-prepend,
+.form-search .input-append,
+.form-inline .input-append,
+.form-horizontal .input-append {
+ display: inline-block;
+ *display: inline;
+ margin-bottom: 0;
+ vertical-align: top;
+ *zoom: 1; }
+
+.form-search .hide,
+.form-inline .hide,
+.form-horizontal .hide {
+ display: none; }
+
+.form-search label,
+.form-inline label,
+.form-search .btn-group,
+.form-inline .btn-group {
+ display: inline-block; }
+
+.form-search .input-append,
+.form-inline .input-append,
+.form-search .input-prepend,
+.form-inline .input-prepend {
+ margin-bottom: 0; }
+
+.form-search .radio, .form-search .checkbox {
+ padding-left: 0;
+ margin-bottom: 0;
+ vertical-align: middle; }
+
+.form-inline .radio, .form-inline .checkbox {
+ padding-left: 0;
+ margin-bottom: 0;
+ vertical-align: middle; }
+
+.form-search .radio input[type="radio"],
+.form-search .checkbox input[type="checkbox"] {
+ float: left;
+ margin-right: .1875em;
+ margin-left: 0; }
+
+.form-inline .radio input[type="radio"],
+.form-inline .checkbox input[type="checkbox"] {
+ float: left;
+ margin-right: .1875em;
+ margin-left: 0; }
+
+.control-group {
+ margin-bottom: .625em; }
+
+legend + .control-group {
+ margin-top: 1.25em;
+ -webkit-margin-top-collapse: separate; }
+
+.form-horizontal {
+ width: 90%; }
+ .form-horizontal .control-group {
+ margin-bottom: 1.25em; }
+ .form-horizontal .control-group {
+ *zoom: 1; }
+ .form-horizontal .control-group:before, .form-horizontal .control-group:after {
+ content: "";
+ display: table; }
+ .form-horizontal .control-group:after {
+ clear: both; }
+ .form-horizontal .control-label {
+ float: left;
+ width: auto;
+ padding-top: .7125em;
+ text-align: left;
+ margin-right: 4%; }
+ .form-horizontal .controls {
+ *display: inline-block;
+ *padding-left: 1.25em;
+ *margin-left: 0; }
+ .form-horizontal .controls:first-child {
+ *padding-left: 11.25em; }
+ .form-horizontal .help-block {
+ margin-bottom: 0; }
+ .form-horizontal input + .help-block,
+ .form-horizontal select + .help-block,
+ .form-horizontal textarea + .help-block {
+ margin-top: .625em; }
+ .form-horizontal .form-actions {
+ padding-left: 11.25em; }
+
+table {
+ width: 100%;
+ max-width: 100%;
+ margin-bottom: 1.5em;
+ border-collapse: collapse;
+ border-spacing: 0;
+ background-color: transparent; }
+ table th,
+ table td {
+ padding: .5em;
+ vertical-align: top;
+ border-top: 1px solid #8c9bab;
+ font-size: 0.875em;
+ line-height: 1.5;
+ text-align: left; }
+ table th {
+ font-weight: bold; }
+ table thead th {
+ background-color:#DBEEFF;
+ vertical-align: bottom; }
+ table thead td {
+ background-color:#DBEEFF;
+ }
+ table thead {
+ background-color:#DBEEFF;
+ }
+ table colgroup + thead tr:first-child th,
+ table colgroup + thead tr:first-child td {
+ border-top: 0; }
+ table thead:first-child tr:first-child th,
+ table thead:first-child tr:first-child td {
+ border-top: 0; }
+ table tbody + tbody {
+ border-top: 2px solid #8c9bab; }
+
+.table-condensed th,
+.table-condensed td {
+ padding: .25em .3125em; }
+
+.table-bordered {
+ border: 1px solid #8c9bab;
+ border-left: 0;
+ border-collapse: separate;
+ *border-collapse: collapsed; }
+ .table-bordered th,
+ .table-bordered td {
+ border-left: 1px solid #8c9bab; }
+ .table-bordered thead:first-child tr:first-child th {
+ border-top: 0; }
+ .table-bordered tbody:first-child tr:first-child th,
+ .table-bordered tbody:first-child tr:first-child td {
+ border-top: 0; }
+
+.table-striped tbody tr:nth-child(odd) td,
+.table-striped tbody tr:nth-child(odd) th {
+ background-color: #c7ced6; }
+
+/************************
+***** Tabs ******
+**** Version: 0.0.1 *****
+*************************/
+ul.tabs {
+ display: block;
+ margin: 0 0 1.25em;
+ padding: 0;
+ border-bottom: solid 1px #ddd;
+ zoom: 1; }
+ ul.tabs:before, ul.tabs:after {
+ content: "\0020";
+ display: block;
+ height: 0;
+ overflow: hidden; }
+ ul.tabs:after {
+ clear: both; }
+ ul.tabs li {
+ display: block;
+ width: auto;
+ height: auto;
+ padding: 0;
+ float: left;
+ margin-bottom: 0; }
+ ul.tabs li a {
+ display: block;
+ text-decoration: none;
+ width: auto;
+ height: 1.8125em;
+ padding: 0 1.25em;
+ line-height: 1.815em;
+ border: solid 1px #ddd;
+ border-width: 1px 1px 0 0;
+ margin: 0;
+ background: #f5f5f5;
+ font-size: 0.875em; }
+ ul.tabs li a.active {
+ background: #fff;
+ height: 1.8125em;
+ position: relative;
+ border-left-width: 1px;
+ margin: 0 0 0 -1px;
+ color: #111;
+ -webkit-border-top-right-radius: 0.125em;
+ -moz-border-top-right-radius: 0.125em;
+ -ms-border-top-right-radius: 0.125em;
+ -o-border-top-right-radius: 0.125em;
+ border-top-right-radius: 0.125em;
+ -webkit-border-top-left-radius: 0.125em;
+ -moz-border-top-left-radius: 0.125em;
+ -ms-border-top-left-radius: 0.125em;
+ -o-border-top-left-radius: 0.125em;
+ border-top-left-radius: 0.125em;
+ background-clip: padding-box; }
+ ul.tabs li:first-child a {
+ border-width: 1px 1px 0;
+ -moz-border-radius-topleft: 0.125em;
+ -webkit-border-top-left-radius: 0.125em;
+ border-top-left-radius: 0.125em; }
+ ul.tabs li:first-child a.active {
+ margin-left: 0; }
+ ul.tabs li:last-child a {
+ -moz-border-radius-topright: 0.125em;
+ -webkit-border-top-right-radius: 0.125em;
+ border-top-right-radius: 0.125em; }
+ul.tabs-content {
+ margin: 0;
+ display: block; }
+ ul.tabs-content > li {
+ display: none; }
+ ul.tabs-content > li.active {
+ display: block; }
+
+/* Theme - Theme styles for each area of the site.
+========================================================================== */
+/************************
+****** Header *******
+**** Version: 0.0.1 *****
+*************************/
+/* A collection of styles containing the header information */
+/************************
+****** Menus *******
+**** Version: 0.0.1 *****
+*************************/
+/*! responsive-nav.js 1.0.23 by @viljamis */
+.nav-collapse {
+ list-style: none;
+ width: 100%;
+ float: left; }
+ .nav-collapse ul {
+ margin: 0;
+ padding: 0;
+ width: 100%;
+ display: block;
+ list-style: none;
+ float: left; }
+ .nav-collapse li {
+ width: 100%;
+ display: block;
+ float: left; }
+ @media (min-width: 40em) {
+ .nav-collapse li {
+ width: 25%;
+ *width: 24.9%;
+ /* IE7 Hack */
+ _width: 19%;
+ /* IE6 Hack */ } }
+ .nav-collapse.opened {
+ max-height: 9999px; }
+ .nav-collapse a {
+ color: #fff;
+ text-decoration: none;
+ width: 100%;
+ background: #ff681f;
+ border-bottom: 1px solid #fff;
+ padding: .7em 1em;
+ float: left; }
+ @media (min-width: 40em) {
+ .nav-collapse a {
+ margin: 0;
+ padding: 1em;
+ float: left;
+ text-align: center;
+ border-bottom: 0;
+ border-right: 1px solid #fff; } }
+ .nav-collapse ul ul a {
+ background: #f00;
+ padding-left: 2em; }
+ @media (min-width: 40em) {
+ .nav-collapse ul ul a {
+ display: none; } }
+
+.js .nav-collapse {
+ clip: rect(0 0 0 0);
+ max-height: 0;
+ position: absolute;
+ display: block;
+ overflow: hidden;
+ zoom: 1; }
+ @media (min-width: 40em) {
+ .js .nav-collapse {
+ position: relative; }
+ .js .nav-collapse.closed {
+ max-height: none; } }
+
+.disable-pointer-events {
+ pointer-events: none !important; }
+
+.nav-toggle {
+ position: fixed;
+ -webkit-font-smoothing: antialiased;
+ -moz-osx-font-smoothing: grayscale;
+ -webkit-tap-highlight-color: transparent;
+ -webkit-touch-callout: none;
+ -webkit-user-select: none;
+ -moz-user-select: none;
+ -ms-user-select: none;
+ -o-user-select: none;
+ user-select: none;
+ text-decoration: none;
+ text-indent: -999px;
+ position: relative;
+ overflow: hidden;
+ width: 70px;
+ height: 55px;
+ float: right; }
+ .nav-toggle:before {
+ color: #444;
+ font-family: "icomoon";
+ font-style: normal;
+ font-weight: normal;
+ font-variant: normal;
+ font-size: 28px;
+ text-transform: none;
+ position: absolute;
+ content: "\e6b8";
+ text-indent: 0;
+ text-align: center;
+ line-height: 65px;
+ speak: none;
+ width: 100%;
+ top: 0;
+ left: 0; }
+ .nav-toggle .active:before {
+ font-size: 24px;
+ content: "\e6fd"; }
+ @media (min-width: 40em) {
+ .nav-toggle {
+ display: none; } }
+
+/************************
+****** Main *******
+**** Version: 0.0.1 *****
+*************************/
+section div {
+ padding: 18px 0; }
+
+.hero {
+ height: 15em;
+ background-color: #666666; }
+
+/************************
+****** Footer *******
+**** Version: 0.0.1 *****
+*************************/
+/* A collection of styles containing the footer information */
+
+/*# sourceMappingURL=wirefy.css.map */
diff --git a/ols-ui/ontologyWidget/relationalTree/index.html b/ols-ui/ontologyWidget/relationalTree/index.html
new file mode 100644
index 00000000..48c80a65
--- /dev/null
+++ b/ols-ui/ontologyWidget/relationalTree/index.html
@@ -0,0 +1,14 @@
+<!DOCTYPE html>
+
+<html>
+<head>
+ <link rel="stylesheet" href="css/ontology.css">
+ <script type="text/javascript" src="script/d3.js"></script>
+ <meta http-equiv="content-type" content="text/html; charset=UTF8">
+ <script src="script/jquery.min.1.11.2.js" ></script>
+ <script src="script/relationalTree.js" ></script>
+</head>
+<body>
+<div id="myid" class="term-relational-tree" data-label="insomnia" data-ontology-name="EFO" data-json-path="http://localhost:8983/solr/ontology/select?q=label%3ALABEL_TO_REPLACE+AND+ontology_name%3AONTOLOGY_NAME_TO_REPLACE&rows=1&wt=json&indent=true"></div>
+</body>
+</html>
\ No newline at end of file
diff --git a/ols-ui/ontologyWidget/relationalTree/indexCollapsible.html b/ols-ui/ontologyWidget/relationalTree/indexCollapsible.html
new file mode 100644
index 00000000..c1c82e57
--- /dev/null
+++ b/ols-ui/ontologyWidget/relationalTree/indexCollapsible.html
@@ -0,0 +1,19 @@
+<!DOCTYPE html>
+
+<html>
+<head>
+ <link rel="stylesheet" href="css/ontology.css">
+ <script type="text/javascript" src="script/CollapsibleLists.js"></script>
+ <script type="text/javascript" src="script/d3.js"></script>
+ <meta http-equiv="content-type" content="text/html; charset=UTF8">
+ <script src="script/jquery.min.1.11.2.js" ></script>
+ <script src="script/relationalTreeColapsible.js" ></script>
+
+
+</head>
+<body>
+<div id="myid" class="term-relational-tree" data-label="insomnia" data-ontology-name="EFO" data-json-path="http://localhost:8983/solr/ontology/select?q=label%3ALABEL_TO_REPLACE+AND+ontology_name%3AONTOLOGY_NAME_TO_REPLACE&rows=1&wt=json&indent=true"></div>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/ols-ui/ontologyWidget/relationalTree/indexIndented.html b/ols-ui/ontologyWidget/relationalTree/indexIndented.html
new file mode 100644
index 00000000..859226d4
--- /dev/null
+++ b/ols-ui/ontologyWidget/relationalTree/indexIndented.html
@@ -0,0 +1,18 @@
+<!DOCTYPE html>
+
+<html>
+<head>
+ <link rel="stylesheet" href="css/ontology.css">
+ <script type="text/javascript" src="lib/d3.js"></script>
+ <meta http-equiv="content-type" content="text/html; charset=UTF8">
+ <script src="script/jquery.min.1.11.2.js" ></script>
+ <script src="script/relationalTreeIndented.js" ></script>
+
+
+
+ <!--<script src="http://ajax.googleapis.com/ajax/libs/jquery/1.11.2/jquery.min.js"></script>-->
+</head>
+<body>
+<div id="myid" class="term-relational-tree" data-label="insomnia" data-ontology-name="EFO" data-json-path="http://localhost:8983/solr/ontology/select?q=label%3ALABEL_TO_REPLACE+AND+ontology_name%3AONTOLOGY_NAME_TO_REPLACE&rows=1&wt=json&indent=true"></div>
+</body>
+</html>
\ No newline at end of file
diff --git a/ols-ui/ontologyWidget/relationalTree/png/button-closed.png b/ols-ui/ontologyWidget/relationalTree/png/button-closed.png
new file mode 100644
index 00000000..417eb2fc
Binary files /dev/null and b/ols-ui/ontologyWidget/relationalTree/png/button-closed.png differ
diff --git a/ols-ui/ontologyWidget/relationalTree/png/button-open.png b/ols-ui/ontologyWidget/relationalTree/png/button-open.png
new file mode 100644
index 00000000..ac4a6ef3
Binary files /dev/null and b/ols-ui/ontologyWidget/relationalTree/png/button-open.png differ
diff --git a/ols-ui/ontologyWidget/relationalTree/png/button.png b/ols-ui/ontologyWidget/relationalTree/png/button.png
new file mode 100644
index 00000000..631d734d
Binary files /dev/null and b/ols-ui/ontologyWidget/relationalTree/png/button.png differ
diff --git a/ols-ui/ontologyWidget/relationalTree/script/CollapsibleLists.js b/ols-ui/ontologyWidget/relationalTree/script/CollapsibleLists.js
new file mode 100644
index 00000000..d5f0988e
--- /dev/null
+++ b/ols-ui/ontologyWidget/relationalTree/script/CollapsibleLists.js
@@ -0,0 +1,183 @@
+/*
+
+CollapsibleLists.js
+
+An object allowing lists to dynamically expand and collapse
+
+Created by Stephen Morley - http://code.stephenmorley.org/ - and released under
+the terms of the CC0 1.0 Universal legal code:
+
+http://creativecommons.org/publicdomain/zero/1.0/legalcode
+
+*/
+
+// create the CollapsibleLists object
+var CollapsibleLists =
+ new function(){
+
+ /* Makes all lists with the class 'collapsibleList' collapsible. The
+ * parameter is:
+ *
+ * doNotRecurse - true if sub-lists should not be made collapsible
+ */
+ this.apply = function(doNotRecurse){
+ console.log("ALERT apply: !!!!!!!!! \n\n");
+
+ // loop over the unordered lists
+ var uls = document.getElementsByTagName('ul');
+ for (var index = 0; index < uls.length; index ++){
+ // check whether this list should be made collapsible
+ if (uls[index].className.match(/(^| )collapsibleList( |$)/)){
+
+ // make this list collapsible
+ this.applyTo(uls[index], true);
+
+ // check whether sub-lists should also be made collapsible
+ if (!doNotRecurse){
+
+ // add the collapsibleList class to the sub-lists
+ var subUls = uls[index].getElementsByTagName('ul');
+ for (var subIndex = 0; subIndex < subUls.length; subIndex ++){
+ subUls[subIndex].className += ' collapsibleList';
+ }
+
+ }
+
+ }
+
+ }
+
+ };
+
+ /* Makes the specified list collapsible. The parameters are:
+ *
+ * node - the list element
+ * doNotRecurse - true if sub-lists should not be made collapsible
+ */
+ this.applyTo = function(node, doNotRecurse){
+ console.log("ALERT applyTo: !!!!!!!!! \n\n");
+
+ // loop over the list items within this node
+ var lis = node.getElementsByTagName('li');
+ for (var index = 0; index < lis.length; index ++){
+
+ // check whether this list item should be collapsible
+ if (!doNotRecurse || node == lis[index].parentNode){
+
+ // prevent text from being selected unintentionally
+ if (lis[index].addEventListener){
+ lis[index].addEventListener(
+ 'mousedown', function (e){ e.preventDefault(); }, false);
+ }else{
+ lis[index].attachEvent(
+ 'onselectstart', function(){ event.returnValue = false; });
+ }
+
+ // add the click listener
+ if (lis[index].addEventListener){
+ lis[index].addEventListener(
+ 'click', createClickListener(lis[index]), false);
+ }else {
+
+ lis[index].attachEvent(
+ 'onclick', createClickListener(lis[index]));
+ }
+
+ // close the unordered lists within this list item
+ openAll(lis[index]);
+
+ }
+
+ }
+
+ };
+
+ /* Returns a function that toggles the display status of any unordered
+ * list elements within the specified node. The parameter is:
+ *
+ * node - the node containing the unordered list elements
+ */
+ function createClickListener(node){
+ console.log("ALERT createClickListener: !!!!!!!!! \n\n");
+
+ // return the function
+ return function(e){
+
+ // ensure the event object is defined
+ if (!e) e = window.event;
+
+ // find the list item containing the target of the event
+ var li = (e.target ? e.target : e.srcElement);
+ while (li.nodeName != 'LI') li = li.parentNode;
+
+ // toggle the state of the node if it was the target of the event
+ if (li == node) toggle(node);
+
+ };
+
+ }
+
+
+ function openAll(node){
+ console.log("ALERT openAll: !!!!!!!!! \n\n");
+
+ // determine whether to open or close the unordered lists
+ var open = node.className.match(/(^| )collapsibleList( |$)/);
+
+ // loop over the unordered list elements with the node
+ var uls = node.getElementsByTagName('ul');
+
+ // if the node contains unordered lists, set its class
+ if (uls.length > 0) {
+ node.className += ' collapsibleListOpen';
+ }
+ }
+
+
+ /* Opens or closes the unordered list elements directly within the
+ * specified node. The parameter is:
+ *
+ * node - the node containing the unordered list elements
+ */
+ function toggle(node) {
+ console.log("ALERT toggle: !!!!!!!!! \n\n");
+ // determine whether to open or close the unordered lists
+ var open = node.className.match(/(^| )collapsibleListClosed( |$)/);
+
+ // loop over the unordered list elements with the node
+ var uls = node.getElementsByTagName('ul');
+
+ for (var index = 0; index < uls.length; index++) {
+
+ // find the parent list item of this unordered list
+ var li = uls[index];
+
+ var liClass = li.className;
+ console.log("ALERT li.className = " + liClass + " !!!!!!!!\n\n");
+
+ console.log("li.nodeName = " + li.nodeName);
+ while (li.nodeName != 'LI') li = li.parentNode;
+
+ // style the unordered list if it is directly within this node
+ if (li == node) uls[index].style.display = (open ? 'block' : 'none');
+
+ }
+
+ // remove the current class from the node
+ console.log("ALERT node.className = " + node.className + " !!!!!!!!\n\n");
+ console.log("ALERT node.id = " + node.id + " !!!!!!!!\n\n");
+ if (node.className.indexOf('solrCollapsibleListOpen') == -1 && node.className.indexOf('solrCollapsibleListClosed')){
+ node.className =
+ node.className.replace(
+ /(^| )collapsibleList(Open|Closed)( |$)/, '');
+
+ // if the node contains unordered lists, set its class
+ if (uls.length > 0) {
+ node.className += ' collapsibleList' + (open ? 'Open' : 'Closed');
+ }
+ }
+
+ }
+
+
+ }();
diff --git a/ols-ui/ontologyWidget/relationalTree/script/d3.js b/ols-ui/ontologyWidget/relationalTree/script/d3.js
new file mode 100644
index 00000000..8868e425
--- /dev/null
+++ b/ols-ui/ontologyWidget/relationalTree/script/d3.js
@@ -0,0 +1,9504 @@
+!function() {
+ var d3 = {
+ version: "3.5.5"
+ };
+ var d3_arraySlice = [].slice, d3_array = function(list) {
+ return d3_arraySlice.call(list);
+ };
+ var d3_document = this.document;
+ function d3_documentElement(node) {
+ return node && (node.ownerDocument || node.document || node).documentElement;
+ }
+ function d3_window(node) {
+ return node && (node.ownerDocument && node.ownerDocument.defaultView || node.document && node || node.defaultView);
+ }
+ if (d3_document) {
+ try {
+ d3_array(d3_document.documentElement.childNodes)[0].nodeType;
+ } catch (e) {
+ d3_array = function(list) {
+ var i = list.length, array = new Array(i);
+ while (i--) array[i] = list[i];
+ return array;
+ };
+ }
+ }
+ if (!Date.now) Date.now = function() {
+ return +new Date();
+ };
+ if (d3_document) {
+ try {
+ d3_document.createElement("DIV").style.setProperty("opacity", 0, "");
+ } catch (error) {
+ var d3_element_prototype = this.Element.prototype, d3_element_setAttribute = d3_element_prototype.setAttribute, d3_element_setAttributeNS = d3_element_prototype.setAttributeNS, d3_style_prototype = this.CSSStyleDeclaration.prototype, d3_style_setProperty = d3_style_prototype.setProperty;
+ d3_element_prototype.setAttribute = function(name, value) {
+ d3_element_setAttribute.call(this, name, value + "");
+ };
+ d3_element_prototype.setAttributeNS = function(space, local, value) {
+ d3_element_setAttributeNS.call(this, space, local, value + "");
+ };
+ d3_style_prototype.setProperty = function(name, value, priority) {
+ d3_style_setProperty.call(this, name, value + "", priority);
+ };
+ }
+ }
+ d3.ascending = d3_ascending;
+ function d3_ascending(a, b) {
+ return a < b ? -1 : a > b ? 1 : a >= b ? 0 : NaN;
+ }
+ d3.descending = function(a, b) {
+ return b < a ? -1 : b > a ? 1 : b >= a ? 0 : NaN;
+ };
+ d3.min = function(array, f) {
+ var i = -1, n = array.length, a, b;
+ if (arguments.length === 1) {
+ while (++i < n) if ((b = array[i]) != null && b >= b) {
+ a = b;
+ break;
+ }
+ while (++i < n) if ((b = array[i]) != null && a > b) a = b;
+ } else {
+ while (++i < n) if ((b = f.call(array, array[i], i)) != null && b >= b) {
+ a = b;
+ break;
+ }
+ while (++i < n) if ((b = f.call(array, array[i], i)) != null && a > b) a = b;
+ }
+ return a;
+ };
+ d3.max = function(array, f) {
+ var i = -1, n = array.length, a, b;
+ if (arguments.length === 1) {
+ while (++i < n) if ((b = array[i]) != null && b >= b) {
+ a = b;
+ break;
+ }
+ while (++i < n) if ((b = array[i]) != null && b > a) a = b;
+ } else {
+ while (++i < n) if ((b = f.call(array, array[i], i)) != null && b >= b) {
+ a = b;
+ break;
+ }
+ while (++i < n) if ((b = f.call(array, array[i], i)) != null && b > a) a = b;
+ }
+ return a;
+ };
+ d3.extent = function(array, f) {
+ var i = -1, n = array.length, a, b, c;
+ if (arguments.length === 1) {
+ while (++i < n) if ((b = array[i]) != null && b >= b) {
+ a = c = b;
+ break;
+ }
+ while (++i < n) if ((b = array[i]) != null) {
+ if (a > b) a = b;
+ if (c < b) c = b;
+ }
+ } else {
+ while (++i < n) if ((b = f.call(array, array[i], i)) != null && b >= b) {
+ a = c = b;
+ break;
+ }
+ while (++i < n) if ((b = f.call(array, array[i], i)) != null) {
+ if (a > b) a = b;
+ if (c < b) c = b;
+ }
+ }
+ return [ a, c ];
+ };
+ function d3_number(x) {
+ return x === null ? NaN : +x;
+ }
+ function d3_numeric(x) {
+ return !isNaN(x);
+ }
+ d3.sum = function(array, f) {
+ var s = 0, n = array.length, a, i = -1;
+ if (arguments.length === 1) {
+ while (++i < n) if (d3_numeric(a = +array[i])) s += a;
+ } else {
+ while (++i < n) if (d3_numeric(a = +f.call(array, array[i], i))) s += a;
+ }
+ return s;
+ };
+ d3.mean = function(array, f) {
+ var s = 0, n = array.length, a, i = -1, j = n;
+ if (arguments.length === 1) {
+ while (++i < n) if (d3_numeric(a = d3_number(array[i]))) s += a; else --j;
+ } else {
+ while (++i < n) if (d3_numeric(a = d3_number(f.call(array, array[i], i)))) s += a; else --j;
+ }
+ if (j) return s / j;
+ };
+ d3.quantile = function(values, p) {
+ var H = (values.length - 1) * p + 1, h = Math.floor(H), v = +values[h - 1], e = H - h;
+ return e ? v + e * (values[h] - v) : v;
+ };
+ d3.median = function(array, f) {
+ var numbers = [], n = array.length, a, i = -1;
+ if (arguments.length === 1) {
+ while (++i < n) if (d3_numeric(a = d3_number(array[i]))) numbers.push(a);
+ } else {
+ while (++i < n) if (d3_numeric(a = d3_number(f.call(array, array[i], i)))) numbers.push(a);
+ }
+ if (numbers.length) return d3.quantile(numbers.sort(d3_ascending), .5);
+ };
+ d3.variance = function(array, f) {
+ var n = array.length, m = 0, a, d, s = 0, i = -1, j = 0;
+ if (arguments.length === 1) {
+ while (++i < n) {
+ if (d3_numeric(a = d3_number(array[i]))) {
+ d = a - m;
+ m += d / ++j;
+ s += d * (a - m);
+ }
+ }
+ } else {
+ while (++i < n) {
+ if (d3_numeric(a = d3_number(f.call(array, array[i], i)))) {
+ d = a - m;
+ m += d / ++j;
+ s += d * (a - m);
+ }
+ }
+ }
+ if (j > 1) return s / (j - 1);
+ };
+ d3.deviation = function() {
+ var v = d3.variance.apply(this, arguments);
+ return v ? Math.sqrt(v) : v;
+ };
+ function d3_bisector(compare) {
+ return {
+ left: function(a, x, lo, hi) {
+ if (arguments.length < 3) lo = 0;
+ if (arguments.length < 4) hi = a.length;
+ while (lo < hi) {
+ var mid = lo + hi >>> 1;
+ if (compare(a[mid], x) < 0) lo = mid + 1; else hi = mid;
+ }
+ return lo;
+ },
+ right: function(a, x, lo, hi) {
+ if (arguments.length < 3) lo = 0;
+ if (arguments.length < 4) hi = a.length;
+ while (lo < hi) {
+ var mid = lo + hi >>> 1;
+ if (compare(a[mid], x) > 0) hi = mid; else lo = mid + 1;
+ }
+ return lo;
+ }
+ };
+ }
+ var d3_bisect = d3_bisector(d3_ascending);
+ d3.bisectLeft = d3_bisect.left;
+ d3.bisect = d3.bisectRight = d3_bisect.right;
+ d3.bisector = function(f) {
+ return d3_bisector(f.length === 1 ? function(d, x) {
+ return d3_ascending(f(d), x);
+ } : f);
+ };
+ d3.shuffle = function(array, i0, i1) {
+ if ((m = arguments.length) < 3) {
+ i1 = array.length;
+ if (m < 2) i0 = 0;
+ }
+ var m = i1 - i0, t, i;
+ while (m) {
+ i = Math.random() * m-- | 0;
+ t = array[m + i0], array[m + i0] = array[i + i0], array[i + i0] = t;
+ }
+ return array;
+ };
+ d3.permute = function(array, indexes) {
+ var i = indexes.length, permutes = new Array(i);
+ while (i--) permutes[i] = array[indexes[i]];
+ return permutes;
+ };
+ d3.pairs = function(array) {
+ var i = 0, n = array.length - 1, p0, p1 = array[0], pairs = new Array(n < 0 ? 0 : n);
+ while (i < n) pairs[i] = [ p0 = p1, p1 = array[++i] ];
+ return pairs;
+ };
+ d3.zip = function() {
+ if (!(n = arguments.length)) return [];
+ for (var i = -1, m = d3.min(arguments, d3_zipLength), zips = new Array(m); ++i < m; ) {
+ for (var j = -1, n, zip = zips[i] = new Array(n); ++j < n; ) {
+ zip[j] = arguments[j][i];
+ }
+ }
+ return zips;
+ };
+ function d3_zipLength(d) {
+ return d.length;
+ }
+ d3.transpose = function(matrix) {
+ return d3.zip.apply(d3, matrix);
+ };
+ d3.keys = function(map) {
+ var keys = [];
+ for (var key in map) keys.push(key);
+ return keys;
+ };
+ d3.values = function(map) {
+ var values = [];
+ for (var key in map) values.push(map[key]);
+ return values;
+ };
+ d3.entries = function(map) {
+ var entries = [];
+ for (var key in map) entries.push({
+ key: key,
+ value: map[key]
+ });
+ return entries;
+ };
+ d3.merge = function(arrays) {
+ var n = arrays.length, m, i = -1, j = 0, merged, array;
+ while (++i < n) j += arrays[i].length;
+ merged = new Array(j);
+ while (--n >= 0) {
+ array = arrays[n];
+ m = array.length;
+ while (--m >= 0) {
+ merged[--j] = array[m];
+ }
+ }
+ return merged;
+ };
+ var abs = Math.abs;
+ d3.range = function(start, stop, step) {
+ if (arguments.length < 3) {
+ step = 1;
+ if (arguments.length < 2) {
+ stop = start;
+ start = 0;
+ }
+ }
+ if ((stop - start) / step === Infinity) throw new Error("infinite range");
+ var range = [], k = d3_range_integerScale(abs(step)), i = -1, j;
+ start *= k, stop *= k, step *= k;
+ if (step < 0) while ((j = start + step * ++i) > stop) range.push(j / k); else while ((j = start + step * ++i) < stop) range.push(j / k);
+ return range;
+ };
+ function d3_range_integerScale(x) {
+ var k = 1;
+ while (x * k % 1) k *= 10;
+ return k;
+ }
+ function d3_class(ctor, properties) {
+ for (var key in properties) {
+ Object.defineProperty(ctor.prototype, key, {
+ value: properties[key],
+ enumerable: false
+ });
+ }
+ }
+ d3.map = function(object, f) {
+ var map = new d3_Map();
+ if (object instanceof d3_Map) {
+ object.forEach(function(key, value) {
+ map.set(key, value);
+ });
+ } else if (Array.isArray(object)) {
+ var i = -1, n = object.length, o;
+ if (arguments.length === 1) while (++i < n) map.set(i, object[i]); else while (++i < n) map.set(f.call(object, o = object[i], i), o);
+ } else {
+ for (var key in object) map.set(key, object[key]);
+ }
+ return map;
+ };
+ function d3_Map() {
+ this._ = Object.create(null);
+ }
+ var d3_map_proto = "__proto__", d3_map_zero = "\x00";
+ d3_class(d3_Map, {
+ has: d3_map_has,
+ get: function(key) {
+ return this._[d3_map_escape(key)];
+ },
+ set: function(key, value) {
+ return this._[d3_map_escape(key)] = value;
+ },
+ remove: d3_map_remove,
+ keys: d3_map_keys,
+ values: function() {
+ var values = [];
+ for (var key in this._) values.push(this._[key]);
+ return values;
+ },
+ entries: function() {
+ var entries = [];
+ for (var key in this._) entries.push({
+ key: d3_map_unescape(key),
+ value: this._[key]
+ });
+ return entries;
+ },
+ size: d3_map_size,
+ empty: d3_map_empty,
+ forEach: function(f) {
+ for (var key in this._) f.call(this, d3_map_unescape(key), this._[key]);
+ }
+ });
+ function d3_map_escape(key) {
+ return (key += "") === d3_map_proto || key[0] === d3_map_zero ? d3_map_zero + key : key;
+ }
+ function d3_map_unescape(key) {
+ return (key += "")[0] === d3_map_zero ? key.slice(1) : key;
+ }
+ function d3_map_has(key) {
+ return d3_map_escape(key) in this._;
+ }
+ function d3_map_remove(key) {
+ return (key = d3_map_escape(key)) in this._ && delete this._[key];
+ }
+ function d3_map_keys() {
+ var keys = [];
+ for (var key in this._) keys.push(d3_map_unescape(key));
+ return keys;
+ }
+ function d3_map_size() {
+ var size = 0;
+ for (var key in this._) ++size;
+ return size;
+ }
+ function d3_map_empty() {
+ for (var key in this._) return false;
+ return true;
+ }
+ d3.nest = function() {
+ var nest = {}, keys = [], sortKeys = [], sortValues, rollup;
+ function map(mapType, array, depth) {
+ if (depth >= keys.length) return rollup ? rollup.call(nest, array) : sortValues ? array.sort(sortValues) : array;
+ var i = -1, n = array.length, key = keys[depth++], keyValue, object, setter, valuesByKey = new d3_Map(), values;
+ while (++i < n) {
+ if (values = valuesByKey.get(keyValue = key(object = array[i]))) {
+ values.push(object);
+ } else {
+ valuesByKey.set(keyValue, [ object ]);
+ }
+ }
+ if (mapType) {
+ object = mapType();
+ setter = function(keyValue, values) {
+ object.set(keyValue, map(mapType, values, depth));
+ };
+ } else {
+ object = {};
+ setter = function(keyValue, values) {
+ object[keyValue] = map(mapType, values, depth);
+ };
+ }
+ valuesByKey.forEach(setter);
+ return object;
+ }
+ function entries(map, depth) {
+ if (depth >= keys.length) return map;
+ var array = [], sortKey = sortKeys[depth++];
+ map.forEach(function(key, keyMap) {
+ array.push({
+ key: key,
+ values: entries(keyMap, depth)
+ });
+ });
+ return sortKey ? array.sort(function(a, b) {
+ return sortKey(a.key, b.key);
+ }) : array;
+ }
+ nest.map = function(array, mapType) {
+ return map(mapType, array, 0);
+ };
+ nest.entries = function(array) {
+ return entries(map(d3.map, array, 0), 0);
+ };
+ nest.key = function(d) {
+ keys.push(d);
+ return nest;
+ };
+ nest.sortKeys = function(order) {
+ sortKeys[keys.length - 1] = order;
+ return nest;
+ };
+ nest.sortValues = function(order) {
+ sortValues = order;
+ return nest;
+ };
+ nest.rollup = function(f) {
+ rollup = f;
+ return nest;
+ };
+ return nest;
+ };
+ d3.set = function(array) {
+ var set = new d3_Set();
+ if (array) for (var i = 0, n = array.length; i < n; ++i) set.add(array[i]);
+ return set;
+ };
+ function d3_Set() {
+ this._ = Object.create(null);
+ }
+ d3_class(d3_Set, {
+ has: d3_map_has,
+ add: function(key) {
+ this._[d3_map_escape(key += "")] = true;
+ return key;
+ },
+ remove: d3_map_remove,
+ values: d3_map_keys,
+ size: d3_map_size,
+ empty: d3_map_empty,
+ forEach: function(f) {
+ for (var key in this._) f.call(this, d3_map_unescape(key));
+ }
+ });
+ d3.behavior = {};
+ function d3_identity(d) {
+ return d;
+ }
+ d3.rebind = function(target, source) {
+ var i = 1, n = arguments.length, method;
+ while (++i < n) target[method = arguments[i]] = d3_rebind(target, source, source[method]);
+ return target;
+ };
+ function d3_rebind(target, source, method) {
+ return function() {
+ var value = method.apply(source, arguments);
+ return value === source ? target : value;
+ };
+ }
+ function d3_vendorSymbol(object, name) {
+ if (name in object) return name;
+ name = name.charAt(0).toUpperCase() + name.slice(1);
+ for (var i = 0, n = d3_vendorPrefixes.length; i < n; ++i) {
+ var prefixName = d3_vendorPrefixes[i] + name;
+ if (prefixName in object) return prefixName;
+ }
+ }
+ var d3_vendorPrefixes = [ "webkit", "ms", "moz", "Moz", "o", "O" ];
+ function d3_noop() {}
+ d3.dispatch = function() {
+ var dispatch = new d3_dispatch(), i = -1, n = arguments.length;
+ while (++i < n) dispatch[arguments[i]] = d3_dispatch_event(dispatch);
+ return dispatch;
+ };
+ function d3_dispatch() {}
+ d3_dispatch.prototype.on = function(type, listener) {
+ var i = type.indexOf("."), name = "";
+ if (i >= 0) {
+ name = type.slice(i + 1);
+ type = type.slice(0, i);
+ }
+ if (type) return arguments.length < 2 ? this[type].on(name) : this[type].on(name, listener);
+ if (arguments.length === 2) {
+ if (listener == null) for (type in this) {
+ if (this.hasOwnProperty(type)) this[type].on(name, null);
+ }
+ return this;
+ }
+ };
+ function d3_dispatch_event(dispatch) {
+ var listeners = [], listenerByName = new d3_Map();
+ function event() {
+ var z = listeners, i = -1, n = z.length, l;
+ while (++i < n) if (l = z[i].on) l.apply(this, arguments);
+ return dispatch;
+ }
+ event.on = function(name, listener) {
+ var l = listenerByName.get(name), i;
+ if (arguments.length < 2) return l && l.on;
+ if (l) {
+ l.on = null;
+ listeners = listeners.slice(0, i = listeners.indexOf(l)).concat(listeners.slice(i + 1));
+ listenerByName.remove(name);
+ }
+ if (listener) listeners.push(listenerByName.set(name, {
+ on: listener
+ }));
+ return dispatch;
+ };
+ return event;
+ }
+ d3.event = null;
+ function d3_eventPreventDefault() {
+ d3.event.preventDefault();
+ }
+ function d3_eventSource() {
+ var e = d3.event, s;
+ while (s = e.sourceEvent) e = s;
+ return e;
+ }
+ function d3_eventDispatch(target) {
+ var dispatch = new d3_dispatch(), i = 0, n = arguments.length;
+ while (++i < n) dispatch[arguments[i]] = d3_dispatch_event(dispatch);
+ dispatch.of = function(thiz, argumentz) {
+ return function(e1) {
+ try {
+ var e0 = e1.sourceEvent = d3.event;
+ e1.target = target;
+ d3.event = e1;
+ dispatch[e1.type].apply(thiz, argumentz);
+ } finally {
+ d3.event = e0;
+ }
+ };
+ };
+ return dispatch;
+ }
+ d3.requote = function(s) {
+ return s.replace(d3_requote_re, "\\$&");
+ };
+ var d3_requote_re = /[\\\^\$\*\+\?\|\[\]\(\)\.\{\}]/g;
+ var d3_subclass = {}.__proto__ ? function(object, prototype) {
+ object.__proto__ = prototype;
+ } : function(object, prototype) {
+ for (var property in prototype) object[property] = prototype[property];
+ };
+ function d3_selection(groups) {
+ d3_subclass(groups, d3_selectionPrototype);
+ return groups;
+ }
+ var d3_select = function(s, n) {
+ return n.querySelector(s);
+ }, d3_selectAll = function(s, n) {
+ return n.querySelectorAll(s);
+ }, d3_selectMatches = function(n, s) {
+ var d3_selectMatcher = n.matches || n[d3_vendorSymbol(n, "matchesSelector")];
+ d3_selectMatches = function(n, s) {
+ return d3_selectMatcher.call(n, s);
+ };
+ return d3_selectMatches(n, s);
+ };
+ if (typeof Sizzle === "function") {
+ d3_select = function(s, n) {
+ return Sizzle(s, n)[0] || null;
+ };
+ d3_selectAll = Sizzle;
+ d3_selectMatches = Sizzle.matchesSelector;
+ }
+ d3.selection = function() {
+ return d3.select(d3_document.documentElement);
+ };
+ var d3_selectionPrototype = d3.selection.prototype = [];
+ d3_selectionPrototype.select = function(selector) {
+ var subgroups = [], subgroup, subnode, group, node;
+ selector = d3_selection_selector(selector);
+ for (var j = -1, m = this.length; ++j < m; ) {
+ subgroups.push(subgroup = []);
+ subgroup.parentNode = (group = this[j]).parentNode;
+ for (var i = -1, n = group.length; ++i < n; ) {
+ if (node = group[i]) {
+ subgroup.push(subnode = selector.call(node, node.__data__, i, j));
+ if (subnode && "__data__" in node) subnode.__data__ = node.__data__;
+ } else {
+ subgroup.push(null);
+ }
+ }
+ }
+ return d3_selection(subgroups);
+ };
+ function d3_selection_selector(selector) {
+ return typeof selector === "function" ? selector : function() {
+ return d3_select(selector, this);
+ };
+ }
+ d3_selectionPrototype.selectAll = function(selector) {
+ var subgroups = [], subgroup, node;
+ selector = d3_selection_selectorAll(selector);
+ for (var j = -1, m = this.length; ++j < m; ) {
+ for (var group = this[j], i = -1, n = group.length; ++i < n; ) {
+ if (node = group[i]) {
+ subgroups.push(subgroup = d3_array(selector.call(node, node.__data__, i, j)));
+ subgroup.parentNode = node;
+ }
+ }
+ }
+ return d3_selection(subgroups);
+ };
+ function d3_selection_selectorAll(selector) {
+ return typeof selector === "function" ? selector : function() {
+ return d3_selectAll(selector, this);
+ };
+ }
+ var d3_nsPrefix = {
+ svg: "http://www.w3.org/2000/svg",
+ xhtml: "http://www.w3.org/1999/xhtml",
+ xlink: "http://www.w3.org/1999/xlink",
+ xml: "http://www.w3.org/XML/1998/namespace",
+ xmlns: "http://www.w3.org/2000/xmlns/"
+ };
+ d3.ns = {
+ prefix: d3_nsPrefix,
+ qualify: function(name) {
+ var i = name.indexOf(":"), prefix = name;
+ if (i >= 0) {
+ prefix = name.slice(0, i);
+ name = name.slice(i + 1);
+ }
+ return d3_nsPrefix.hasOwnProperty(prefix) ? {
+ space: d3_nsPrefix[prefix],
+ local: name
+ } : name;
+ }
+ };
+ d3_selectionPrototype.attr = function(name, value) {
+ if (arguments.length < 2) {
+ if (typeof name === "string") {
+ var node = this.node();
+ name = d3.ns.qualify(name);
+ return name.local ? node.getAttributeNS(name.space, name.local) : node.getAttribute(name);
+ }
+ for (value in name) this.each(d3_selection_attr(value, name[value]));
+ return this;
+ }
+ return this.each(d3_selection_attr(name, value));
+ };
+ function d3_selection_attr(name, value) {
+ name = d3.ns.qualify(name);
+ function attrNull() {
+ this.removeAttribute(name);
+ }
+ function attrNullNS() {
+ this.removeAttributeNS(name.space, name.local);
+ }
+ function attrConstant() {
+ this.setAttribute(name, value);
+ }
+ function attrConstantNS() {
+ this.setAttributeNS(name.space, name.local, value);
+ }
+ function attrFunction() {
+ var x = value.apply(this, arguments);
+ if (x == null) this.removeAttribute(name); else this.setAttribute(name, x);
+ }
+ function attrFunctionNS() {
+ var x = value.apply(this, arguments);
+ if (x == null) this.removeAttributeNS(name.space, name.local); else this.setAttributeNS(name.space, name.local, x);
+ }
+ return value == null ? name.local ? attrNullNS : attrNull : typeof value === "function" ? name.local ? attrFunctionNS : attrFunction : name.local ? attrConstantNS : attrConstant;
+ }
+ function d3_collapse(s) {
+ return s.trim().replace(/\s+/g, " ");
+ }
+ d3_selectionPrototype.classed = function(name, value) {
+ if (arguments.length < 2) {
+ if (typeof name === "string") {
+ var node = this.node(), n = (name = d3_selection_classes(name)).length, i = -1;
+ if (value = node.classList) {
+ while (++i < n) if (!value.contains(name[i])) return false;
+ } else {
+ value = node.getAttribute("class");
+ while (++i < n) if (!d3_selection_classedRe(name[i]).test(value)) return false;
+ }
+ return true;
+ }
+ for (value in name) this.each(d3_selection_classed(value, name[value]));
+ return this;
+ }
+ return this.each(d3_selection_classed(name, value));
+ };
+ function d3_selection_classedRe(name) {
+ return new RegExp("(?:^|\\s+)" + d3.requote(name) + "(?:\\s+|$)", "g");
+ }
+ function d3_selection_classes(name) {
+ return (name + "").trim().split(/^|\s+/);
+ }
+ function d3_selection_classed(name, value) {
+ name = d3_selection_classes(name).map(d3_selection_classedName);
+ var n = name.length;
+ function classedConstant() {
+ var i = -1;
+ while (++i < n) name[i](this, value);
+ }
+ function classedFunction() {
+ var i = -1, x = value.apply(this, arguments);
+ while (++i < n) name[i](this, x);
+ }
+ return typeof value === "function" ? classedFunction : classedConstant;
+ }
+ function d3_selection_classedName(name) {
+ var re = d3_selection_classedRe(name);
+ return function(node, value) {
+ if (c = node.classList) return value ? c.add(name) : c.remove(name);
+ var c = node.getAttribute("class") || "";
+ if (value) {
+ re.lastIndex = 0;
+ if (!re.test(c)) node.setAttribute("class", d3_collapse(c + " " + name));
+ } else {
+ node.setAttribute("class", d3_collapse(c.replace(re, " ")));
+ }
+ };
+ }
+ d3_selectionPrototype.style = function(name, value, priority) {
+ var n = arguments.length;
+ if (n < 3) {
+ if (typeof name !== "string") {
+ if (n < 2) value = "";
+ for (priority in name) this.each(d3_selection_style(priority, name[priority], value));
+ return this;
+ }
+ if (n < 2) {
+ var node = this.node();
+ return d3_window(node).getComputedStyle(node, null).getPropertyValue(name);
+ }
+ priority = "";
+ }
+ return this.each(d3_selection_style(name, value, priority));
+ };
+ function d3_selection_style(name, value, priority) {
+ function styleNull() {
+ this.style.removeProperty(name);
+ }
+ function styleConstant() {
+ this.style.setProperty(name, value, priority);
+ }
+ function styleFunction() {
+ var x = value.apply(this, arguments);
+ if (x == null) this.style.removeProperty(name); else this.style.setProperty(name, x, priority);
+ }
+ return value == null ? styleNull : typeof value === "function" ? styleFunction : styleConstant;
+ }
+ d3_selectionPrototype.property = function(name, value) {
+ if (arguments.length < 2) {
+ if (typeof name === "string") return this.node()[name];
+ for (value in name) this.each(d3_selection_property(value, name[value]));
+ return this;
+ }
+ return this.each(d3_selection_property(name, value));
+ };
+ function d3_selection_property(name, value) {
+ function propertyNull() {
+ delete this[name];
+ }
+ function propertyConstant() {
+ this[name] = value;
+ }
+ function propertyFunction() {
+ var x = value.apply(this, arguments);
+ if (x == null) delete this[name]; else this[name] = x;
+ }
+ return value == null ? propertyNull : typeof value === "function" ? propertyFunction : propertyConstant;
+ }
+ d3_selectionPrototype.text = function(value) {
+ return arguments.length ? this.each(typeof value === "function" ? function() {
+ var v = value.apply(this, arguments);
+ this.textContent = v == null ? "" : v;
+ } : value == null ? function() {
+ this.textContent = "";
+ } : function() {
+ this.textContent = value;
+ }) : this.node().textContent;
+ };
+ d3_selectionPrototype.html = function(value) {
+ return arguments.length ? this.each(typeof value === "function" ? function() {
+ var v = value.apply(this, arguments);
+ this.innerHTML = v == null ? "" : v;
+ } : value == null ? function() {
+ this.innerHTML = "";
+ } : function() {
+ this.innerHTML = value;
+ }) : this.node().innerHTML;
+ };
+ d3_selectionPrototype.append = function(name) {
+ name = d3_selection_creator(name);
+ return this.select(function() {
+ return this.appendChild(name.apply(this, arguments));
+ });
+ };
+ function d3_selection_creator(name) {
+ function create() {
+ var document = this.ownerDocument, namespace = this.namespaceURI;
+ return namespace ? document.createElementNS(namespace, name) : document.createElement(name);
+ }
+ function createNS() {
+ return this.ownerDocument.createElementNS(name.space, name.local);
+ }
+ return typeof name === "function" ? name : (name = d3.ns.qualify(name)).local ? createNS : create;
+ }
+ d3_selectionPrototype.insert = function(name, before) {
+ name = d3_selection_creator(name);
+ before = d3_selection_selector(before);
+ return this.select(function() {
+ return this.insertBefore(name.apply(this, arguments), before.apply(this, arguments) || null);
+ });
+ };
+ d3_selectionPrototype.remove = function() {
+ return this.each(d3_selectionRemove);
+ };
+ function d3_selectionRemove() {
+ var parent = this.parentNode;
+ if (parent) parent.removeChild(this);
+ }
+ d3_selectionPrototype.data = function(value, key) {
+ var i = -1, n = this.length, group, node;
+ if (!arguments.length) {
+ value = new Array(n = (group = this[0]).length);
+ while (++i < n) {
+ if (node = group[i]) {
+ value[i] = node.__data__;
+ }
+ }
+ return value;
+ }
+ function bind(group, groupData) {
+ var i, n = group.length, m = groupData.length, n0 = Math.min(n, m), updateNodes = new Array(m), enterNodes = new Array(m), exitNodes = new Array(n), node, nodeData;
+ if (key) {
+ var nodeByKeyValue = new d3_Map(), keyValues = new Array(n), keyValue;
+ for (i = -1; ++i < n; ) {
+ if (nodeByKeyValue.has(keyValue = key.call(node = group[i], node.__data__, i))) {
+ exitNodes[i] = node;
+ } else {
+ nodeByKeyValue.set(keyValue, node);
+ }
+ keyValues[i] = keyValue;
+ }
+ for (i = -1; ++i < m; ) {
+ if (!(node = nodeByKeyValue.get(keyValue = key.call(groupData, nodeData = groupData[i], i)))) {
+ enterNodes[i] = d3_selection_dataNode(nodeData);
+ } else if (node !== true) {
+ updateNodes[i] = node;
+ node.__data__ = nodeData;
+ }
+ nodeByKeyValue.set(keyValue, true);
+ }
+ for (i = -1; ++i < n; ) {
+ if (nodeByKeyValue.get(keyValues[i]) !== true) {
+ exitNodes[i] = group[i];
+ }
+ }
+ } else {
+ for (i = -1; ++i < n0; ) {
+ node = group[i];
+ nodeData = groupData[i];
+ if (node) {
+ node.__data__ = nodeData;
+ updateNodes[i] = node;
+ } else {
+ enterNodes[i] = d3_selection_dataNode(nodeData);
+ }
+ }
+ for (;i < m; ++i) {
+ enterNodes[i] = d3_selection_dataNode(groupData[i]);
+ }
+ for (;i < n; ++i) {
+ exitNodes[i] = group[i];
+ }
+ }
+ enterNodes.update = updateNodes;
+ enterNodes.parentNode = updateNodes.parentNode = exitNodes.parentNode = group.parentNode;
+ enter.push(enterNodes);
+ update.push(updateNodes);
+ exit.push(exitNodes);
+ }
+ var enter = d3_selection_enter([]), update = d3_selection([]), exit = d3_selection([]);
+ if (typeof value === "function") {
+ while (++i < n) {
+ bind(group = this[i], value.call(group, group.parentNode.__data__, i));
+ }
+ } else {
+ while (++i < n) {
+ bind(group = this[i], value);
+ }
+ }
+ update.enter = function() {
+ return enter;
+ };
+ update.exit = function() {
+ return exit;
+ };
+ return update;
+ };
+ function d3_selection_dataNode(data) {
+ return {
+ __data__: data
+ };
+ }
+ d3_selectionPrototype.datum = function(value) {
+ return arguments.length ? this.property("__data__", value) : this.property("__data__");
+ };
+ d3_selectionPrototype.filter = function(filter) {
+ var subgroups = [], subgroup, group, node;
+ if (typeof filter !== "function") filter = d3_selection_filter(filter);
+ for (var j = 0, m = this.length; j < m; j++) {
+ subgroups.push(subgroup = []);
+ subgroup.parentNode = (group = this[j]).parentNode;
+ for (var i = 0, n = group.length; i < n; i++) {
+ if ((node = group[i]) && filter.call(node, node.__data__, i, j)) {
+ subgroup.push(node);
+ }
+ }
+ }
+ return d3_selection(subgroups);
+ };
+ function d3_selection_filter(selector) {
+ return function() {
+ return d3_selectMatches(this, selector);
+ };
+ }
+ d3_selectionPrototype.order = function() {
+ for (var j = -1, m = this.length; ++j < m; ) {
+ for (var group = this[j], i = group.length - 1, next = group[i], node; --i >= 0; ) {
+ if (node = group[i]) {
+ if (next && next !== node.nextSibling) next.parentNode.insertBefore(node, next);
+ next = node;
+ }
+ }
+ }
+ return this;
+ };
+ d3_selectionPrototype.sort = function(comparator) {
+ comparator = d3_selection_sortComparator.apply(this, arguments);
+ for (var j = -1, m = this.length; ++j < m; ) this[j].sort(comparator);
+ return this.order();
+ };
+ function d3_selection_sortComparator(comparator) {
+ if (!arguments.length) comparator = d3_ascending;
+ return function(a, b) {
+ return a && b ? comparator(a.__data__, b.__data__) : !a - !b;
+ };
+ }
+ d3_selectionPrototype.each = function(callback) {
+ return d3_selection_each(this, function(node, i, j) {
+ callback.call(node, node.__data__, i, j);
+ });
+ };
+ function d3_selection_each(groups, callback) {
+ for (var j = 0, m = groups.length; j < m; j++) {
+ for (var group = groups[j], i = 0, n = group.length, node; i < n; i++) {
+ if (node = group[i]) callback(node, i, j);
+ }
+ }
+ return groups;
+ }
+ d3_selectionPrototype.call = function(callback) {
+ var args = d3_array(arguments);
+ callback.apply(args[0] = this, args);
+ return this;
+ };
+ d3_selectionPrototype.empty = function() {
+ return !this.node();
+ };
+ d3_selectionPrototype.node = function() {
+ for (var j = 0, m = this.length; j < m; j++) {
+ for (var group = this[j], i = 0, n = group.length; i < n; i++) {
+ var node = group[i];
+ if (node) return node;
+ }
+ }
+ return null;
+ };
+ d3_selectionPrototype.size = function() {
+ var n = 0;
+ d3_selection_each(this, function() {
+ ++n;
+ });
+ return n;
+ };
+ function d3_selection_enter(selection) {
+ d3_subclass(selection, d3_selection_enterPrototype);
+ return selection;
+ }
+ var d3_selection_enterPrototype = [];
+ d3.selection.enter = d3_selection_enter;
+ d3.selection.enter.prototype = d3_selection_enterPrototype;
+ d3_selection_enterPrototype.append = d3_selectionPrototype.append;
+ d3_selection_enterPrototype.empty = d3_selectionPrototype.empty;
+ d3_selection_enterPrototype.node = d3_selectionPrototype.node;
+ d3_selection_enterPrototype.call = d3_selectionPrototype.call;
+ d3_selection_enterPrototype.size = d3_selectionPrototype.size;
+ d3_selection_enterPrototype.select = function(selector) {
+ var subgroups = [], subgroup, subnode, upgroup, group, node;
+ for (var j = -1, m = this.length; ++j < m; ) {
+ upgroup = (group = this[j]).update;
+ subgroups.push(subgroup = []);
+ subgroup.parentNode = group.parentNode;
+ for (var i = -1, n = group.length; ++i < n; ) {
+ if (node = group[i]) {
+ subgroup.push(upgroup[i] = subnode = selector.call(group.parentNode, node.__data__, i, j));
+ subnode.__data__ = node.__data__;
+ } else {
+ subgroup.push(null);
+ }
+ }
+ }
+ return d3_selection(subgroups);
+ };
+ d3_selection_enterPrototype.insert = function(name, before) {
+ if (arguments.length < 2) before = d3_selection_enterInsertBefore(this);
+ return d3_selectionPrototype.insert.call(this, name, before);
+ };
+ function d3_selection_enterInsertBefore(enter) {
+ var i0, j0;
+ return function(d, i, j) {
+ var group = enter[j].update, n = group.length, node;
+ if (j != j0) j0 = j, i0 = 0;
+ if (i >= i0) i0 = i + 1;
+ while (!(node = group[i0]) && ++i0 < n) ;
+ return node;
+ };
+ }
+ d3.select = function(node) {
+ var group;
+ if (typeof node === "string") {
+ group = [ d3_select(node, d3_document) ];
+ group.parentNode = d3_document.documentElement;
+ } else {
+ group = [ node ];
+ group.parentNode = d3_documentElement(node);
+ }
+ return d3_selection([ group ]);
+ };
+ d3.selectAll = function(nodes) {
+ var group;
+ if (typeof nodes === "string") {
+ group = d3_array(d3_selectAll(nodes, d3_document));
+ group.parentNode = d3_document.documentElement;
+ } else {
+ group = nodes;
+ group.parentNode = null;
+ }
+ return d3_selection([ group ]);
+ };
+ d3_selectionPrototype.on = function(type, listener, capture) {
+ var n = arguments.length;
+ if (n < 3) {
+ if (typeof type !== "string") {
+ if (n < 2) listener = false;
+ for (capture in type) this.each(d3_selection_on(capture, type[capture], listener));
+ return this;
+ }
+ if (n < 2) return (n = this.node()["__on" + type]) && n._;
+ capture = false;
+ }
+ return this.each(d3_selection_on(type, listener, capture));
+ };
+ function d3_selection_on(type, listener, capture) {
+ var name = "__on" + type, i = type.indexOf("."), wrap = d3_selection_onListener;
+ if (i > 0) type = type.slice(0, i);
+ var filter = d3_selection_onFilters.get(type);
+ if (filter) type = filter, wrap = d3_selection_onFilter;
+ function onRemove() {
+ var l = this[name];
+ if (l) {
+ this.removeEventListener(type, l, l.$);
+ delete this[name];
+ }
+ }
+ function onAdd() {
+ var l = wrap(listener, d3_array(arguments));
+ onRemove.call(this);
+ this.addEventListener(type, this[name] = l, l.$ = capture);
+ l._ = listener;
+ }
+ function removeAll() {
+ var re = new RegExp("^__on([^.]+)" + d3.requote(type) + "$"), match;
+ for (var name in this) {
+ if (match = name.match(re)) {
+ var l = this[name];
+ this.removeEventListener(match[1], l, l.$);
+ delete this[name];
+ }
+ }
+ }
+ return i ? listener ? onAdd : onRemove : listener ? d3_noop : removeAll;
+ }
+ var d3_selection_onFilters = d3.map({
+ mouseenter: "mouseover",
+ mouseleave: "mouseout"
+ });
+ if (d3_document) {
+ d3_selection_onFilters.forEach(function(k) {
+ if ("on" + k in d3_document) d3_selection_onFilters.remove(k);
+ });
+ }
+ function d3_selection_onListener(listener, argumentz) {
+ return function(e) {
+ var o = d3.event;
+ d3.event = e;
+ argumentz[0] = this.__data__;
+ try {
+ listener.apply(this, argumentz);
+ } finally {
+ d3.event = o;
+ }
+ };
+ }
+ function d3_selection_onFilter(listener, argumentz) {
+ var l = d3_selection_onListener(listener, argumentz);
+ return function(e) {
+ var target = this, related = e.relatedTarget;
+ if (!related || related !== target && !(related.compareDocumentPosition(target) & 8)) {
+ l.call(target, e);
+ }
+ };
+ }
+ var d3_event_dragSelect, d3_event_dragId = 0;
+ function d3_event_dragSuppress(node) {
+ var name = ".dragsuppress-" + ++d3_event_dragId, click = "click" + name, w = d3.select(d3_window(node)).on("touchmove" + name, d3_eventPreventDefault).on("dragstart" + name, d3_eventPreventDefault).on("selectstart" + name, d3_eventPreventDefault);
+ if (d3_event_dragSelect == null) {
+ d3_event_dragSelect = "onselectstart" in node ? false : d3_vendorSymbol(node.style, "userSelect");
+ }
+ if (d3_event_dragSelect) {
+ var style = d3_documentElement(node).style, select = style[d3_event_dragSelect];
+ style[d3_event_dragSelect] = "none";
+ }
+ return function(suppressClick) {
+ w.on(name, null);
+ if (d3_event_dragSelect) style[d3_event_dragSelect] = select;
+ if (suppressClick) {
+ var off = function() {
+ w.on(click, null);
+ };
+ w.on(click, function() {
+ d3_eventPreventDefault();
+ off();
+ }, true);
+ setTimeout(off, 0);
+ }
+ };
+ }
+ d3.mouse = function(container) {
+ return d3_mousePoint(container, d3_eventSource());
+ };
+ var d3_mouse_bug44083 = this.navigator && /WebKit/.test(this.navigator.userAgent) ? -1 : 0;
+ function d3_mousePoint(container, e) {
+ if (e.changedTouches) e = e.changedTouches[0];
+ var svg = container.ownerSVGElement || container;
+ if (svg.createSVGPoint) {
+ var point = svg.createSVGPoint();
+ if (d3_mouse_bug44083 < 0) {
+ var window = d3_window(container);
+ if (window.scrollX || window.scrollY) {
+ svg = d3.select("body").append("svg").style({
+ position: "absolute",
+ top: 0,
+ left: 0,
+ margin: 0,
+ padding: 0,
+ border: "none"
+ }, "important");
+ var ctm = svg[0][0].getScreenCTM();
+ d3_mouse_bug44083 = !(ctm.f || ctm.e);
+ svg.remove();
+ }
+ }
+ if (d3_mouse_bug44083) point.x = e.pageX, point.y = e.pageY; else point.x = e.clientX,
+ point.y = e.clientY;
+ point = point.matrixTransform(container.getScreenCTM().inverse());
+ return [ point.x, point.y ];
+ }
+ var rect = container.getBoundingClientRect();
+ return [ e.clientX - rect.left - container.clientLeft, e.clientY - rect.top - container.clientTop ];
+ }
+ d3.touch = function(container, touches, identifier) {
+ if (arguments.length < 3) identifier = touches, touches = d3_eventSource().changedTouches;
+ if (touches) for (var i = 0, n = touches.length, touch; i < n; ++i) {
+ if ((touch = touches[i]).identifier === identifier) {
+ return d3_mousePoint(container, touch);
+ }
+ }
+ };
+ d3.behavior.drag = function() {
+ var event = d3_eventDispatch(drag, "drag", "dragstart", "dragend"), origin = null, mousedown = dragstart(d3_noop, d3.mouse, d3_window, "mousemove", "mouseup"), touchstart = dragstart(d3_behavior_dragTouchId, d3.touch, d3_identity, "touchmove", "touchend");
+ function drag() {
+ this.on("mousedown.drag", mousedown).on("touchstart.drag", touchstart);
+ }
+ function dragstart(id, position, subject, move, end) {
+ return function() {
+ var that = this, target = d3.event.target, parent = that.parentNode, dispatch = event.of(that, arguments), dragged = 0, dragId = id(), dragName = ".drag" + (dragId == null ? "" : "-" + dragId), dragOffset, dragSubject = d3.select(subject(target)).on(move + dragName, moved).on(end + dragName, ended), dragRestore = d3_event_dragSuppress(target), position0 = position(parent, dragId);
+ if (origin) {
+ dragOffset = origin.apply(that, arguments);
+ dragOffset = [ dragOffset.x - position0[0], dragOffset.y - position0[1] ];
+ } else {
+ dragOffset = [ 0, 0 ];
+ }
+ dispatch({
+ type: "dragstart"
+ });
+ function moved() {
+ var position1 = position(parent, dragId), dx, dy;
+ if (!position1) return;
+ dx = position1[0] - position0[0];
+ dy = position1[1] - position0[1];
+ dragged |= dx | dy;
+ position0 = position1;
+ dispatch({
+ type: "drag",
+ x: position1[0] + dragOffset[0],
+ y: position1[1] + dragOffset[1],
+ dx: dx,
+ dy: dy
+ });
+ }
+ function ended() {
+ if (!position(parent, dragId)) return;
+ dragSubject.on(move + dragName, null).on(end + dragName, null);
+ dragRestore(dragged && d3.event.target === target);
+ dispatch({
+ type: "dragend"
+ });
+ }
+ };
+ }
+ drag.origin = function(x) {
+ if (!arguments.length) return origin;
+ origin = x;
+ return drag;
+ };
+ return d3.rebind(drag, event, "on");
+ };
+ function d3_behavior_dragTouchId() {
+ return d3.event.changedTouches[0].identifier;
+ }
+ d3.touches = function(container, touches) {
+ if (arguments.length < 2) touches = d3_eventSource().touches;
+ return touches ? d3_array(touches).map(function(touch) {
+ var point = d3_mousePoint(container, touch);
+ point.identifier = touch.identifier;
+ return point;
+ }) : [];
+ };
+ var ε = 1e-6, ε2 = ε * ε, π = Math.PI, τ = 2 * π, τε = τ - ε, halfπ = π / 2, d3_radians = π / 180, d3_degrees = 180 / π;
+ function d3_sgn(x) {
+ return x > 0 ? 1 : x < 0 ? -1 : 0;
+ }
+ function d3_cross2d(a, b, c) {
+ return (b[0] - a[0]) * (c[1] - a[1]) - (b[1] - a[1]) * (c[0] - a[0]);
+ }
+ function d3_acos(x) {
+ return x > 1 ? 0 : x < -1 ? π : Math.acos(x);
+ }
+ function d3_asin(x) {
+ return x > 1 ? halfπ : x < -1 ? -halfπ : Math.asin(x);
+ }
+ function d3_sinh(x) {
+ return ((x = Math.exp(x)) - 1 / x) / 2;
+ }
+ function d3_cosh(x) {
+ return ((x = Math.exp(x)) + 1 / x) / 2;
+ }
+ function d3_tanh(x) {
+ return ((x = Math.exp(2 * x)) - 1) / (x + 1);
+ }
+ function d3_haversin(x) {
+ return (x = Math.sin(x / 2)) * x;
+ }
+ var ρ = Math.SQRT2, ρ2 = 2, ρ4 = 4;
+ d3.interpolateZoom = function(p0, p1) {
+ var ux0 = p0[0], uy0 = p0[1], w0 = p0[2], ux1 = p1[0], uy1 = p1[1], w1 = p1[2];
+ var dx = ux1 - ux0, dy = uy1 - uy0, d2 = dx * dx + dy * dy, d1 = Math.sqrt(d2), b0 = (w1 * w1 - w0 * w0 + ρ4 * d2) / (2 * w0 * ρ2 * d1), b1 = (w1 * w1 - w0 * w0 - ρ4 * d2) / (2 * w1 * ρ2 * d1), r0 = Math.log(Math.sqrt(b0 * b0 + 1) - b0), r1 = Math.log(Math.sqrt(b1 * b1 + 1) - b1), dr = r1 - r0, S = (dr || Math.log(w1 / w0)) / ρ;
+ function interpolate(t) {
+ var s = t * S;
+ if (dr) {
+ var coshr0 = d3_cosh(r0), u = w0 / (ρ2 * d1) * (coshr0 * d3_tanh(ρ * s + r0) - d3_sinh(r0));
+ return [ ux0 + u * dx, uy0 + u * dy, w0 * coshr0 / d3_cosh(ρ * s + r0) ];
+ }
+ return [ ux0 + t * dx, uy0 + t * dy, w0 * Math.exp(ρ * s) ];
+ }
+ interpolate.duration = S * 1e3;
+ return interpolate;
+ };
+ d3.behavior.zoom = function() {
+ var view = {
+ x: 0,
+ y: 0,
+ k: 1
+ }, translate0, center0, center, size = [ 960, 500 ], scaleExtent = d3_behavior_zoomInfinity, duration = 250, zooming = 0, mousedown = "mousedown.zoom", mousemove = "mousemove.zoom", mouseup = "mouseup.zoom", mousewheelTimer, touchstart = "touchstart.zoom", touchtime, event = d3_eventDispatch(zoom, "zoomstart", "zoom", "zoomend"), x0, x1, y0, y1;
+ if (!d3_behavior_zoomWheel) {
+ d3_behavior_zoomWheel = "onwheel" in d3_document ? (d3_behavior_zoomDelta = function() {
+ return -d3.event.deltaY * (d3.event.deltaMode ? 120 : 1);
+ }, "wheel") : "onmousewheel" in d3_document ? (d3_behavior_zoomDelta = function() {
+ return d3.event.wheelDelta;
+ }, "mousewheel") : (d3_behavior_zoomDelta = function() {
+ return -d3.event.detail;
+ }, "MozMousePixelScroll");
+ }
+ function zoom(g) {
+ g.on(mousedown, mousedowned).on(d3_behavior_zoomWheel + ".zoom", mousewheeled).on("dblclick.zoom", dblclicked).on(touchstart, touchstarted);
+ }
+ zoom.event = function(g) {
+ g.each(function() {
+ var dispatch = event.of(this, arguments), view1 = view;
+ if (d3_transitionInheritId) {
+ d3.select(this).transition().each("start.zoom", function() {
+ view = this.__chart__ || {
+ x: 0,
+ y: 0,
+ k: 1
+ };
+ zoomstarted(dispatch);
+ }).tween("zoom:zoom", function() {
+ var dx = size[0], dy = size[1], cx = center0 ? center0[0] : dx / 2, cy = center0 ? center0[1] : dy / 2, i = d3.interpolateZoom([ (cx - view.x) / view.k, (cy - view.y) / view.k, dx / view.k ], [ (cx - view1.x) / view1.k, (cy - view1.y) / view1.k, dx / view1.k ]);
+ return function(t) {
+ var l = i(t), k = dx / l[2];
+ this.__chart__ = view = {
+ x: cx - l[0] * k,
+ y: cy - l[1] * k,
+ k: k
+ };
+ zoomed(dispatch);
+ };
+ }).each("interrupt.zoom", function() {
+ zoomended(dispatch);
+ }).each("end.zoom", function() {
+ zoomended(dispatch);
+ });
+ } else {
+ this.__chart__ = view;
+ zoomstarted(dispatch);
+ zoomed(dispatch);
+ zoomended(dispatch);
+ }
+ });
+ };
+ zoom.translate = function(_) {
+ if (!arguments.length) return [ view.x, view.y ];
+ view = {
+ x: +_[0],
+ y: +_[1],
+ k: view.k
+ };
+ rescale();
+ return zoom;
+ };
+ zoom.scale = function(_) {
+ if (!arguments.length) return view.k;
+ view = {
+ x: view.x,
+ y: view.y,
+ k: +_
+ };
+ rescale();
+ return zoom;
+ };
+ zoom.scaleExtent = function(_) {
+ if (!arguments.length) return scaleExtent;
+ scaleExtent = _ == null ? d3_behavior_zoomInfinity : [ +_[0], +_[1] ];
+ return zoom;
+ };
+ zoom.center = function(_) {
+ if (!arguments.length) return center;
+ center = _ && [ +_[0], +_[1] ];
+ return zoom;
+ };
+ zoom.size = function(_) {
+ if (!arguments.length) return size;
+ size = _ && [ +_[0], +_[1] ];
+ return zoom;
+ };
+ zoom.duration = function(_) {
+ if (!arguments.length) return duration;
+ duration = +_;
+ return zoom;
+ };
+ zoom.x = function(z) {
+ if (!arguments.length) return x1;
+ x1 = z;
+ x0 = z.copy();
+ view = {
+ x: 0,
+ y: 0,
+ k: 1
+ };
+ return zoom;
+ };
+ zoom.y = function(z) {
+ if (!arguments.length) return y1;
+ y1 = z;
+ y0 = z.copy();
+ view = {
+ x: 0,
+ y: 0,
+ k: 1
+ };
+ return zoom;
+ };
+ function location(p) {
+ return [ (p[0] - view.x) / view.k, (p[1] - view.y) / view.k ];
+ }
+ function point(l) {
+ return [ l[0] * view.k + view.x, l[1] * view.k + view.y ];
+ }
+ function scaleTo(s) {
+ view.k = Math.max(scaleExtent[0], Math.min(scaleExtent[1], s));
+ }
+ function translateTo(p, l) {
+ l = point(l);
+ view.x += p[0] - l[0];
+ view.y += p[1] - l[1];
+ }
+ function zoomTo(that, p, l, k) {
+ that.__chart__ = {
+ x: view.x,
+ y: view.y,
+ k: view.k
+ };
+ scaleTo(Math.pow(2, k));
+ translateTo(center0 = p, l);
+ that = d3.select(that);
+ if (duration > 0) that = that.transition().duration(duration);
+ that.call(zoom.event);
+ }
+ function rescale() {
+ if (x1) x1.domain(x0.range().map(function(x) {
+ return (x - view.x) / view.k;
+ }).map(x0.invert));
+ if (y1) y1.domain(y0.range().map(function(y) {
+ return (y - view.y) / view.k;
+ }).map(y0.invert));
+ }
+ function zoomstarted(dispatch) {
+ if (!zooming++) dispatch({
+ type: "zoomstart"
+ });
+ }
+ function zoomed(dispatch) {
+ rescale();
+ dispatch({
+ type: "zoom",
+ scale: view.k,
+ translate: [ view.x, view.y ]
+ });
+ }
+ function zoomended(dispatch) {
+ if (!--zooming) dispatch({
+ type: "zoomend"
+ });
+ center0 = null;
+ }
+ function mousedowned() {
+ var that = this, target = d3.event.target, dispatch = event.of(that, arguments), dragged = 0, subject = d3.select(d3_window(that)).on(mousemove, moved).on(mouseup, ended), location0 = location(d3.mouse(that)), dragRestore = d3_event_dragSuppress(that);
+ d3_selection_interrupt.call(that);
+ zoomstarted(dispatch);
+ function moved() {
+ dragged = 1;
+ translateTo(d3.mouse(that), location0);
+ zoomed(dispatch);
+ }
+ function ended() {
+ subject.on(mousemove, null).on(mouseup, null);
+ dragRestore(dragged && d3.event.target === target);
+ zoomended(dispatch);
+ }
+ }
+ function touchstarted() {
+ var that = this, dispatch = event.of(that, arguments), locations0 = {}, distance0 = 0, scale0, zoomName = ".zoom-" + d3.event.changedTouches[0].identifier, touchmove = "touchmove" + zoomName, touchend = "touchend" + zoomName, targets = [], subject = d3.select(that), dragRestore = d3_event_dragSuppress(that);
+ started();
+ zoomstarted(dispatch);
+ subject.on(mousedown, null).on(touchstart, started);
+ function relocate() {
+ var touches = d3.touches(that);
+ scale0 = view.k;
+ touches.forEach(function(t) {
+ if (t.identifier in locations0) locations0[t.identifier] = location(t);
+ });
+ return touches;
+ }
+ function started() {
+ var target = d3.event.target;
+ d3.select(target).on(touchmove, moved).on(touchend, ended);
+ targets.push(target);
+ var changed = d3.event.changedTouches;
+ for (var i = 0, n = changed.length; i < n; ++i) {
+ locations0[changed[i].identifier] = null;
+ }
+ var touches = relocate(), now = Date.now();
+ if (touches.length === 1) {
+ if (now - touchtime < 500) {
+ var p = touches[0];
+ zoomTo(that, p, locations0[p.identifier], Math.floor(Math.log(view.k) / Math.LN2) + 1);
+ d3_eventPreventDefault();
+ }
+ touchtime = now;
+ } else if (touches.length > 1) {
+ var p = touches[0], q = touches[1], dx = p[0] - q[0], dy = p[1] - q[1];
+ distance0 = dx * dx + dy * dy;
+ }
+ }
+ function moved() {
+ var touches = d3.touches(that), p0, l0, p1, l1;
+ d3_selection_interrupt.call(that);
+ for (var i = 0, n = touches.length; i < n; ++i, l1 = null) {
+ p1 = touches[i];
+ if (l1 = locations0[p1.identifier]) {
+ if (l0) break;
+ p0 = p1, l0 = l1;
+ }
+ }
+ if (l1) {
+ var distance1 = (distance1 = p1[0] - p0[0]) * distance1 + (distance1 = p1[1] - p0[1]) * distance1, scale1 = distance0 && Math.sqrt(distance1 / distance0);
+ p0 = [ (p0[0] + p1[0]) / 2, (p0[1] + p1[1]) / 2 ];
+ l0 = [ (l0[0] + l1[0]) / 2, (l0[1] + l1[1]) / 2 ];
+ scaleTo(scale1 * scale0);
+ }
+ touchtime = null;
+ translateTo(p0, l0);
+ zoomed(dispatch);
+ }
+ function ended() {
+ if (d3.event.touches.length) {
+ var changed = d3.event.changedTouches;
+ for (var i = 0, n = changed.length; i < n; ++i) {
+ delete locations0[changed[i].identifier];
+ }
+ for (var identifier in locations0) {
+ return void relocate();
+ }
+ }
+ d3.selectAll(targets).on(zoomName, null);
+ subject.on(mousedown, mousedowned).on(touchstart, touchstarted);
+ dragRestore();
+ zoomended(dispatch);
+ }
+ }
+ function mousewheeled() {
+ var dispatch = event.of(this, arguments);
+ if (mousewheelTimer) clearTimeout(mousewheelTimer); else translate0 = location(center0 = center || d3.mouse(this)),
+ d3_selection_interrupt.call(this), zoomstarted(dispatch);
+ mousewheelTimer = setTimeout(function() {
+ mousewheelTimer = null;
+ zoomended(dispatch);
+ }, 50);
+ d3_eventPreventDefault();
+ scaleTo(Math.pow(2, d3_behavior_zoomDelta() * .002) * view.k);
+ translateTo(center0, translate0);
+ zoomed(dispatch);
+ }
+ function dblclicked() {
+ var p = d3.mouse(this), k = Math.log(view.k) / Math.LN2;
+ zoomTo(this, p, location(p), d3.event.shiftKey ? Math.ceil(k) - 1 : Math.floor(k) + 1);
+ }
+ return d3.rebind(zoom, event, "on");
+ };
+ var d3_behavior_zoomInfinity = [ 0, Infinity ], d3_behavior_zoomDelta, d3_behavior_zoomWheel;
+ d3.color = d3_color;
+ function d3_color() {}
+ d3_color.prototype.toString = function() {
+ return this.rgb() + "";
+ };
+ d3.hsl = d3_hsl;
+ function d3_hsl(h, s, l) {
+ return this instanceof d3_hsl ? void (this.h = +h, this.s = +s, this.l = +l) : arguments.length < 2 ? h instanceof d3_hsl ? new d3_hsl(h.h, h.s, h.l) : d3_rgb_parse("" + h, d3_rgb_hsl, d3_hsl) : new d3_hsl(h, s, l);
+ }
+ var d3_hslPrototype = d3_hsl.prototype = new d3_color();
+ d3_hslPrototype.brighter = function(k) {
+ k = Math.pow(.7, arguments.length ? k : 1);
+ return new d3_hsl(this.h, this.s, this.l / k);
+ };
+ d3_hslPrototype.darker = function(k) {
+ k = Math.pow(.7, arguments.length ? k : 1);
+ return new d3_hsl(this.h, this.s, k * this.l);
+ };
+ d3_hslPrototype.rgb = function() {
+ return d3_hsl_rgb(this.h, this.s, this.l);
+ };
+ function d3_hsl_rgb(h, s, l) {
+ var m1, m2;
+ h = isNaN(h) ? 0 : (h %= 360) < 0 ? h + 360 : h;
+ s = isNaN(s) ? 0 : s < 0 ? 0 : s > 1 ? 1 : s;
+ l = l < 0 ? 0 : l > 1 ? 1 : l;
+ m2 = l <= .5 ? l * (1 + s) : l + s - l * s;
+ m1 = 2 * l - m2;
+ function v(h) {
+ if (h > 360) h -= 360; else if (h < 0) h += 360;
+ if (h < 60) return m1 + (m2 - m1) * h / 60;
+ if (h < 180) return m2;
+ if (h < 240) return m1 + (m2 - m1) * (240 - h) / 60;
+ return m1;
+ }
+ function vv(h) {
+ return Math.round(v(h) * 255);
+ }
+ return new d3_rgb(vv(h + 120), vv(h), vv(h - 120));
+ }
+ d3.hcl = d3_hcl;
+ function d3_hcl(h, c, l) {
+ return this instanceof d3_hcl ? void (this.h = +h, this.c = +c, this.l = +l) : arguments.length < 2 ? h instanceof d3_hcl ? new d3_hcl(h.h, h.c, h.l) : h instanceof d3_lab ? d3_lab_hcl(h.l, h.a, h.b) : d3_lab_hcl((h = d3_rgb_lab((h = d3.rgb(h)).r, h.g, h.b)).l, h.a, h.b) : new d3_hcl(h, c, l);
+ }
+ var d3_hclPrototype = d3_hcl.prototype = new d3_color();
+ d3_hclPrototype.brighter = function(k) {
+ return new d3_hcl(this.h, this.c, Math.min(100, this.l + d3_lab_K * (arguments.length ? k : 1)));
+ };
+ d3_hclPrototype.darker = function(k) {
+ return new d3_hcl(this.h, this.c, Math.max(0, this.l - d3_lab_K * (arguments.length ? k : 1)));
+ };
+ d3_hclPrototype.rgb = function() {
+ return d3_hcl_lab(this.h, this.c, this.l).rgb();
+ };
+ function d3_hcl_lab(h, c, l) {
+ if (isNaN(h)) h = 0;
+ if (isNaN(c)) c = 0;
+ return new d3_lab(l, Math.cos(h *= d3_radians) * c, Math.sin(h) * c);
+ }
+ d3.lab = d3_lab;
+ function d3_lab(l, a, b) {
+ return this instanceof d3_lab ? void (this.l = +l, this.a = +a, this.b = +b) : arguments.length < 2 ? l instanceof d3_lab ? new d3_lab(l.l, l.a, l.b) : l instanceof d3_hcl ? d3_hcl_lab(l.h, l.c, l.l) : d3_rgb_lab((l = d3_rgb(l)).r, l.g, l.b) : new d3_lab(l, a, b);
+ }
+ var d3_lab_K = 18;
+ var d3_lab_X = .95047, d3_lab_Y = 1, d3_lab_Z = 1.08883;
+ var d3_labPrototype = d3_lab.prototype = new d3_color();
+ d3_labPrototype.brighter = function(k) {
+ return new d3_lab(Math.min(100, this.l + d3_lab_K * (arguments.length ? k : 1)), this.a, this.b);
+ };
+ d3_labPrototype.darker = function(k) {
+ return new d3_lab(Math.max(0, this.l - d3_lab_K * (arguments.length ? k : 1)), this.a, this.b);
+ };
+ d3_labPrototype.rgb = function() {
+ return d3_lab_rgb(this.l, this.a, this.b);
+ };
+ function d3_lab_rgb(l, a, b) {
+ var y = (l + 16) / 116, x = y + a / 500, z = y - b / 200;
+ x = d3_lab_xyz(x) * d3_lab_X;
+ y = d3_lab_xyz(y) * d3_lab_Y;
+ z = d3_lab_xyz(z) * d3_lab_Z;
+ return new d3_rgb(d3_xyz_rgb(3.2404542 * x - 1.5371385 * y - .4985314 * z), d3_xyz_rgb(-.969266 * x + 1.8760108 * y + .041556 * z), d3_xyz_rgb(.0556434 * x - .2040259 * y + 1.0572252 * z));
+ }
+ function d3_lab_hcl(l, a, b) {
+ return l > 0 ? new d3_hcl(Math.atan2(b, a) * d3_degrees, Math.sqrt(a * a + b * b), l) : new d3_hcl(NaN, NaN, l);
+ }
+ function d3_lab_xyz(x) {
+ return x > .206893034 ? x * x * x : (x - 4 / 29) / 7.787037;
+ }
+ function d3_xyz_lab(x) {
+ return x > .008856 ? Math.pow(x, 1 / 3) : 7.787037 * x + 4 / 29;
+ }
+ function d3_xyz_rgb(r) {
+ return Math.round(255 * (r <= .00304 ? 12.92 * r : 1.055 * Math.pow(r, 1 / 2.4) - .055));
+ }
+ d3.rgb = d3_rgb;
+ function d3_rgb(r, g, b) {
+ return this instanceof d3_rgb ? void (this.r = ~~r, this.g = ~~g, this.b = ~~b) : arguments.length < 2 ? r instanceof d3_rgb ? new d3_rgb(r.r, r.g, r.b) : d3_rgb_parse("" + r, d3_rgb, d3_hsl_rgb) : new d3_rgb(r, g, b);
+ }
+ function d3_rgbNumber(value) {
+ return new d3_rgb(value >> 16, value >> 8 & 255, value & 255);
+ }
+ function d3_rgbString(value) {
+ return d3_rgbNumber(value) + "";
+ }
+ var d3_rgbPrototype = d3_rgb.prototype = new d3_color();
+ d3_rgbPrototype.brighter = function(k) {
+ k = Math.pow(.7, arguments.length ? k : 1);
+ var r = this.r, g = this.g, b = this.b, i = 30;
+ if (!r && !g && !b) return new d3_rgb(i, i, i);
+ if (r && r < i) r = i;
+ if (g && g < i) g = i;
+ if (b && b < i) b = i;
+ return new d3_rgb(Math.min(255, r / k), Math.min(255, g / k), Math.min(255, b / k));
+ };
+ d3_rgbPrototype.darker = function(k) {
+ k = Math.pow(.7, arguments.length ? k : 1);
+ return new d3_rgb(k * this.r, k * this.g, k * this.b);
+ };
+ d3_rgbPrototype.hsl = function() {
+ return d3_rgb_hsl(this.r, this.g, this.b);
+ };
+ d3_rgbPrototype.toString = function() {
+ return "#" + d3_rgb_hex(this.r) + d3_rgb_hex(this.g) + d3_rgb_hex(this.b);
+ };
+ function d3_rgb_hex(v) {
+ return v < 16 ? "0" + Math.max(0, v).toString(16) : Math.min(255, v).toString(16);
+ }
+ function d3_rgb_parse(format, rgb, hsl) {
+ var r = 0, g = 0, b = 0, m1, m2, color;
+ m1 = /([a-z]+)\((.*)\)/i.exec(format);
+ if (m1) {
+ m2 = m1[2].split(",");
+ switch (m1[1]) {
+ case "hsl":
+ {
+ return hsl(parseFloat(m2[0]), parseFloat(m2[1]) / 100, parseFloat(m2[2]) / 100);
+ }
+
+ case "rgb":
+ {
+ return rgb(d3_rgb_parseNumber(m2[0]), d3_rgb_parseNumber(m2[1]), d3_rgb_parseNumber(m2[2]));
+ }
+ }
+ }
+ if (color = d3_rgb_names.get(format.toLowerCase())) {
+ return rgb(color.r, color.g, color.b);
+ }
+ if (format != null && format.charAt(0) === "#" && !isNaN(color = parseInt(format.slice(1), 16))) {
+ if (format.length === 4) {
+ r = (color & 3840) >> 4;
+ r = r >> 4 | r;
+ g = color & 240;
+ g = g >> 4 | g;
+ b = color & 15;
+ b = b << 4 | b;
+ } else if (format.length === 7) {
+ r = (color & 16711680) >> 16;
+ g = (color & 65280) >> 8;
+ b = color & 255;
+ }
+ }
+ return rgb(r, g, b);
+ }
+ function d3_rgb_hsl(r, g, b) {
+ var min = Math.min(r /= 255, g /= 255, b /= 255), max = Math.max(r, g, b), d = max - min, h, s, l = (max + min) / 2;
+ if (d) {
+ s = l < .5 ? d / (max + min) : d / (2 - max - min);
+ if (r == max) h = (g - b) / d + (g < b ? 6 : 0); else if (g == max) h = (b - r) / d + 2; else h = (r - g) / d + 4;
+ h *= 60;
+ } else {
+ h = NaN;
+ s = l > 0 && l < 1 ? 0 : h;
+ }
+ return new d3_hsl(h, s, l);
+ }
+ function d3_rgb_lab(r, g, b) {
+ r = d3_rgb_xyz(r);
+ g = d3_rgb_xyz(g);
+ b = d3_rgb_xyz(b);
+ var x = d3_xyz_lab((.4124564 * r + .3575761 * g + .1804375 * b) / d3_lab_X), y = d3_xyz_lab((.2126729 * r + .7151522 * g + .072175 * b) / d3_lab_Y), z = d3_xyz_lab((.0193339 * r + .119192 * g + .9503041 * b) / d3_lab_Z);
+ return d3_lab(116 * y - 16, 500 * (x - y), 200 * (y - z));
+ }
+ function d3_rgb_xyz(r) {
+ return (r /= 255) <= .04045 ? r / 12.92 : Math.pow((r + .055) / 1.055, 2.4);
+ }
+ function d3_rgb_parseNumber(c) {
+ var f = parseFloat(c);
+ return c.charAt(c.length - 1) === "%" ? Math.round(f * 2.55) : f;
+ }
+ var d3_rgb_names = d3.map({
+ aliceblue: 15792383,
+ antiquewhite: 16444375,
+ aqua: 65535,
+ aquamarine: 8388564,
+ azure: 15794175,
+ beige: 16119260,
+ bisque: 16770244,
+ black: 0,
+ blanchedalmond: 16772045,
+ blue: 255,
+ blueviolet: 9055202,
+ brown: 10824234,
+ burlywood: 14596231,
+ cadetblue: 6266528,
+ chartreuse: 8388352,
+ chocolate: 13789470,
+ coral: 16744272,
+ cornflowerblue: 6591981,
+ cornsilk: 16775388,
+ crimson: 14423100,
+ cyan: 65535,
+ darkblue: 139,
+ darkcyan: 35723,
+ darkgoldenrod: 12092939,
+ darkgray: 11119017,
+ darkgreen: 25600,
+ darkgrey: 11119017,
+ darkkhaki: 12433259,
+ darkmagenta: 9109643,
+ darkolivegreen: 5597999,
+ darkorange: 16747520,
+ darkorchid: 10040012,
+ darkred: 9109504,
+ darksalmon: 15308410,
+ darkseagreen: 9419919,
+ darkslateblue: 4734347,
+ darkslategray: 3100495,
+ darkslategrey: 3100495,
+ darkturquoise: 52945,
+ darkviolet: 9699539,
+ deeppink: 16716947,
+ deepskyblue: 49151,
+ dimgray: 6908265,
+ dimgrey: 6908265,
+ dodgerblue: 2003199,
+ firebrick: 11674146,
+ floralwhite: 16775920,
+ forestgreen: 2263842,
+ fuchsia: 16711935,
+ gainsboro: 14474460,
+ ghostwhite: 16316671,
+ gold: 16766720,
+ goldenrod: 14329120,
+ gray: 8421504,
+ green: 32768,
+ greenyellow: 11403055,
+ grey: 8421504,
+ honeydew: 15794160,
+ hotpink: 16738740,
+ indianred: 13458524,
+ indigo: 4915330,
+ ivory: 16777200,
+ khaki: 15787660,
+ lavender: 15132410,
+ lavenderblush: 16773365,
+ lawngreen: 8190976,
+ lemonchiffon: 16775885,
+ lightblue: 11393254,
+ lightcoral: 15761536,
+ lightcyan: 14745599,
+ lightgoldenrodyellow: 16448210,
+ lightgray: 13882323,
+ lightgreen: 9498256,
+ lightgrey: 13882323,
+ lightpink: 16758465,
+ lightsalmon: 16752762,
+ lightseagreen: 2142890,
+ lightskyblue: 8900346,
+ lightslategray: 7833753,
+ lightslategrey: 7833753,
+ lightsteelblue: 11584734,
+ lightyellow: 16777184,
+ lime: 65280,
+ limegreen: 3329330,
+ linen: 16445670,
+ magenta: 16711935,
+ maroon: 8388608,
+ mediumaquamarine: 6737322,
+ mediumblue: 205,
+ mediumorchid: 12211667,
+ mediumpurple: 9662683,
+ mediumseagreen: 3978097,
+ mediumslateblue: 8087790,
+ mediumspringgreen: 64154,
+ mediumturquoise: 4772300,
+ mediumvioletred: 13047173,
+ midnightblue: 1644912,
+ mintcream: 16121850,
+ mistyrose: 16770273,
+ moccasin: 16770229,
+ navajowhite: 16768685,
+ navy: 128,
+ oldlace: 16643558,
+ olive: 8421376,
+ olivedrab: 7048739,
+ orange: 16753920,
+ orangered: 16729344,
+ orchid: 14315734,
+ palegoldenrod: 15657130,
+ palegreen: 10025880,
+ paleturquoise: 11529966,
+ palevioletred: 14381203,
+ papayawhip: 16773077,
+ peachpuff: 16767673,
+ peru: 13468991,
+ pink: 16761035,
+ plum: 14524637,
+ powderblue: 11591910,
+ purple: 8388736,
+ rebeccapurple: 6697881,
+ red: 16711680,
+ rosybrown: 12357519,
+ royalblue: 4286945,
+ saddlebrown: 9127187,
+ salmon: 16416882,
+ sandybrown: 16032864,
+ seagreen: 3050327,
+ seashell: 16774638,
+ sienna: 10506797,
+ silver: 12632256,
+ skyblue: 8900331,
+ slateblue: 6970061,
+ slategray: 7372944,
+ slategrey: 7372944,
+ snow: 16775930,
+ springgreen: 65407,
+ steelblue: 4620980,
+ tan: 13808780,
+ teal: 32896,
+ thistle: 14204888,
+ tomato: 16737095,
+ turquoise: 4251856,
+ violet: 15631086,
+ wheat: 16113331,
+ white: 16777215,
+ whitesmoke: 16119285,
+ yellow: 16776960,
+ yellowgreen: 10145074
+ });
+ d3_rgb_names.forEach(function(key, value) {
+ d3_rgb_names.set(key, d3_rgbNumber(value));
+ });
+ function d3_functor(v) {
+ return typeof v === "function" ? v : function() {
+ return v;
+ };
+ }
+ d3.functor = d3_functor;
+ d3.xhr = d3_xhrType(d3_identity);
+ function d3_xhrType(response) {
+ return function(url, mimeType, callback) {
+ if (arguments.length === 2 && typeof mimeType === "function") callback = mimeType,
+ mimeType = null;
+ return d3_xhr(url, mimeType, response, callback);
+ };
+ }
+ function d3_xhr(url, mimeType, response, callback) {
+ var xhr = {}, dispatch = d3.dispatch("beforesend", "progress", "load", "error"), headers = {}, request = new XMLHttpRequest(), responseType = null;
+ if (this.XDomainRequest && !("withCredentials" in request) && /^(http(s)?:)?\/\//.test(url)) request = new XDomainRequest();
+ "onload" in request ? request.onload = request.onerror = respond : request.onreadystatechange = function() {
+ request.readyState > 3 && respond();
+ };
+ function respond() {
+ var status = request.status, result;
+ if (!status && d3_xhrHasResponse(request) || status >= 200 && status < 300 || status === 304) {
+ try {
+ result = response.call(xhr, request);
+ } catch (e) {
+ dispatch.error.call(xhr, e);
+ return;
+ }
+ dispatch.load.call(xhr, result);
+ } else {
+ dispatch.error.call(xhr, request);
+ }
+ }
+ request.onprogress = function(event) {
+ var o = d3.event;
+ d3.event = event;
+ try {
+ dispatch.progress.call(xhr, request);
+ } finally {
+ d3.event = o;
+ }
+ };
+ xhr.header = function(name, value) {
+ name = (name + "").toLowerCase();
+ if (arguments.length < 2) return headers[name];
+ if (value == null) delete headers[name]; else headers[name] = value + "";
+ return xhr;
+ };
+ xhr.mimeType = function(value) {
+ if (!arguments.length) return mimeType;
+ mimeType = value == null ? null : value + "";
+ return xhr;
+ };
+ xhr.responseType = function(value) {
+ if (!arguments.length) return responseType;
+ responseType = value;
+ return xhr;
+ };
+ xhr.response = function(value) {
+ response = value;
+ return xhr;
+ };
+ [ "get", "post" ].forEach(function(method) {
+ xhr[method] = function() {
+ return xhr.send.apply(xhr, [ method ].concat(d3_array(arguments)));
+ };
+ });
+ xhr.send = function(method, data, callback) {
+ if (arguments.length === 2 && typeof data === "function") callback = data, data = null;
+ request.open(method, url, true);
+ if (mimeType != null && !("accept" in headers)) headers["accept"] = mimeType + ",*/*";
+ if (request.setRequestHeader) for (var name in headers) request.setRequestHeader(name, headers[name]);
+ if (mimeType != null && request.overrideMimeType) request.overrideMimeType(mimeType);
+ if (responseType != null) request.responseType = responseType;
+ if (callback != null) xhr.on("error", callback).on("load", function(request) {
+ callback(null, request);
+ });
+ dispatch.beforesend.call(xhr, request);
+ request.send(data == null ? null : data);
+ return xhr;
+ };
+ xhr.abort = function() {
+ request.abort();
+ return xhr;
+ };
+ d3.rebind(xhr, dispatch, "on");
+ return callback == null ? xhr : xhr.get(d3_xhr_fixCallback(callback));
+ }
+ function d3_xhr_fixCallback(callback) {
+ return callback.length === 1 ? function(error, request) {
+ callback(error == null ? request : null);
+ } : callback;
+ }
+ function d3_xhrHasResponse(request) {
+ var type = request.responseType;
+ return type && type !== "text" ? request.response : request.responseText;
+ }
+ d3.dsv = function(delimiter, mimeType) {
+ var reFormat = new RegExp('["' + delimiter + "\n]"), delimiterCode = delimiter.charCodeAt(0);
+ function dsv(url, row, callback) {
+ if (arguments.length < 3) callback = row, row = null;
+ var xhr = d3_xhr(url, mimeType, row == null ? response : typedResponse(row), callback);
+ xhr.row = function(_) {
+ return arguments.length ? xhr.response((row = _) == null ? response : typedResponse(_)) : row;
+ };
+ return xhr;
+ }
+ function response(request) {
+ return dsv.parse(request.responseText);
+ }
+ function typedResponse(f) {
+ return function(request) {
+ return dsv.parse(request.responseText, f);
+ };
+ }
+ dsv.parse = function(text, f) {
+ var o;
+ return dsv.parseRows(text, function(row, i) {
+ if (o) return o(row, i - 1);
+ var a = new Function("d", "return {" + row.map(function(name, i) {
+ return JSON.stringify(name) + ": d[" + i + "]";
+ }).join(",") + "}");
+ o = f ? function(row, i) {
+ return f(a(row), i);
+ } : a;
+ });
+ };
+ dsv.parseRows = function(text, f) {
+ var EOL = {}, EOF = {}, rows = [], N = text.length, I = 0, n = 0, t, eol;
+ function token() {
+ if (I >= N) return EOF;
+ if (eol) return eol = false, EOL;
+ var j = I;
+ if (text.charCodeAt(j) === 34) {
+ var i = j;
+ while (i++ < N) {
+ if (text.charCodeAt(i) === 34) {
+ if (text.charCodeAt(i + 1) !== 34) break;
+ ++i;
+ }
+ }
+ I = i + 2;
+ var c = text.charCodeAt(i + 1);
+ if (c === 13) {
+ eol = true;
+ if (text.charCodeAt(i + 2) === 10) ++I;
+ } else if (c === 10) {
+ eol = true;
+ }
+ return text.slice(j + 1, i).replace(/""/g, '"');
+ }
+ while (I < N) {
+ var c = text.charCodeAt(I++), k = 1;
+ if (c === 10) eol = true; else if (c === 13) {
+ eol = true;
+ if (text.charCodeAt(I) === 10) ++I, ++k;
+ } else if (c !== delimiterCode) continue;
+ return text.slice(j, I - k);
+ }
+ return text.slice(j);
+ }
+ while ((t = token()) !== EOF) {
+ var a = [];
+ while (t !== EOL && t !== EOF) {
+ a.push(t);
+ t = token();
+ }
+ if (f && (a = f(a, n++)) == null) continue;
+ rows.push(a);
+ }
+ return rows;
+ };
+ dsv.format = function(rows) {
+ if (Array.isArray(rows[0])) return dsv.formatRows(rows);
+ var fieldSet = new d3_Set(), fields = [];
+ rows.forEach(function(row) {
+ for (var field in row) {
+ if (!fieldSet.has(field)) {
+ fields.push(fieldSet.add(field));
+ }
+ }
+ });
+ return [ fields.map(formatValue).join(delimiter) ].concat(rows.map(function(row) {
+ return fields.map(function(field) {
+ return formatValue(row[field]);
+ }).join(delimiter);
+ })).join("\n");
+ };
+ dsv.formatRows = function(rows) {
+ return rows.map(formatRow).join("\n");
+ };
+ function formatRow(row) {
+ return row.map(formatValue).join(delimiter);
+ }
+ function formatValue(text) {
+ return reFormat.test(text) ? '"' + text.replace(/\"/g, '""') + '"' : text;
+ }
+ return dsv;
+ };
+ d3.csv = d3.dsv(",", "text/csv");
+ d3.tsv = d3.dsv(" ", "text/tab-separated-values");
+ var d3_timer_queueHead, d3_timer_queueTail, d3_timer_interval, d3_timer_timeout, d3_timer_active, d3_timer_frame = this[d3_vendorSymbol(this, "requestAnimationFrame")] || function(callback) {
+ setTimeout(callback, 17);
+ };
+ d3.timer = function(callback, delay, then) {
+ var n = arguments.length;
+ if (n < 2) delay = 0;
+ if (n < 3) then = Date.now();
+ var time = then + delay, timer = {
+ c: callback,
+ t: time,
+ f: false,
+ n: null
+ };
+ if (d3_timer_queueTail) d3_timer_queueTail.n = timer; else d3_timer_queueHead = timer;
+ d3_timer_queueTail = timer;
+ if (!d3_timer_interval) {
+ d3_timer_timeout = clearTimeout(d3_timer_timeout);
+ d3_timer_interval = 1;
+ d3_timer_frame(d3_timer_step);
+ }
+ };
+ function d3_timer_step() {
+ var now = d3_timer_mark(), delay = d3_timer_sweep() - now;
+ if (delay > 24) {
+ if (isFinite(delay)) {
+ clearTimeout(d3_timer_timeout);
+ d3_timer_timeout = setTimeout(d3_timer_step, delay);
+ }
+ d3_timer_interval = 0;
+ } else {
+ d3_timer_interval = 1;
+ d3_timer_frame(d3_timer_step);
+ }
+ }
+ d3.timer.flush = function() {
+ d3_timer_mark();
+ d3_timer_sweep();
+ };
+ function d3_timer_mark() {
+ var now = Date.now();
+ d3_timer_active = d3_timer_queueHead;
+ while (d3_timer_active) {
+ if (now >= d3_timer_active.t) d3_timer_active.f = d3_timer_active.c(now - d3_timer_active.t);
+ d3_timer_active = d3_timer_active.n;
+ }
+ return now;
+ }
+ function d3_timer_sweep() {
+ var t0, t1 = d3_timer_queueHead, time = Infinity;
+ while (t1) {
+ if (t1.f) {
+ t1 = t0 ? t0.n = t1.n : d3_timer_queueHead = t1.n;
+ } else {
+ if (t1.t < time) time = t1.t;
+ t1 = (t0 = t1).n;
+ }
+ }
+ d3_timer_queueTail = t0;
+ return time;
+ }
+ function d3_format_precision(x, p) {
+ return p - (x ? Math.ceil(Math.log(x) / Math.LN10) : 1);
+ }
+ d3.round = function(x, n) {
+ return n ? Math.round(x * (n = Math.pow(10, n))) / n : Math.round(x);
+ };
+ var d3_formatPrefixes = [ "y", "z", "a", "f", "p", "n", "µ", "m", "", "k", "M", "G", "T", "P", "E", "Z", "Y" ].map(d3_formatPrefix);
+ d3.formatPrefix = function(value, precision) {
+ var i = 0;
+ if (value) {
+ if (value < 0) value *= -1;
+ if (precision) value = d3.round(value, d3_format_precision(value, precision));
+ i = 1 + Math.floor(1e-12 + Math.log(value) / Math.LN10);
+ i = Math.max(-24, Math.min(24, Math.floor((i - 1) / 3) * 3));
+ }
+ return d3_formatPrefixes[8 + i / 3];
+ };
+ function d3_formatPrefix(d, i) {
+ var k = Math.pow(10, abs(8 - i) * 3);
+ return {
+ scale: i > 8 ? function(d) {
+ return d / k;
+ } : function(d) {
+ return d * k;
+ },
+ symbol: d
+ };
+ }
+ function d3_locale_numberFormat(locale) {
+ var locale_decimal = locale.decimal, locale_thousands = locale.thousands, locale_grouping = locale.grouping, locale_currency = locale.currency, formatGroup = locale_grouping && locale_thousands ? function(value, width) {
+ var i = value.length, t = [], j = 0, g = locale_grouping[0], length = 0;
+ while (i > 0 && g > 0) {
+ if (length + g + 1 > width) g = Math.max(1, width - length);
+ t.push(value.substring(i -= g, i + g));
+ if ((length += g + 1) > width) break;
+ g = locale_grouping[j = (j + 1) % locale_grouping.length];
+ }
+ return t.reverse().join(locale_thousands);
+ } : d3_identity;
+ return function(specifier) {
+ var match = d3_format_re.exec(specifier), fill = match[1] || " ", align = match[2] || ">", sign = match[3] || "-", symbol = match[4] || "", zfill = match[5], width = +match[6], comma = match[7], precision = match[8], type = match[9], scale = 1, prefix = "", suffix = "", integer = false, exponent = true;
+ if (precision) precision = +precision.substring(1);
+ if (zfill || fill === "0" && align === "=") {
+ zfill = fill = "0";
+ align = "=";
+ }
+ switch (type) {
+ case "n":
+ comma = true;
+ type = "g";
+ break;
+
+ case "%":
+ scale = 100;
+ suffix = "%";
+ type = "f";
+ break;
+
+ case "p":
+ scale = 100;
+ suffix = "%";
+ type = "r";
+ break;
+
+ case "b":
+ case "o":
+ case "x":
+ case "X":
+ if (symbol === "#") prefix = "0" + type.toLowerCase();
+
+ case "c":
+ exponent = false;
+
+ case "d":
+ integer = true;
+ precision = 0;
+ break;
+
+ case "s":
+ scale = -1;
+ type = "r";
+ break;
+ }
+ if (symbol === "$") prefix = locale_currency[0], suffix = locale_currency[1];
+ if (type == "r" && !precision) type = "g";
+ if (precision != null) {
+ if (type == "g") precision = Math.max(1, Math.min(21, precision)); else if (type == "e" || type == "f") precision = Math.max(0, Math.min(20, precision));
+ }
+ type = d3_format_types.get(type) || d3_format_typeDefault;
+ var zcomma = zfill && comma;
+ return function(value) {
+ var fullSuffix = suffix;
+ if (integer && value % 1) return "";
+ var negative = value < 0 || value === 0 && 1 / value < 0 ? (value = -value, "-") : sign === "-" ? "" : sign;
+ if (scale < 0) {
+ var unit = d3.formatPrefix(value, precision);
+ value = unit.scale(value);
+ fullSuffix = unit.symbol + suffix;
+ } else {
+ value *= scale;
+ }
+ value = type(value, precision);
+ var i = value.lastIndexOf("."), before, after;
+ if (i < 0) {
+ var j = exponent ? value.lastIndexOf("e") : -1;
+ if (j < 0) before = value, after = ""; else before = value.substring(0, j), after = value.substring(j);
+ } else {
+ before = value.substring(0, i);
+ after = locale_decimal + value.substring(i + 1);
+ }
+ if (!zfill && comma) before = formatGroup(before, Infinity);
+ var length = prefix.length + before.length + after.length + (zcomma ? 0 : negative.length), padding = length < width ? new Array(length = width - length + 1).join(fill) : "";
+ if (zcomma) before = formatGroup(padding + before, padding.length ? width - after.length : Infinity);
+ negative += prefix;
+ value = before + after;
+ return (align === "<" ? negative + value + padding : align === ">" ? padding + negative + value : align === "^" ? padding.substring(0, length >>= 1) + negative + value + padding.substring(length) : negative + (zcomma ? value : padding + value)) + fullSuffix;
+ };
+ };
+ }
+ var d3_format_re = /(?:([^{])?([<>=^]))?([+\- ])?([$#])?(0)?(\d+)?(,)?(\.-?\d+)?([a-z%])?/i;
+ var d3_format_types = d3.map({
+ b: function(x) {
+ return x.toString(2);
+ },
+ c: function(x) {
+ return String.fromCharCode(x);
+ },
+ o: function(x) {
+ return x.toString(8);
+ },
+ x: function(x) {
+ return x.toString(16);
+ },
+ X: function(x) {
+ return x.toString(16).toUpperCase();
+ },
+ g: function(x, p) {
+ return x.toPrecision(p);
+ },
+ e: function(x, p) {
+ return x.toExponential(p);
+ },
+ f: function(x, p) {
+ return x.toFixed(p);
+ },
+ r: function(x, p) {
+ return (x = d3.round(x, d3_format_precision(x, p))).toFixed(Math.max(0, Math.min(20, d3_format_precision(x * (1 + 1e-15), p))));
+ }
+ });
+ function d3_format_typeDefault(x) {
+ return x + "";
+ }
+ var d3_time = d3.time = {}, d3_date = Date;
+ function d3_date_utc() {
+ this._ = new Date(arguments.length > 1 ? Date.UTC.apply(this, arguments) : arguments[0]);
+ }
+ d3_date_utc.prototype = {
+ getDate: function() {
+ return this._.getUTCDate();
+ },
+ getDay: function() {
+ return this._.getUTCDay();
+ },
+ getFullYear: function() {
+ return this._.getUTCFullYear();
+ },
+ getHours: function() {
+ return this._.getUTCHours();
+ },
+ getMilliseconds: function() {
+ return this._.getUTCMilliseconds();
+ },
+ getMinutes: function() {
+ return this._.getUTCMinutes();
+ },
+ getMonth: function() {
+ return this._.getUTCMonth();
+ },
+ getSeconds: function() {
+ return this._.getUTCSeconds();
+ },
+ getTime: function() {
+ return this._.getTime();
+ },
+ getTimezoneOffset: function() {
+ return 0;
+ },
+ valueOf: function() {
+ return this._.valueOf();
+ },
+ setDate: function() {
+ d3_time_prototype.setUTCDate.apply(this._, arguments);
+ },
+ setDay: function() {
+ d3_time_prototype.setUTCDay.apply(this._, arguments);
+ },
+ setFullYear: function() {
+ d3_time_prototype.setUTCFullYear.apply(this._, arguments);
+ },
+ setHours: function() {
+ d3_time_prototype.setUTCHours.apply(this._, arguments);
+ },
+ setMilliseconds: function() {
+ d3_time_prototype.setUTCMilliseconds.apply(this._, arguments);
+ },
+ setMinutes: function() {
+ d3_time_prototype.setUTCMinutes.apply(this._, arguments);
+ },
+ setMonth: function() {
+ d3_time_prototype.setUTCMonth.apply(this._, arguments);
+ },
+ setSeconds: function() {
+ d3_time_prototype.setUTCSeconds.apply(this._, arguments);
+ },
+ setTime: function() {
+ d3_time_prototype.setTime.apply(this._, arguments);
+ }
+ };
+ var d3_time_prototype = Date.prototype;
+ function d3_time_interval(local, step, number) {
+ function round(date) {
+ var d0 = local(date), d1 = offset(d0, 1);
+ return date - d0 < d1 - date ? d0 : d1;
+ }
+ function ceil(date) {
+ step(date = local(new d3_date(date - 1)), 1);
+ return date;
+ }
+ function offset(date, k) {
+ step(date = new d3_date(+date), k);
+ return date;
+ }
+ function range(t0, t1, dt) {
+ var time = ceil(t0), times = [];
+ if (dt > 1) {
+ while (time < t1) {
+ if (!(number(time) % dt)) times.push(new Date(+time));
+ step(time, 1);
+ }
+ } else {
+ while (time < t1) times.push(new Date(+time)), step(time, 1);
+ }
+ return times;
+ }
+ function range_utc(t0, t1, dt) {
+ try {
+ d3_date = d3_date_utc;
+ var utc = new d3_date_utc();
+ utc._ = t0;
+ return range(utc, t1, dt);
+ } finally {
+ d3_date = Date;
+ }
+ }
+ local.floor = local;
+ local.round = round;
+ local.ceil = ceil;
+ local.offset = offset;
+ local.range = range;
+ var utc = local.utc = d3_time_interval_utc(local);
+ utc.floor = utc;
+ utc.round = d3_time_interval_utc(round);
+ utc.ceil = d3_time_interval_utc(ceil);
+ utc.offset = d3_time_interval_utc(offset);
+ utc.range = range_utc;
+ return local;
+ }
+ function d3_time_interval_utc(method) {
+ return function(date, k) {
+ try {
+ d3_date = d3_date_utc;
+ var utc = new d3_date_utc();
+ utc._ = date;
+ return method(utc, k)._;
+ } finally {
+ d3_date = Date;
+ }
+ };
+ }
+ d3_time.year = d3_time_interval(function(date) {
+ date = d3_time.day(date);
+ date.setMonth(0, 1);
+ return date;
+ }, function(date, offset) {
+ date.setFullYear(date.getFullYear() + offset);
+ }, function(date) {
+ return date.getFullYear();
+ });
+ d3_time.years = d3_time.year.range;
+ d3_time.years.utc = d3_time.year.utc.range;
+ d3_time.day = d3_time_interval(function(date) {
+ var day = new d3_date(2e3, 0);
+ day.setFullYear(date.getFullYear(), date.getMonth(), date.getDate());
+ return day;
+ }, function(date, offset) {
+ date.setDate(date.getDate() + offset);
+ }, function(date) {
+ return date.getDate() - 1;
+ });
+ d3_time.days = d3_time.day.range;
+ d3_time.days.utc = d3_time.day.utc.range;
+ d3_time.dayOfYear = function(date) {
+ var year = d3_time.year(date);
+ return Math.floor((date - year - (date.getTimezoneOffset() - year.getTimezoneOffset()) * 6e4) / 864e5);
+ };
+ [ "sunday", "monday", "tuesday", "wednesday", "thursday", "friday", "saturday" ].forEach(function(day, i) {
+ i = 7 - i;
+ var interval = d3_time[day] = d3_time_interval(function(date) {
+ (date = d3_time.day(date)).setDate(date.getDate() - (date.getDay() + i) % 7);
+ return date;
+ }, function(date, offset) {
+ date.setDate(date.getDate() + Math.floor(offset) * 7);
+ }, function(date) {
+ var day = d3_time.year(date).getDay();
+ return Math.floor((d3_time.dayOfYear(date) + (day + i) % 7) / 7) - (day !== i);
+ });
+ d3_time[day + "s"] = interval.range;
+ d3_time[day + "s"].utc = interval.utc.range;
+ d3_time[day + "OfYear"] = function(date) {
+ var day = d3_time.year(date).getDay();
+ return Math.floor((d3_time.dayOfYear(date) + (day + i) % 7) / 7);
+ };
+ });
+ d3_time.week = d3_time.sunday;
+ d3_time.weeks = d3_time.sunday.range;
+ d3_time.weeks.utc = d3_time.sunday.utc.range;
+ d3_time.weekOfYear = d3_time.sundayOfYear;
+ function d3_locale_timeFormat(locale) {
+ var locale_dateTime = locale.dateTime, locale_date = locale.date, locale_time = locale.time, locale_periods = locale.periods, locale_days = locale.days, locale_shortDays = locale.shortDays, locale_months = locale.months, locale_shortMonths = locale.shortMonths;
+ function d3_time_format(template) {
+ var n = template.length;
+ function format(date) {
+ var string = [], i = -1, j = 0, c, p, f;
+ while (++i < n) {
+ if (template.charCodeAt(i) === 37) {
+ string.push(template.slice(j, i));
+ if ((p = d3_time_formatPads[c = template.charAt(++i)]) != null) c = template.charAt(++i);
+ if (f = d3_time_formats[c]) c = f(date, p == null ? c === "e" ? " " : "0" : p);
+ string.push(c);
+ j = i + 1;
+ }
+ }
+ string.push(template.slice(j, i));
+ return string.join("");
+ }
+ format.parse = function(string) {
+ var d = {
+ y: 1900,
+ m: 0,
+ d: 1,
+ H: 0,
+ M: 0,
+ S: 0,
+ L: 0,
+ Z: null
+ }, i = d3_time_parse(d, template, string, 0);
+ if (i != string.length) return null;
+ if ("p" in d) d.H = d.H % 12 + d.p * 12;
+ var localZ = d.Z != null && d3_date !== d3_date_utc, date = new (localZ ? d3_date_utc : d3_date)();
+ if ("j" in d) date.setFullYear(d.y, 0, d.j); else if ("w" in d && ("W" in d || "U" in d)) {
+ date.setFullYear(d.y, 0, 1);
+ date.setFullYear(d.y, 0, "W" in d ? (d.w + 6) % 7 + d.W * 7 - (date.getDay() + 5) % 7 : d.w + d.U * 7 - (date.getDay() + 6) % 7);
+ } else date.setFullYear(d.y, d.m, d.d);
+ date.setHours(d.H + (d.Z / 100 | 0), d.M + d.Z % 100, d.S, d.L);
+ return localZ ? date._ : date;
+ };
+ format.toString = function() {
+ return template;
+ };
+ return format;
+ }
+ function d3_time_parse(date, template, string, j) {
+ var c, p, t, i = 0, n = template.length, m = string.length;
+ while (i < n) {
+ if (j >= m) return -1;
+ c = template.charCodeAt(i++);
+ if (c === 37) {
+ t = template.charAt(i++);
+ p = d3_time_parsers[t in d3_time_formatPads ? template.charAt(i++) : t];
+ if (!p || (j = p(date, string, j)) < 0) return -1;
+ } else if (c != string.charCodeAt(j++)) {
+ return -1;
+ }
+ }
+ return j;
+ }
+ d3_time_format.utc = function(template) {
+ var local = d3_time_format(template);
+ function format(date) {
+ try {
+ d3_date = d3_date_utc;
+ var utc = new d3_date();
+ utc._ = date;
+ return local(utc);
+ } finally {
+ d3_date = Date;
+ }
+ }
+ format.parse = function(string) {
+ try {
+ d3_date = d3_date_utc;
+ var date = local.parse(string);
+ return date && date._;
+ } finally {
+ d3_date = Date;
+ }
+ };
+ format.toString = local.toString;
+ return format;
+ };
+ d3_time_format.multi = d3_time_format.utc.multi = d3_time_formatMulti;
+ var d3_time_periodLookup = d3.map(), d3_time_dayRe = d3_time_formatRe(locale_days), d3_time_dayLookup = d3_time_formatLookup(locale_days), d3_time_dayAbbrevRe = d3_time_formatRe(locale_shortDays), d3_time_dayAbbrevLookup = d3_time_formatLookup(locale_shortDays), d3_time_monthRe = d3_time_formatRe(locale_months), d3_time_monthLookup = d3_time_formatLookup(locale_months), d3_time_monthAbbrevRe = d3_time_formatRe(locale_shortMonths), d3_time_monthAbbrevLookup = d3_time_formatLookup(locale_shortMonths);
+ locale_periods.forEach(function(p, i) {
+ d3_time_periodLookup.set(p.toLowerCase(), i);
+ });
+ var d3_time_formats = {
+ a: function(d) {
+ return locale_shortDays[d.getDay()];
+ },
+ A: function(d) {
+ return locale_days[d.getDay()];
+ },
+ b: function(d) {
+ return locale_shortMonths[d.getMonth()];
+ },
+ B: function(d) {
+ return locale_months[d.getMonth()];
+ },
+ c: d3_time_format(locale_dateTime),
+ d: function(d, p) {
+ return d3_time_formatPad(d.getDate(), p, 2);
+ },
+ e: function(d, p) {
+ return d3_time_formatPad(d.getDate(), p, 2);
+ },
+ H: function(d, p) {
+ return d3_time_formatPad(d.getHours(), p, 2);
+ },
+ I: function(d, p) {
+ return d3_time_formatPad(d.getHours() % 12 || 12, p, 2);
+ },
+ j: function(d, p) {
+ return d3_time_formatPad(1 + d3_time.dayOfYear(d), p, 3);
+ },
+ L: function(d, p) {
+ return d3_time_formatPad(d.getMilliseconds(), p, 3);
+ },
+ m: function(d, p) {
+ return d3_time_formatPad(d.getMonth() + 1, p, 2);
+ },
+ M: function(d, p) {
+ return d3_time_formatPad(d.getMinutes(), p, 2);
+ },
+ p: function(d) {
+ return locale_periods[+(d.getHours() >= 12)];
+ },
+ S: function(d, p) {
+ return d3_time_formatPad(d.getSeconds(), p, 2);
+ },
+ U: function(d, p) {
+ return d3_time_formatPad(d3_time.sundayOfYear(d), p, 2);
+ },
+ w: function(d) {
+ return d.getDay();
+ },
+ W: function(d, p) {
+ return d3_time_formatPad(d3_time.mondayOfYear(d), p, 2);
+ },
+ x: d3_time_format(locale_date),
+ X: d3_time_format(locale_time),
+ y: function(d, p) {
+ return d3_time_formatPad(d.getFullYear() % 100, p, 2);
+ },
+ Y: function(d, p) {
+ return d3_time_formatPad(d.getFullYear() % 1e4, p, 4);
+ },
+ Z: d3_time_zone,
+ "%": function() {
+ return "%";
+ }
+ };
+ var d3_time_parsers = {
+ a: d3_time_parseWeekdayAbbrev,
+ A: d3_time_parseWeekday,
+ b: d3_time_parseMonthAbbrev,
+ B: d3_time_parseMonth,
+ c: d3_time_parseLocaleFull,
+ d: d3_time_parseDay,
+ e: d3_time_parseDay,
+ H: d3_time_parseHour24,
+ I: d3_time_parseHour24,
+ j: d3_time_parseDayOfYear,
+ L: d3_time_parseMilliseconds,
+ m: d3_time_parseMonthNumber,
+ M: d3_time_parseMinutes,
+ p: d3_time_parseAmPm,
+ S: d3_time_parseSeconds,
+ U: d3_time_parseWeekNumberSunday,
+ w: d3_time_parseWeekdayNumber,
+ W: d3_time_parseWeekNumberMonday,
+ x: d3_time_parseLocaleDate,
+ X: d3_time_parseLocaleTime,
+ y: d3_time_parseYear,
+ Y: d3_time_parseFullYear,
+ Z: d3_time_parseZone,
+ "%": d3_time_parseLiteralPercent
+ };
+ function d3_time_parseWeekdayAbbrev(date, string, i) {
+ d3_time_dayAbbrevRe.lastIndex = 0;
+ var n = d3_time_dayAbbrevRe.exec(string.slice(i));
+ return n ? (date.w = d3_time_dayAbbrevLookup.get(n[0].toLowerCase()), i + n[0].length) : -1;
+ }
+ function d3_time_parseWeekday(date, string, i) {
+ d3_time_dayRe.lastIndex = 0;
+ var n = d3_time_dayRe.exec(string.slice(i));
+ return n ? (date.w = d3_time_dayLookup.get(n[0].toLowerCase()), i + n[0].length) : -1;
+ }
+ function d3_time_parseMonthAbbrev(date, string, i) {
+ d3_time_monthAbbrevRe.lastIndex = 0;
+ var n = d3_time_monthAbbrevRe.exec(string.slice(i));
+ return n ? (date.m = d3_time_monthAbbrevLookup.get(n[0].toLowerCase()), i + n[0].length) : -1;
+ }
+ function d3_time_parseMonth(date, string, i) {
+ d3_time_monthRe.lastIndex = 0;
+ var n = d3_time_monthRe.exec(string.slice(i));
+ return n ? (date.m = d3_time_monthLookup.get(n[0].toLowerCase()), i + n[0].length) : -1;
+ }
+ function d3_time_parseLocaleFull(date, string, i) {
+ return d3_time_parse(date, d3_time_formats.c.toString(), string, i);
+ }
+ function d3_time_parseLocaleDate(date, string, i) {
+ return d3_time_parse(date, d3_time_formats.x.toString(), string, i);
+ }
+ function d3_time_parseLocaleTime(date, string, i) {
+ return d3_time_parse(date, d3_time_formats.X.toString(), string, i);
+ }
+ function d3_time_parseAmPm(date, string, i) {
+ var n = d3_time_periodLookup.get(string.slice(i, i += 2).toLowerCase());
+ return n == null ? -1 : (date.p = n, i);
+ }
+ return d3_time_format;
+ }
+ var d3_time_formatPads = {
+ "-": "",
+ _: " ",
+ "0": "0"
+ }, d3_time_numberRe = /^\s*\d+/, d3_time_percentRe = /^%/;
+ function d3_time_formatPad(value, fill, width) {
+ var sign = value < 0 ? "-" : "", string = (sign ? -value : value) + "", length = string.length;
+ return sign + (length < width ? new Array(width - length + 1).join(fill) + string : string);
+ }
+ function d3_time_formatRe(names) {
+ return new RegExp("^(?:" + names.map(d3.requote).join("|") + ")", "i");
+ }
+ function d3_time_formatLookup(names) {
+ var map = new d3_Map(), i = -1, n = names.length;
+ while (++i < n) map.set(names[i].toLowerCase(), i);
+ return map;
+ }
+ function d3_time_parseWeekdayNumber(date, string, i) {
+ d3_time_numberRe.lastIndex = 0;
+ var n = d3_time_numberRe.exec(string.slice(i, i + 1));
+ return n ? (date.w = +n[0], i + n[0].length) : -1;
+ }
+ function d3_time_parseWeekNumberSunday(date, string, i) {
+ d3_time_numberRe.lastIndex = 0;
+ var n = d3_time_numberRe.exec(string.slice(i));
+ return n ? (date.U = +n[0], i + n[0].length) : -1;
+ }
+ function d3_time_parseWeekNumberMonday(date, string, i) {
+ d3_time_numberRe.lastIndex = 0;
+ var n = d3_time_numberRe.exec(string.slice(i));
+ return n ? (date.W = +n[0], i + n[0].length) : -1;
+ }
+ function d3_time_parseFullYear(date, string, i) {
+ d3_time_numberRe.lastIndex = 0;
+ var n = d3_time_numberRe.exec(string.slice(i, i + 4));
+ return n ? (date.y = +n[0], i + n[0].length) : -1;
+ }
+ function d3_time_parseYear(date, string, i) {
+ d3_time_numberRe.lastIndex = 0;
+ var n = d3_time_numberRe.exec(string.slice(i, i + 2));
+ return n ? (date.y = d3_time_expandYear(+n[0]), i + n[0].length) : -1;
+ }
+ function d3_time_parseZone(date, string, i) {
+ return /^[+-]\d{4}$/.test(string = string.slice(i, i + 5)) ? (date.Z = -string,
+ i + 5) : -1;
+ }
+ function d3_time_expandYear(d) {
+ return d + (d > 68 ? 1900 : 2e3);
+ }
+ function d3_time_parseMonthNumber(date, string, i) {
+ d3_time_numberRe.lastIndex = 0;
+ var n = d3_time_numberRe.exec(string.slice(i, i + 2));
+ return n ? (date.m = n[0] - 1, i + n[0].length) : -1;
+ }
+ function d3_time_parseDay(date, string, i) {
+ d3_time_numberRe.lastIndex = 0;
+ var n = d3_time_numberRe.exec(string.slice(i, i + 2));
+ return n ? (date.d = +n[0], i + n[0].length) : -1;
+ }
+ function d3_time_parseDayOfYear(date, string, i) {
+ d3_time_numberRe.lastIndex = 0;
+ var n = d3_time_numberRe.exec(string.slice(i, i + 3));
+ return n ? (date.j = +n[0], i + n[0].length) : -1;
+ }
+ function d3_time_parseHour24(date, string, i) {
+ d3_time_numberRe.lastIndex = 0;
+ var n = d3_time_numberRe.exec(string.slice(i, i + 2));
+ return n ? (date.H = +n[0], i + n[0].length) : -1;
+ }
+ function d3_time_parseMinutes(date, string, i) {
+ d3_time_numberRe.lastIndex = 0;
+ var n = d3_time_numberRe.exec(string.slice(i, i + 2));
+ return n ? (date.M = +n[0], i + n[0].length) : -1;
+ }
+ function d3_time_parseSeconds(date, string, i) {
+ d3_time_numberRe.lastIndex = 0;
+ var n = d3_time_numberRe.exec(string.slice(i, i + 2));
+ return n ? (date.S = +n[0], i + n[0].length) : -1;
+ }
+ function d3_time_parseMilliseconds(date, string, i) {
+ d3_time_numberRe.lastIndex = 0;
+ var n = d3_time_numberRe.exec(string.slice(i, i + 3));
+ return n ? (date.L = +n[0], i + n[0].length) : -1;
+ }
+ function d3_time_zone(d) {
+ var z = d.getTimezoneOffset(), zs = z > 0 ? "-" : "+", zh = abs(z) / 60 | 0, zm = abs(z) % 60;
+ return zs + d3_time_formatPad(zh, "0", 2) + d3_time_formatPad(zm, "0", 2);
+ }
+ function d3_time_parseLiteralPercent(date, string, i) {
+ d3_time_percentRe.lastIndex = 0;
+ var n = d3_time_percentRe.exec(string.slice(i, i + 1));
+ return n ? i + n[0].length : -1;
+ }
+ function d3_time_formatMulti(formats) {
+ var n = formats.length, i = -1;
+ while (++i < n) formats[i][0] = this(formats[i][0]);
+ return function(date) {
+ var i = 0, f = formats[i];
+ while (!f[1](date)) f = formats[++i];
+ return f[0](date);
+ };
+ }
+ d3.locale = function(locale) {
+ return {
+ numberFormat: d3_locale_numberFormat(locale),
+ timeFormat: d3_locale_timeFormat(locale)
+ };
+ };
+ var d3_locale_enUS = d3.locale({
+ decimal: ".",
+ thousands: ",",
+ grouping: [ 3 ],
+ currency: [ "$", "" ],
+ dateTime: "%a %b %e %X %Y",
+ date: "%m/%d/%Y",
+ time: "%H:%M:%S",
+ periods: [ "AM", "PM" ],
+ days: [ "Sunday", "Monday", "Tuesday", "Wednesday", "Thursday", "Friday", "Saturday" ],
+ shortDays: [ "Sun", "Mon", "Tue", "Wed", "Thu", "Fri", "Sat" ],
+ months: [ "January", "February", "March", "April", "May", "June", "July", "August", "September", "October", "November", "December" ],
+ shortMonths: [ "Jan", "Feb", "Mar", "Apr", "May", "Jun", "Jul", "Aug", "Sep", "Oct", "Nov", "Dec" ]
+ });
+ d3.format = d3_locale_enUS.numberFormat;
+ d3.geo = {};
+ function d3_adder() {}
+ d3_adder.prototype = {
+ s: 0,
+ t: 0,
+ add: function(y) {
+ d3_adderSum(y, this.t, d3_adderTemp);
+ d3_adderSum(d3_adderTemp.s, this.s, this);
+ if (this.s) this.t += d3_adderTemp.t; else this.s = d3_adderTemp.t;
+ },
+ reset: function() {
+ this.s = this.t = 0;
+ },
+ valueOf: function() {
+ return this.s;
+ }
+ };
+ var d3_adderTemp = new d3_adder();
+ function d3_adderSum(a, b, o) {
+ var x = o.s = a + b, bv = x - a, av = x - bv;
+ o.t = a - av + (b - bv);
+ }
+ d3.geo.stream = function(object, listener) {
+ if (object && d3_geo_streamObjectType.hasOwnProperty(object.type)) {
+ d3_geo_streamObjectType[object.type](object, listener);
+ } else {
+ d3_geo_streamGeometry(object, listener);
+ }
+ };
+ function d3_geo_streamGeometry(geometry, listener) {
+ if (geometry && d3_geo_streamGeometryType.hasOwnProperty(geometry.type)) {
+ d3_geo_streamGeometryType[geometry.type](geometry, listener);
+ }
+ }
+ var d3_geo_streamObjectType = {
+ Feature: function(feature, listener) {
+ d3_geo_streamGeometry(feature.geometry, listener);
+ },
+ FeatureCollection: function(object, listener) {
+ var features = object.features, i = -1, n = features.length;
+ while (++i < n) d3_geo_streamGeometry(features[i].geometry, listener);
+ }
+ };
+ var d3_geo_streamGeometryType = {
+ Sphere: function(object, listener) {
+ listener.sphere();
+ },
+ Point: function(object, listener) {
+ object = object.coordinates;
+ listener.point(object[0], object[1], object[2]);
+ },
+ MultiPoint: function(object, listener) {
+ var coordinates = object.coordinates, i = -1, n = coordinates.length;
+ while (++i < n) object = coordinates[i], listener.point(object[0], object[1], object[2]);
+ },
+ LineString: function(object, listener) {
+ d3_geo_streamLine(object.coordinates, listener, 0);
+ },
+ MultiLineString: function(object, listener) {
+ var coordinates = object.coordinates, i = -1, n = coordinates.length;
+ while (++i < n) d3_geo_streamLine(coordinates[i], listener, 0);
+ },
+ Polygon: function(object, listener) {
+ d3_geo_streamPolygon(object.coordinates, listener);
+ },
+ MultiPolygon: function(object, listener) {
+ var coordinates = object.coordinates, i = -1, n = coordinates.length;
+ while (++i < n) d3_geo_streamPolygon(coordinates[i], listener);
+ },
+ GeometryCollection: function(object, listener) {
+ var geometries = object.geometries, i = -1, n = geometries.length;
+ while (++i < n) d3_geo_streamGeometry(geometries[i], listener);
+ }
+ };
+ function d3_geo_streamLine(coordinates, listener, closed) {
+ var i = -1, n = coordinates.length - closed, coordinate;
+ listener.lineStart();
+ while (++i < n) coordinate = coordinates[i], listener.point(coordinate[0], coordinate[1], coordinate[2]);
+ listener.lineEnd();
+ }
+ function d3_geo_streamPolygon(coordinates, listener) {
+ var i = -1, n = coordinates.length;
+ listener.polygonStart();
+ while (++i < n) d3_geo_streamLine(coordinates[i], listener, 1);
+ listener.polygonEnd();
+ }
+ d3.geo.area = function(object) {
+ d3_geo_areaSum = 0;
+ d3.geo.stream(object, d3_geo_area);
+ return d3_geo_areaSum;
+ };
+ var d3_geo_areaSum, d3_geo_areaRingSum = new d3_adder();
+ var d3_geo_area = {
+ sphere: function() {
+ d3_geo_areaSum += 4 * π;
+ },
+ point: d3_noop,
+ lineStart: d3_noop,
+ lineEnd: d3_noop,
+ polygonStart: function() {
+ d3_geo_areaRingSum.reset();
+ d3_geo_area.lineStart = d3_geo_areaRingStart;
+ },
+ polygonEnd: function() {
+ var area = 2 * d3_geo_areaRingSum;
+ d3_geo_areaSum += area < 0 ? 4 * π + area : area;
+ d3_geo_area.lineStart = d3_geo_area.lineEnd = d3_geo_area.point = d3_noop;
+ }
+ };
+ function d3_geo_areaRingStart() {
+ var λ00, φ00, λ0, cosφ0, sinφ0;
+ d3_geo_area.point = function(λ, φ) {
+ d3_geo_area.point = nextPoint;
+ λ0 = (λ00 = λ) * d3_radians, cosφ0 = Math.cos(φ = (φ00 = φ) * d3_radians / 2 + π / 4),
+ sinφ0 = Math.sin(φ);
+ };
+ function nextPoint(λ, φ) {
+ λ *= d3_radians;
+ φ = φ * d3_radians / 2 + π / 4;
+ var dλ = λ - λ0, sdλ = dλ >= 0 ? 1 : -1, adλ = sdλ * dλ, cosφ = Math.cos(φ), sinφ = Math.sin(φ), k = sinφ0 * sinφ, u = cosφ0 * cosφ + k * Math.cos(adλ), v = k * sdλ * Math.sin(adλ);
+ d3_geo_areaRingSum.add(Math.atan2(v, u));
+ λ0 = λ, cosφ0 = cosφ, sinφ0 = sinφ;
+ }
+ d3_geo_area.lineEnd = function() {
+ nextPoint(λ00, φ00);
+ };
+ }
+ function d3_geo_cartesian(spherical) {
+ var λ = spherical[0], φ = spherical[1], cosφ = Math.cos(φ);
+ return [ cosφ * Math.cos(λ), cosφ * Math.sin(λ), Math.sin(φ) ];
+ }
+ function d3_geo_cartesianDot(a, b) {
+ return a[0] * b[0] + a[1] * b[1] + a[2] * b[2];
+ }
+ function d3_geo_cartesianCross(a, b) {
+ return [ a[1] * b[2] - a[2] * b[1], a[2] * b[0] - a[0] * b[2], a[0] * b[1] - a[1] * b[0] ];
+ }
+ function d3_geo_cartesianAdd(a, b) {
+ a[0] += b[0];
+ a[1] += b[1];
+ a[2] += b[2];
+ }
+ function d3_geo_cartesianScale(vector, k) {
+ return [ vector[0] * k, vector[1] * k, vector[2] * k ];
+ }
+ function d3_geo_cartesianNormalize(d) {
+ var l = Math.sqrt(d[0] * d[0] + d[1] * d[1] + d[2] * d[2]);
+ d[0] /= l;
+ d[1] /= l;
+ d[2] /= l;
+ }
+ function d3_geo_spherical(cartesian) {
+ return [ Math.atan2(cartesian[1], cartesian[0]), d3_asin(cartesian[2]) ];
+ }
+ function d3_geo_sphericalEqual(a, b) {
+ return abs(a[0] - b[0]) < ε && abs(a[1] - b[1]) < ε;
+ }
+ d3.geo.bounds = function() {
+ var λ0, φ0, λ1, φ1, λ_, λ__, φ__, p0, dλSum, ranges, range;
+ var bound = {
+ point: point,
+ lineStart: lineStart,
+ lineEnd: lineEnd,
+ polygonStart: function() {
+ bound.point = ringPoint;
+ bound.lineStart = ringStart;
+ bound.lineEnd = ringEnd;
+ dλSum = 0;
+ d3_geo_area.polygonStart();
+ },
+ polygonEnd: function() {
+ d3_geo_area.polygonEnd();
+ bound.point = point;
+ bound.lineStart = lineStart;
+ bound.lineEnd = lineEnd;
+ if (d3_geo_areaRingSum < 0) λ0 = -(λ1 = 180), φ0 = -(φ1 = 90); else if (dλSum > ε) φ1 = 90; else if (dλSum < -ε) φ0 = -90;
+ range[0] = λ0, range[1] = λ1;
+ }
+ };
+ function point(λ, φ) {
+ ranges.push(range = [ λ0 = λ, λ1 = λ ]);
+ if (φ < φ0) φ0 = φ;
+ if (φ > φ1) φ1 = φ;
+ }
+ function linePoint(λ, φ) {
+ var p = d3_geo_cartesian([ λ * d3_radians, φ * d3_radians ]);
+ if (p0) {
+ var normal = d3_geo_cartesianCross(p0, p), equatorial = [ normal[1], -normal[0], 0 ], inflection = d3_geo_cartesianCross(equatorial, normal);
+ d3_geo_cartesianNormalize(inflection);
+ inflection = d3_geo_spherical(inflection);
+ var dλ = λ - λ_, s = dλ > 0 ? 1 : -1, λi = inflection[0] * d3_degrees * s, antimeridian = abs(dλ) > 180;
+ if (antimeridian ^ (s * λ_ < λi && λi < s * λ)) {
+ var φi = inflection[1] * d3_degrees;
+ if (φi > φ1) φ1 = φi;
+ } else if (λi = (λi + 360) % 360 - 180, antimeridian ^ (s * λ_ < λi && λi < s * λ)) {
+ var φi = -inflection[1] * d3_degrees;
+ if (φi < φ0) φ0 = φi;
+ } else {
+ if (φ < φ0) φ0 = φ;
+ if (φ > φ1) φ1 = φ;
+ }
+ if (antimeridian) {
+ if (λ < λ_) {
+ if (angle(λ0, λ) > angle(λ0, λ1)) λ1 = λ;
+ } else {
+ if (angle(λ, λ1) > angle(λ0, λ1)) λ0 = λ;
+ }
+ } else {
+ if (λ1 >= λ0) {
+ if (λ < λ0) λ0 = λ;
+ if (λ > λ1) λ1 = λ;
+ } else {
+ if (λ > λ_) {
+ if (angle(λ0, λ) > angle(λ0, λ1)) λ1 = λ;
+ } else {
+ if (angle(λ, λ1) > angle(λ0, λ1)) λ0 = λ;
+ }
+ }
+ }
+ } else {
+ point(λ, φ);
+ }
+ p0 = p, λ_ = λ;
+ }
+ function lineStart() {
+ bound.point = linePoint;
+ }
+ function lineEnd() {
+ range[0] = λ0, range[1] = λ1;
+ bound.point = point;
+ p0 = null;
+ }
+ function ringPoint(λ, φ) {
+ if (p0) {
+ var dλ = λ - λ_;
+ dλSum += abs(dλ) > 180 ? dλ + (dλ > 0 ? 360 : -360) : dλ;
+ } else λ__ = λ, φ__ = φ;
+ d3_geo_area.point(λ, φ);
+ linePoint(λ, φ);
+ }
+ function ringStart() {
+ d3_geo_area.lineStart();
+ }
+ function ringEnd() {
+ ringPoint(λ__, φ__);
+ d3_geo_area.lineEnd();
+ if (abs(dλSum) > ε) λ0 = -(λ1 = 180);
+ range[0] = λ0, range[1] = λ1;
+ p0 = null;
+ }
+ function angle(λ0, λ1) {
+ return (λ1 -= λ0) < 0 ? λ1 + 360 : λ1;
+ }
+ function compareRanges(a, b) {
+ return a[0] - b[0];
+ }
+ function withinRange(x, range) {
+ return range[0] <= range[1] ? range[0] <= x && x <= range[1] : x < range[0] || range[1] < x;
+ }
+ return function(feature) {
+ φ1 = λ1 = -(λ0 = φ0 = Infinity);
+ ranges = [];
+ d3.geo.stream(feature, bound);
+ var n = ranges.length;
+ if (n) {
+ ranges.sort(compareRanges);
+ for (var i = 1, a = ranges[0], b, merged = [ a ]; i < n; ++i) {
+ b = ranges[i];
+ if (withinRange(b[0], a) || withinRange(b[1], a)) {
+ if (angle(a[0], b[1]) > angle(a[0], a[1])) a[1] = b[1];
+ if (angle(b[0], a[1]) > angle(a[0], a[1])) a[0] = b[0];
+ } else {
+ merged.push(a = b);
+ }
+ }
+ var best = -Infinity, dλ;
+ for (var n = merged.length - 1, i = 0, a = merged[n], b; i <= n; a = b, ++i) {
+ b = merged[i];
+ if ((dλ = angle(a[1], b[0])) > best) best = dλ, λ0 = b[0], λ1 = a[1];
+ }
+ }
+ ranges = range = null;
+ return λ0 === Infinity || φ0 === Infinity ? [ [ NaN, NaN ], [ NaN, NaN ] ] : [ [ λ0, φ0 ], [ λ1, φ1 ] ];
+ };
+ }();
+ d3.geo.centroid = function(object) {
+ d3_geo_centroidW0 = d3_geo_centroidW1 = d3_geo_centroidX0 = d3_geo_centroidY0 = d3_geo_centroidZ0 = d3_geo_centroidX1 = d3_geo_centroidY1 = d3_geo_centroidZ1 = d3_geo_centroidX2 = d3_geo_centroidY2 = d3_geo_centroidZ2 = 0;
+ d3.geo.stream(object, d3_geo_centroid);
+ var x = d3_geo_centroidX2, y = d3_geo_centroidY2, z = d3_geo_centroidZ2, m = x * x + y * y + z * z;
+ if (m < ε2) {
+ x = d3_geo_centroidX1, y = d3_geo_centroidY1, z = d3_geo_centroidZ1;
+ if (d3_geo_centroidW1 < ε) x = d3_geo_centroidX0, y = d3_geo_centroidY0, z = d3_geo_centroidZ0;
+ m = x * x + y * y + z * z;
+ if (m < ε2) return [ NaN, NaN ];
+ }
+ return [ Math.atan2(y, x) * d3_degrees, d3_asin(z / Math.sqrt(m)) * d3_degrees ];
+ };
+ var d3_geo_centroidW0, d3_geo_centroidW1, d3_geo_centroidX0, d3_geo_centroidY0, d3_geo_centroidZ0, d3_geo_centroidX1, d3_geo_centroidY1, d3_geo_centroidZ1, d3_geo_centroidX2, d3_geo_centroidY2, d3_geo_centroidZ2;
+ var d3_geo_centroid = {
+ sphere: d3_noop,
+ point: d3_geo_centroidPoint,
+ lineStart: d3_geo_centroidLineStart,
+ lineEnd: d3_geo_centroidLineEnd,
+ polygonStart: function() {
+ d3_geo_centroid.lineStart = d3_geo_centroidRingStart;
+ },
+ polygonEnd: function() {
+ d3_geo_centroid.lineStart = d3_geo_centroidLineStart;
+ }
+ };
+ function d3_geo_centroidPoint(λ, φ) {
+ λ *= d3_radians;
+ var cosφ = Math.cos(φ *= d3_radians);
+ d3_geo_centroidPointXYZ(cosφ * Math.cos(λ), cosφ * Math.sin(λ), Math.sin(φ));
+ }
+ function d3_geo_centroidPointXYZ(x, y, z) {
+ ++d3_geo_centroidW0;
+ d3_geo_centroidX0 += (x - d3_geo_centroidX0) / d3_geo_centroidW0;
+ d3_geo_centroidY0 += (y - d3_geo_centroidY0) / d3_geo_centroidW0;
+ d3_geo_centroidZ0 += (z - d3_geo_centroidZ0) / d3_geo_centroidW0;
+ }
+ function d3_geo_centroidLineStart() {
+ var x0, y0, z0;
+ d3_geo_centroid.point = function(λ, φ) {
+ λ *= d3_radians;
+ var cosφ = Math.cos(φ *= d3_radians);
+ x0 = cosφ * Math.cos(λ);
+ y0 = cosφ * Math.sin(λ);
+ z0 = Math.sin(φ);
+ d3_geo_centroid.point = nextPoint;
+ d3_geo_centroidPointXYZ(x0, y0, z0);
+ };
+ function nextPoint(λ, φ) {
+ λ *= d3_radians;
+ var cosφ = Math.cos(φ *= d3_radians), x = cosφ * Math.cos(λ), y = cosφ * Math.sin(λ), z = Math.sin(φ), w = Math.atan2(Math.sqrt((w = y0 * z - z0 * y) * w + (w = z0 * x - x0 * z) * w + (w = x0 * y - y0 * x) * w), x0 * x + y0 * y + z0 * z);
+ d3_geo_centroidW1 += w;
+ d3_geo_centroidX1 += w * (x0 + (x0 = x));
+ d3_geo_centroidY1 += w * (y0 + (y0 = y));
+ d3_geo_centroidZ1 += w * (z0 + (z0 = z));
+ d3_geo_centroidPointXYZ(x0, y0, z0);
+ }
+ }
+ function d3_geo_centroidLineEnd() {
+ d3_geo_centroid.point = d3_geo_centroidPoint;
+ }
+ function d3_geo_centroidRingStart() {
+ var λ00, φ00, x0, y0, z0;
+ d3_geo_centroid.point = function(λ, φ) {
+ λ00 = λ, φ00 = φ;
+ d3_geo_centroid.point = nextPoint;
+ λ *= d3_radians;
+ var cosφ = Math.cos(φ *= d3_radians);
+ x0 = cosφ * Math.cos(λ);
+ y0 = cosφ * Math.sin(λ);
+ z0 = Math.sin(φ);
+ d3_geo_centroidPointXYZ(x0, y0, z0);
+ };
+ d3_geo_centroid.lineEnd = function() {
+ nextPoint(λ00, φ00);
+ d3_geo_centroid.lineEnd = d3_geo_centroidLineEnd;
+ d3_geo_centroid.point = d3_geo_centroidPoint;
+ };
+ function nextPoint(λ, φ) {
+ λ *= d3_radians;
+ var cosφ = Math.cos(φ *= d3_radians), x = cosφ * Math.cos(λ), y = cosφ * Math.sin(λ), z = Math.sin(φ), cx = y0 * z - z0 * y, cy = z0 * x - x0 * z, cz = x0 * y - y0 * x, m = Math.sqrt(cx * cx + cy * cy + cz * cz), u = x0 * x + y0 * y + z0 * z, v = m && -d3_acos(u) / m, w = Math.atan2(m, u);
+ d3_geo_centroidX2 += v * cx;
+ d3_geo_centroidY2 += v * cy;
+ d3_geo_centroidZ2 += v * cz;
+ d3_geo_centroidW1 += w;
+ d3_geo_centroidX1 += w * (x0 + (x0 = x));
+ d3_geo_centroidY1 += w * (y0 + (y0 = y));
+ d3_geo_centroidZ1 += w * (z0 + (z0 = z));
+ d3_geo_centroidPointXYZ(x0, y0, z0);
+ }
+ }
+ function d3_geo_compose(a, b) {
+ function compose(x, y) {
+ return x = a(x, y), b(x[0], x[1]);
+ }
+ if (a.invert && b.invert) compose.invert = function(x, y) {
+ return x = b.invert(x, y), x && a.invert(x[0], x[1]);
+ };
+ return compose;
+ }
+ function d3_true() {
+ return true;
+ }
+ function d3_geo_clipPolygon(segments, compare, clipStartInside, interpolate, listener) {
+ var subject = [], clip = [];
+ segments.forEach(function(segment) {
+ if ((n = segment.length - 1) <= 0) return;
+ var n, p0 = segment[0], p1 = segment[n];
+ if (d3_geo_sphericalEqual(p0, p1)) {
+ listener.lineStart();
+ for (var i = 0; i < n; ++i) listener.point((p0 = segment[i])[0], p0[1]);
+ listener.lineEnd();
+ return;
+ }
+ var a = new d3_geo_clipPolygonIntersection(p0, segment, null, true), b = new d3_geo_clipPolygonIntersection(p0, null, a, false);
+ a.o = b;
+ subject.push(a);
+ clip.push(b);
+ a = new d3_geo_clipPolygonIntersection(p1, segment, null, false);
+ b = new d3_geo_clipPolygonIntersection(p1, null, a, true);
+ a.o = b;
+ subject.push(a);
+ clip.push(b);
+ });
+ clip.sort(compare);
+ d3_geo_clipPolygonLinkCircular(subject);
+ d3_geo_clipPolygonLinkCircular(clip);
+ if (!subject.length) return;
+ for (var i = 0, entry = clipStartInside, n = clip.length; i < n; ++i) {
+ clip[i].e = entry = !entry;
+ }
+ var start = subject[0], points, point;
+ while (1) {
+ var current = start, isSubject = true;
+ while (current.v) if ((current = current.n) === start) return;
+ points = current.z;
+ listener.lineStart();
+ do {
+ current.v = current.o.v = true;
+ if (current.e) {
+ if (isSubject) {
+ for (var i = 0, n = points.length; i < n; ++i) listener.point((point = points[i])[0], point[1]);
+ } else {
+ interpolate(current.x, current.n.x, 1, listener);
+ }
+ current = current.n;
+ } else {
+ if (isSubject) {
+ points = current.p.z;
+ for (var i = points.length - 1; i >= 0; --i) listener.point((point = points[i])[0], point[1]);
+ } else {
+ interpolate(current.x, current.p.x, -1, listener);
+ }
+ current = current.p;
+ }
+ current = current.o;
+ points = current.z;
+ isSubject = !isSubject;
+ } while (!current.v);
+ listener.lineEnd();
+ }
+ }
+ function d3_geo_clipPolygonLinkCircular(array) {
+ if (!(n = array.length)) return;
+ var n, i = 0, a = array[0], b;
+ while (++i < n) {
+ a.n = b = array[i];
+ b.p = a;
+ a = b;
+ }
+ a.n = b = array[0];
+ b.p = a;
+ }
+ function d3_geo_clipPolygonIntersection(point, points, other, entry) {
+ this.x = point;
+ this.z = points;
+ this.o = other;
+ this.e = entry;
+ this.v = false;
+ this.n = this.p = null;
+ }
+ function d3_geo_clip(pointVisible, clipLine, interpolate, clipStart) {
+ return function(rotate, listener) {
+ var line = clipLine(listener), rotatedClipStart = rotate.invert(clipStart[0], clipStart[1]);
+ var clip = {
+ point: point,
+ lineStart: lineStart,
+ lineEnd: lineEnd,
+ polygonStart: function() {
+ clip.point = pointRing;
+ clip.lineStart = ringStart;
+ clip.lineEnd = ringEnd;
+ segments = [];
+ polygon = [];
+ },
+ polygonEnd: function() {
+ clip.point = point;
+ clip.lineStart = lineStart;
+ clip.lineEnd = lineEnd;
+ segments = d3.merge(segments);
+ var clipStartInside = d3_geo_pointInPolygon(rotatedClipStart, polygon);
+ if (segments.length) {
+ if (!polygonStarted) listener.polygonStart(), polygonStarted = true;
+ d3_geo_clipPolygon(segments, d3_geo_clipSort, clipStartInside, interpolate, listener);
+ } else if (clipStartInside) {
+ if (!polygonStarted) listener.polygonStart(), polygonStarted = true;
+ listener.lineStart();
+ interpolate(null, null, 1, listener);
+ listener.lineEnd();
+ }
+ if (polygonStarted) listener.polygonEnd(), polygonStarted = false;
+ segments = polygon = null;
+ },
+ sphere: function() {
+ listener.polygonStart();
+ listener.lineStart();
+ interpolate(null, null, 1, listener);
+ listener.lineEnd();
+ listener.polygonEnd();
+ }
+ };
+ function point(λ, φ) {
+ var point = rotate(λ, φ);
+ if (pointVisible(λ = point[0], φ = point[1])) listener.point(λ, φ);
+ }
+ function pointLine(λ, φ) {
+ var point = rotate(λ, φ);
+ line.point(point[0], point[1]);
+ }
+ function lineStart() {
+ clip.point = pointLine;
+ line.lineStart();
+ }
+ function lineEnd() {
+ clip.point = point;
+ line.lineEnd();
+ }
+ var segments;
+ var buffer = d3_geo_clipBufferListener(), ringListener = clipLine(buffer), polygonStarted = false, polygon, ring;
+ function pointRing(λ, φ) {
+ ring.push([ λ, φ ]);
+ var point = rotate(λ, φ);
+ ringListener.point(point[0], point[1]);
+ }
+ function ringStart() {
+ ringListener.lineStart();
+ ring = [];
+ }
+ function ringEnd() {
+ pointRing(ring[0][0], ring[0][1]);
+ ringListener.lineEnd();
+ var clean = ringListener.clean(), ringSegments = buffer.buffer(), segment, n = ringSegments.length;
+ ring.pop();
+ polygon.push(ring);
+ ring = null;
+ if (!n) return;
+ if (clean & 1) {
+ segment = ringSegments[0];
+ var n = segment.length - 1, i = -1, point;
+ if (n > 0) {
+ if (!polygonStarted) listener.polygonStart(), polygonStarted = true;
+ listener.lineStart();
+ while (++i < n) listener.point((point = segment[i])[0], point[1]);
+ listener.lineEnd();
+ }
+ return;
+ }
+ if (n > 1 && clean & 2) ringSegments.push(ringSegments.pop().concat(ringSegments.shift()));
+ segments.push(ringSegments.filter(d3_geo_clipSegmentLength1));
+ }
+ return clip;
+ };
+ }
+ function d3_geo_clipSegmentLength1(segment) {
+ return segment.length > 1;
+ }
+ function d3_geo_clipBufferListener() {
+ var lines = [], line;
+ return {
+ lineStart: function() {
+ lines.push(line = []);
+ },
+ point: function(λ, φ) {
+ line.push([ λ, φ ]);
+ },
+ lineEnd: d3_noop,
+ buffer: function() {
+ var buffer = lines;
+ lines = [];
+ line = null;
+ return buffer;
+ },
+ rejoin: function() {
+ if (lines.length > 1) lines.push(lines.pop().concat(lines.shift()));
+ }
+ };
+ }
+ function d3_geo_clipSort(a, b) {
+ return ((a = a.x)[0] < 0 ? a[1] - halfπ - ε : halfπ - a[1]) - ((b = b.x)[0] < 0 ? b[1] - halfπ - ε : halfπ - b[1]);
+ }
+ var d3_geo_clipAntimeridian = d3_geo_clip(d3_true, d3_geo_clipAntimeridianLine, d3_geo_clipAntimeridianInterpolate, [ -π, -π / 2 ]);
+ function d3_geo_clipAntimeridianLine(listener) {
+ var λ0 = NaN, φ0 = NaN, sλ0 = NaN, clean;
+ return {
+ lineStart: function() {
+ listener.lineStart();
+ clean = 1;
+ },
+ point: function(λ1, φ1) {
+ var sλ1 = λ1 > 0 ? π : -π, dλ = abs(λ1 - λ0);
+ if (abs(dλ - π) < ε) {
+ listener.point(λ0, φ0 = (φ0 + φ1) / 2 > 0 ? halfπ : -halfπ);
+ listener.point(sλ0, φ0);
+ listener.lineEnd();
+ listener.lineStart();
+ listener.point(sλ1, φ0);
+ listener.point(λ1, φ0);
+ clean = 0;
+ } else if (sλ0 !== sλ1 && dλ >= π) {
+ if (abs(λ0 - sλ0) < ε) λ0 -= sλ0 * ε;
+ if (abs(λ1 - sλ1) < ε) λ1 -= sλ1 * ε;
+ φ0 = d3_geo_clipAntimeridianIntersect(λ0, φ0, λ1, φ1);
+ listener.point(sλ0, φ0);
+ listener.lineEnd();
+ listener.lineStart();
+ listener.point(sλ1, φ0);
+ clean = 0;
+ }
+ listener.point(λ0 = λ1, φ0 = φ1);
+ sλ0 = sλ1;
+ },
+ lineEnd: function() {
+ listener.lineEnd();
+ λ0 = φ0 = NaN;
+ },
+ clean: function() {
+ return 2 - clean;
+ }
+ };
+ }
+ function d3_geo_clipAntimeridianIntersect(λ0, φ0, λ1, φ1) {
+ var cosφ0, cosφ1, sinλ0_λ1 = Math.sin(λ0 - λ1);
+ return abs(sinλ0_λ1) > ε ? Math.atan((Math.sin(φ0) * (cosφ1 = Math.cos(φ1)) * Math.sin(λ1) - Math.sin(φ1) * (cosφ0 = Math.cos(φ0)) * Math.sin(λ0)) / (cosφ0 * cosφ1 * sinλ0_λ1)) : (φ0 + φ1) / 2;
+ }
+ function d3_geo_clipAntimeridianInterpolate(from, to, direction, listener) {
+ var φ;
+ if (from == null) {
+ φ = direction * halfπ;
+ listener.point(-π, φ);
+ listener.point(0, φ);
+ listener.point(π, φ);
+ listener.point(π, 0);
+ listener.point(π, -φ);
+ listener.point(0, -φ);
+ listener.point(-π, -φ);
+ listener.point(-π, 0);
+ listener.point(-π, φ);
+ } else if (abs(from[0] - to[0]) > ε) {
+ var s = from[0] < to[0] ? π : -π;
+ φ = direction * s / 2;
+ listener.point(-s, φ);
+ listener.point(0, φ);
+ listener.point(s, φ);
+ } else {
+ listener.point(to[0], to[1]);
+ }
+ }
+ function d3_geo_pointInPolygon(point, polygon) {
+ var meridian = point[0], parallel = point[1], meridianNormal = [ Math.sin(meridian), -Math.cos(meridian), 0 ], polarAngle = 0, winding = 0;
+ d3_geo_areaRingSum.reset();
+ for (var i = 0, n = polygon.length; i < n; ++i) {
+ var ring = polygon[i], m = ring.length;
+ if (!m) continue;
+ var point0 = ring[0], λ0 = point0[0], φ0 = point0[1] / 2 + π / 4, sinφ0 = Math.sin(φ0), cosφ0 = Math.cos(φ0), j = 1;
+ while (true) {
+ if (j === m) j = 0;
+ point = ring[j];
+ var λ = point[0], φ = point[1] / 2 + π / 4, sinφ = Math.sin(φ), cosφ = Math.cos(φ), dλ = λ - λ0, sdλ = dλ >= 0 ? 1 : -1, adλ = sdλ * dλ, antimeridian = adλ > π, k = sinφ0 * sinφ;
+ d3_geo_areaRingSum.add(Math.atan2(k * sdλ * Math.sin(adλ), cosφ0 * cosφ + k * Math.cos(adλ)));
+ polarAngle += antimeridian ? dλ + sdλ * τ : dλ;
+ if (antimeridian ^ λ0 >= meridian ^ λ >= meridian) {
+ var arc = d3_geo_cartesianCross(d3_geo_cartesian(point0), d3_geo_cartesian(point));
+ d3_geo_cartesianNormalize(arc);
+ var intersection = d3_geo_cartesianCross(meridianNormal, arc);
+ d3_geo_cartesianNormalize(intersection);
+ var φarc = (antimeridian ^ dλ >= 0 ? -1 : 1) * d3_asin(intersection[2]);
+ if (parallel > φarc || parallel === φarc && (arc[0] || arc[1])) {
+ winding += antimeridian ^ dλ >= 0 ? 1 : -1;
+ }
+ }
+ if (!j++) break;
+ λ0 = λ, sinφ0 = sinφ, cosφ0 = cosφ, point0 = point;
+ }
+ }
+ return (polarAngle < -ε || polarAngle < ε && d3_geo_areaRingSum < 0) ^ winding & 1;
+ }
+ function d3_geo_clipCircle(radius) {
+ var cr = Math.cos(radius), smallRadius = cr > 0, notHemisphere = abs(cr) > ε, interpolate = d3_geo_circleInterpolate(radius, 6 * d3_radians);
+ return d3_geo_clip(visible, clipLine, interpolate, smallRadius ? [ 0, -radius ] : [ -π, radius - π ]);
+ function visible(λ, φ) {
+ return Math.cos(λ) * Math.cos(φ) > cr;
+ }
+ function clipLine(listener) {
+ var point0, c0, v0, v00, clean;
+ return {
+ lineStart: function() {
+ v00 = v0 = false;
+ clean = 1;
+ },
+ point: function(λ, φ) {
+ var point1 = [ λ, φ ], point2, v = visible(λ, φ), c = smallRadius ? v ? 0 : code(λ, φ) : v ? code(λ + (λ < 0 ? π : -π), φ) : 0;
+ if (!point0 && (v00 = v0 = v)) listener.lineStart();
+ if (v !== v0) {
+ point2 = intersect(point0, point1);
+ if (d3_geo_sphericalEqual(point0, point2) || d3_geo_sphericalEqual(point1, point2)) {
+ point1[0] += ε;
+ point1[1] += ε;
+ v = visible(point1[0], point1[1]);
+ }
+ }
+ if (v !== v0) {
+ clean = 0;
+ if (v) {
+ listener.lineStart();
+ point2 = intersect(point1, point0);
+ listener.point(point2[0], point2[1]);
+ } else {
+ point2 = intersect(point0, point1);
+ listener.point(point2[0], point2[1]);
+ listener.lineEnd();
+ }
+ point0 = point2;
+ } else if (notHemisphere && point0 && smallRadius ^ v) {
+ var t;
+ if (!(c & c0) && (t = intersect(point1, point0, true))) {
+ clean = 0;
+ if (smallRadius) {
+ listener.lineStart();
+ listener.point(t[0][0], t[0][1]);
+ listener.point(t[1][0], t[1][1]);
+ listener.lineEnd();
+ } else {
+ listener.point(t[1][0], t[1][1]);
+ listener.lineEnd();
+ listener.lineStart();
+ listener.point(t[0][0], t[0][1]);
+ }
+ }
+ }
+ if (v && (!point0 || !d3_geo_sphericalEqual(point0, point1))) {
+ listener.point(point1[0], point1[1]);
+ }
+ point0 = point1, v0 = v, c0 = c;
+ },
+ lineEnd: function() {
+ if (v0) listener.lineEnd();
+ point0 = null;
+ },
+ clean: function() {
+ return clean | (v00 && v0) << 1;
+ }
+ };
+ }
+ function intersect(a, b, two) {
+ var pa = d3_geo_cartesian(a), pb = d3_geo_cartesian(b);
+ var n1 = [ 1, 0, 0 ], n2 = d3_geo_cartesianCross(pa, pb), n2n2 = d3_geo_cartesianDot(n2, n2), n1n2 = n2[0], determinant = n2n2 - n1n2 * n1n2;
+ if (!determinant) return !two && a;
+ var c1 = cr * n2n2 / determinant, c2 = -cr * n1n2 / determinant, n1xn2 = d3_geo_cartesianCross(n1, n2), A = d3_geo_cartesianScale(n1, c1), B = d3_geo_cartesianScale(n2, c2);
+ d3_geo_cartesianAdd(A, B);
+ var u = n1xn2, w = d3_geo_cartesianDot(A, u), uu = d3_geo_cartesianDot(u, u), t2 = w * w - uu * (d3_geo_cartesianDot(A, A) - 1);
+ if (t2 < 0) return;
+ var t = Math.sqrt(t2), q = d3_geo_cartesianScale(u, (-w - t) / uu);
+ d3_geo_cartesianAdd(q, A);
+ q = d3_geo_spherical(q);
+ if (!two) return q;
+ var λ0 = a[0], λ1 = b[0], φ0 = a[1], φ1 = b[1], z;
+ if (λ1 < λ0) z = λ0, λ0 = λ1, λ1 = z;
+ var δλ = λ1 - λ0, polar = abs(δλ - π) < ε, meridian = polar || δλ < ε;
+ if (!polar && φ1 < φ0) z = φ0, φ0 = φ1, φ1 = z;
+ if (meridian ? polar ? φ0 + φ1 > 0 ^ q[1] < (abs(q[0] - λ0) < ε ? φ0 : φ1) : φ0 <= q[1] && q[1] <= φ1 : δλ > π ^ (λ0 <= q[0] && q[0] <= λ1)) {
+ var q1 = d3_geo_cartesianScale(u, (-w + t) / uu);
+ d3_geo_cartesianAdd(q1, A);
+ return [ q, d3_geo_spherical(q1) ];
+ }
+ }
+ function code(λ, φ) {
+ var r = smallRadius ? radius : π - radius, code = 0;
+ if (λ < -r) code |= 1; else if (λ > r) code |= 2;
+ if (φ < -r) code |= 4; else if (φ > r) code |= 8;
+ return code;
+ }
+ }
+ function d3_geom_clipLine(x0, y0, x1, y1) {
+ return function(line) {
+ var a = line.a, b = line.b, ax = a.x, ay = a.y, bx = b.x, by = b.y, t0 = 0, t1 = 1, dx = bx - ax, dy = by - ay, r;
+ r = x0 - ax;
+ if (!dx && r > 0) return;
+ r /= dx;
+ if (dx < 0) {
+ if (r < t0) return;
+ if (r < t1) t1 = r;
+ } else if (dx > 0) {
+ if (r > t1) return;
+ if (r > t0) t0 = r;
+ }
+ r = x1 - ax;
+ if (!dx && r < 0) return;
+ r /= dx;
+ if (dx < 0) {
+ if (r > t1) return;
+ if (r > t0) t0 = r;
+ } else if (dx > 0) {
+ if (r < t0) return;
+ if (r < t1) t1 = r;
+ }
+ r = y0 - ay;
+ if (!dy && r > 0) return;
+ r /= dy;
+ if (dy < 0) {
+ if (r < t0) return;
+ if (r < t1) t1 = r;
+ } else if (dy > 0) {
+ if (r > t1) return;
+ if (r > t0) t0 = r;
+ }
+ r = y1 - ay;
+ if (!dy && r < 0) return;
+ r /= dy;
+ if (dy < 0) {
+ if (r > t1) return;
+ if (r > t0) t0 = r;
+ } else if (dy > 0) {
+ if (r < t0) return;
+ if (r < t1) t1 = r;
+ }
+ if (t0 > 0) line.a = {
+ x: ax + t0 * dx,
+ y: ay + t0 * dy
+ };
+ if (t1 < 1) line.b = {
+ x: ax + t1 * dx,
+ y: ay + t1 * dy
+ };
+ return line;
+ };
+ }
+ var d3_geo_clipExtentMAX = 1e9;
+ d3.geo.clipExtent = function() {
+ var x0, y0, x1, y1, stream, clip, clipExtent = {
+ stream: function(output) {
+ if (stream) stream.valid = false;
+ stream = clip(output);
+ stream.valid = true;
+ return stream;
+ },
+ extent: function(_) {
+ if (!arguments.length) return [ [ x0, y0 ], [ x1, y1 ] ];
+ clip = d3_geo_clipExtent(x0 = +_[0][0], y0 = +_[0][1], x1 = +_[1][0], y1 = +_[1][1]);
+ if (stream) stream.valid = false, stream = null;
+ return clipExtent;
+ }
+ };
+ return clipExtent.extent([ [ 0, 0 ], [ 960, 500 ] ]);
+ };
+ function d3_geo_clipExtent(x0, y0, x1, y1) {
+ return function(listener) {
+ var listener_ = listener, bufferListener = d3_geo_clipBufferListener(), clipLine = d3_geom_clipLine(x0, y0, x1, y1), segments, polygon, ring;
+ var clip = {
+ point: point,
+ lineStart: lineStart,
+ lineEnd: lineEnd,
+ polygonStart: function() {
+ listener = bufferListener;
+ segments = [];
+ polygon = [];
+ clean = true;
+ },
+ polygonEnd: function() {
+ listener = listener_;
+ segments = d3.merge(segments);
+ var clipStartInside = insidePolygon([ x0, y1 ]), inside = clean && clipStartInside, visible = segments.length;
+ if (inside || visible) {
+ listener.polygonStart();
+ if (inside) {
+ listener.lineStart();
+ interpolate(null, null, 1, listener);
+ listener.lineEnd();
+ }
+ if (visible) {
+ d3_geo_clipPolygon(segments, compare, clipStartInside, interpolate, listener);
+ }
+ listener.polygonEnd();
+ }
+ segments = polygon = ring = null;
+ }
+ };
+ function insidePolygon(p) {
+ var wn = 0, n = polygon.length, y = p[1];
+ for (var i = 0; i < n; ++i) {
+ for (var j = 1, v = polygon[i], m = v.length, a = v[0], b; j < m; ++j) {
+ b = v[j];
+ if (a[1] <= y) {
+ if (b[1] > y && d3_cross2d(a, b, p) > 0) ++wn;
+ } else {
+ if (b[1] <= y && d3_cross2d(a, b, p) < 0) --wn;
+ }
+ a = b;
+ }
+ }
+ return wn !== 0;
+ }
+ function interpolate(from, to, direction, listener) {
+ var a = 0, a1 = 0;
+ if (from == null || (a = corner(from, direction)) !== (a1 = corner(to, direction)) || comparePoints(from, to) < 0 ^ direction > 0) {
+ do {
+ listener.point(a === 0 || a === 3 ? x0 : x1, a > 1 ? y1 : y0);
+ } while ((a = (a + direction + 4) % 4) !== a1);
+ } else {
+ listener.point(to[0], to[1]);
+ }
+ }
+ function pointVisible(x, y) {
+ return x0 <= x && x <= x1 && y0 <= y && y <= y1;
+ }
+ function point(x, y) {
+ if (pointVisible(x, y)) listener.point(x, y);
+ }
+ var x__, y__, v__, x_, y_, v_, first, clean;
+ function lineStart() {
+ clip.point = linePoint;
+ if (polygon) polygon.push(ring = []);
+ first = true;
+ v_ = false;
+ x_ = y_ = NaN;
+ }
+ function lineEnd() {
+ if (segments) {
+ linePoint(x__, y__);
+ if (v__ && v_) bufferListener.rejoin();
+ segments.push(bufferListener.buffer());
+ }
+ clip.point = point;
+ if (v_) listener.lineEnd();
+ }
+ function linePoint(x, y) {
+ x = Math.max(-d3_geo_clipExtentMAX, Math.min(d3_geo_clipExtentMAX, x));
+ y = Math.max(-d3_geo_clipExtentMAX, Math.min(d3_geo_clipExtentMAX, y));
+ var v = pointVisible(x, y);
+ if (polygon) ring.push([ x, y ]);
+ if (first) {
+ x__ = x, y__ = y, v__ = v;
+ first = false;
+ if (v) {
+ listener.lineStart();
+ listener.point(x, y);
+ }
+ } else {
+ if (v && v_) listener.point(x, y); else {
+ var l = {
+ a: {
+ x: x_,
+ y: y_
+ },
+ b: {
+ x: x,
+ y: y
+ }
+ };
+ if (clipLine(l)) {
+ if (!v_) {
+ listener.lineStart();
+ listener.point(l.a.x, l.a.y);
+ }
+ listener.point(l.b.x, l.b.y);
+ if (!v) listener.lineEnd();
+ clean = false;
+ } else if (v) {
+ listener.lineStart();
+ listener.point(x, y);
+ clean = false;
+ }
+ }
+ }
+ x_ = x, y_ = y, v_ = v;
+ }
+ return clip;
+ };
+ function corner(p, direction) {
+ return abs(p[0] - x0) < ε ? direction > 0 ? 0 : 3 : abs(p[0] - x1) < ε ? direction > 0 ? 2 : 1 : abs(p[1] - y0) < ε ? direction > 0 ? 1 : 0 : direction > 0 ? 3 : 2;
+ }
+ function compare(a, b) {
+ return comparePoints(a.x, b.x);
+ }
+ function comparePoints(a, b) {
+ var ca = corner(a, 1), cb = corner(b, 1);
+ return ca !== cb ? ca - cb : ca === 0 ? b[1] - a[1] : ca === 1 ? a[0] - b[0] : ca === 2 ? a[1] - b[1] : b[0] - a[0];
+ }
+ }
+ function d3_geo_conic(projectAt) {
+ var φ0 = 0, φ1 = π / 3, m = d3_geo_projectionMutator(projectAt), p = m(φ0, φ1);
+ p.parallels = function(_) {
+ if (!arguments.length) return [ φ0 / π * 180, φ1 / π * 180 ];
+ return m(φ0 = _[0] * π / 180, φ1 = _[1] * π / 180);
+ };
+ return p;
+ }
+ function d3_geo_conicEqualArea(φ0, φ1) {
+ var sinφ0 = Math.sin(φ0), n = (sinφ0 + Math.sin(φ1)) / 2, C = 1 + sinφ0 * (2 * n - sinφ0), ρ0 = Math.sqrt(C) / n;
+ function forward(λ, φ) {
+ var ρ = Math.sqrt(C - 2 * n * Math.sin(φ)) / n;
+ return [ ρ * Math.sin(λ *= n), ρ0 - ρ * Math.cos(λ) ];
+ }
+ forward.invert = function(x, y) {
+ var ρ0_y = ρ0 - y;
+ return [ Math.atan2(x, ρ0_y) / n, d3_asin((C - (x * x + ρ0_y * ρ0_y) * n * n) / (2 * n)) ];
+ };
+ return forward;
+ }
+ (d3.geo.conicEqualArea = function() {
+ return d3_geo_conic(d3_geo_conicEqualArea);
+ }).raw = d3_geo_conicEqualArea;
+ d3.geo.albers = function() {
+ return d3.geo.conicEqualArea().rotate([ 96, 0 ]).center([ -.6, 38.7 ]).parallels([ 29.5, 45.5 ]).scale(1070);
+ };
+ d3.geo.albersUsa = function() {
+ var lower48 = d3.geo.albers();
+ var alaska = d3.geo.conicEqualArea().rotate([ 154, 0 ]).center([ -2, 58.5 ]).parallels([ 55, 65 ]);
+ var hawaii = d3.geo.conicEqualArea().rotate([ 157, 0 ]).center([ -3, 19.9 ]).parallels([ 8, 18 ]);
+ var point, pointStream = {
+ point: function(x, y) {
+ point = [ x, y ];
+ }
+ }, lower48Point, alaskaPoint, hawaiiPoint;
+ function albersUsa(coordinates) {
+ var x = coordinates[0], y = coordinates[1];
+ point = null;
+ (lower48Point(x, y), point) || (alaskaPoint(x, y), point) || hawaiiPoint(x, y);
+ return point;
+ }
+ albersUsa.invert = function(coordinates) {
+ var k = lower48.scale(), t = lower48.translate(), x = (coordinates[0] - t[0]) / k, y = (coordinates[1] - t[1]) / k;
+ return (y >= .12 && y < .234 && x >= -.425 && x < -.214 ? alaska : y >= .166 && y < .234 && x >= -.214 && x < -.115 ? hawaii : lower48).invert(coordinates);
+ };
+ albersUsa.stream = function(stream) {
+ var lower48Stream = lower48.stream(stream), alaskaStream = alaska.stream(stream), hawaiiStream = hawaii.stream(stream);
+ return {
+ point: function(x, y) {
+ lower48Stream.point(x, y);
+ alaskaStream.point(x, y);
+ hawaiiStream.point(x, y);
+ },
+ sphere: function() {
+ lower48Stream.sphere();
+ alaskaStream.sphere();
+ hawaiiStream.sphere();
+ },
+ lineStart: function() {
+ lower48Stream.lineStart();
+ alaskaStream.lineStart();
+ hawaiiStream.lineStart();
+ },
+ lineEnd: function() {
+ lower48Stream.lineEnd();
+ alaskaStream.lineEnd();
+ hawaiiStream.lineEnd();
+ },
+ polygonStart: function() {
+ lower48Stream.polygonStart();
+ alaskaStream.polygonStart();
+ hawaiiStream.polygonStart();
+ },
+ polygonEnd: function() {
+ lower48Stream.polygonEnd();
+ alaskaStream.polygonEnd();
+ hawaiiStream.polygonEnd();
+ }
+ };
+ };
+ albersUsa.precision = function(_) {
+ if (!arguments.length) return lower48.precision();
+ lower48.precision(_);
+ alaska.precision(_);
+ hawaii.precision(_);
+ return albersUsa;
+ };
+ albersUsa.scale = function(_) {
+ if (!arguments.length) return lower48.scale();
+ lower48.scale(_);
+ alaska.scale(_ * .35);
+ hawaii.scale(_);
+ return albersUsa.translate(lower48.translate());
+ };
+ albersUsa.translate = function(_) {
+ if (!arguments.length) return lower48.translate();
+ var k = lower48.scale(), x = +_[0], y = +_[1];
+ lower48Point = lower48.translate(_).clipExtent([ [ x - .455 * k, y - .238 * k ], [ x + .455 * k, y + .238 * k ] ]).stream(pointStream).point;
+ alaskaPoint = alaska.translate([ x - .307 * k, y + .201 * k ]).clipExtent([ [ x - .425 * k + ε, y + .12 * k + ε ], [ x - .214 * k - ε, y + .234 * k - ε ] ]).stream(pointStream).point;
+ hawaiiPoint = hawaii.translate([ x - .205 * k, y + .212 * k ]).clipExtent([ [ x - .214 * k + ε, y + .166 * k + ε ], [ x - .115 * k - ε, y + .234 * k - ε ] ]).stream(pointStream).point;
+ return albersUsa;
+ };
+ return albersUsa.scale(1070);
+ };
+ var d3_geo_pathAreaSum, d3_geo_pathAreaPolygon, d3_geo_pathArea = {
+ point: d3_noop,
+ lineStart: d3_noop,
+ lineEnd: d3_noop,
+ polygonStart: function() {
+ d3_geo_pathAreaPolygon = 0;
+ d3_geo_pathArea.lineStart = d3_geo_pathAreaRingStart;
+ },
+ polygonEnd: function() {
+ d3_geo_pathArea.lineStart = d3_geo_pathArea.lineEnd = d3_geo_pathArea.point = d3_noop;
+ d3_geo_pathAreaSum += abs(d3_geo_pathAreaPolygon / 2);
+ }
+ };
+ function d3_geo_pathAreaRingStart() {
+ var x00, y00, x0, y0;
+ d3_geo_pathArea.point = function(x, y) {
+ d3_geo_pathArea.point = nextPoint;
+ x00 = x0 = x, y00 = y0 = y;
+ };
+ function nextPoint(x, y) {
+ d3_geo_pathAreaPolygon += y0 * x - x0 * y;
+ x0 = x, y0 = y;
+ }
+ d3_geo_pathArea.lineEnd = function() {
+ nextPoint(x00, y00);
+ };
+ }
+ var d3_geo_pathBoundsX0, d3_geo_pathBoundsY0, d3_geo_pathBoundsX1, d3_geo_pathBoundsY1;
+ var d3_geo_pathBounds = {
+ point: d3_geo_pathBoundsPoint,
+ lineStart: d3_noop,
+ lineEnd: d3_noop,
+ polygonStart: d3_noop,
+ polygonEnd: d3_noop
+ };
+ function d3_geo_pathBoundsPoint(x, y) {
+ if (x < d3_geo_pathBoundsX0) d3_geo_pathBoundsX0 = x;
+ if (x > d3_geo_pathBoundsX1) d3_geo_pathBoundsX1 = x;
+ if (y < d3_geo_pathBoundsY0) d3_geo_pathBoundsY0 = y;
+ if (y > d3_geo_pathBoundsY1) d3_geo_pathBoundsY1 = y;
+ }
+ function d3_geo_pathBuffer() {
+ var pointCircle = d3_geo_pathBufferCircle(4.5), buffer = [];
+ var stream = {
+ point: point,
+ lineStart: function() {
+ stream.point = pointLineStart;
+ },
+ lineEnd: lineEnd,
+ polygonStart: function() {
+ stream.lineEnd = lineEndPolygon;
+ },
+ polygonEnd: function() {
+ stream.lineEnd = lineEnd;
+ stream.point = point;
+ },
+ pointRadius: function(_) {
+ pointCircle = d3_geo_pathBufferCircle(_);
+ return stream;
+ },
+ result: function() {
+ if (buffer.length) {
+ var result = buffer.join("");
+ buffer = [];
+ return result;
+ }
+ }
+ };
+ function point(x, y) {
+ buffer.push("M", x, ",", y, pointCircle);
+ }
+ function pointLineStart(x, y) {
+ buffer.push("M", x, ",", y);
+ stream.point = pointLine;
+ }
+ function pointLine(x, y) {
+ buffer.push("L", x, ",", y);
+ }
+ function lineEnd() {
+ stream.point = point;
+ }
+ function lineEndPolygon() {
+ buffer.push("Z");
+ }
+ return stream;
+ }
+ function d3_geo_pathBufferCircle(radius) {
+ return "m0," + radius + "a" + radius + "," + radius + " 0 1,1 0," + -2 * radius + "a" + radius + "," + radius + " 0 1,1 0," + 2 * radius + "z";
+ }
+ var d3_geo_pathCentroid = {
+ point: d3_geo_pathCentroidPoint,
+ lineStart: d3_geo_pathCentroidLineStart,
+ lineEnd: d3_geo_pathCentroidLineEnd,
+ polygonStart: function() {
+ d3_geo_pathCentroid.lineStart = d3_geo_pathCentroidRingStart;
+ },
+ polygonEnd: function() {
+ d3_geo_pathCentroid.point = d3_geo_pathCentroidPoint;
+ d3_geo_pathCentroid.lineStart = d3_geo_pathCentroidLineStart;
+ d3_geo_pathCentroid.lineEnd = d3_geo_pathCentroidLineEnd;
+ }
+ };
+ function d3_geo_pathCentroidPoint(x, y) {
+ d3_geo_centroidX0 += x;
+ d3_geo_centroidY0 += y;
+ ++d3_geo_centroidZ0;
+ }
+ function d3_geo_pathCentroidLineStart() {
+ var x0, y0;
+ d3_geo_pathCentroid.point = function(x, y) {
+ d3_geo_pathCentroid.point = nextPoint;
+ d3_geo_pathCentroidPoint(x0 = x, y0 = y);
+ };
+ function nextPoint(x, y) {
+ var dx = x - x0, dy = y - y0, z = Math.sqrt(dx * dx + dy * dy);
+ d3_geo_centroidX1 += z * (x0 + x) / 2;
+ d3_geo_centroidY1 += z * (y0 + y) / 2;
+ d3_geo_centroidZ1 += z;
+ d3_geo_pathCentroidPoint(x0 = x, y0 = y);
+ }
+ }
+ function d3_geo_pathCentroidLineEnd() {
+ d3_geo_pathCentroid.point = d3_geo_pathCentroidPoint;
+ }
+ function d3_geo_pathCentroidRingStart() {
+ var x00, y00, x0, y0;
+ d3_geo_pathCentroid.point = function(x, y) {
+ d3_geo_pathCentroid.point = nextPoint;
+ d3_geo_pathCentroidPoint(x00 = x0 = x, y00 = y0 = y);
+ };
+ function nextPoint(x, y) {
+ var dx = x - x0, dy = y - y0, z = Math.sqrt(dx * dx + dy * dy);
+ d3_geo_centroidX1 += z * (x0 + x) / 2;
+ d3_geo_centroidY1 += z * (y0 + y) / 2;
+ d3_geo_centroidZ1 += z;
+ z = y0 * x - x0 * y;
+ d3_geo_centroidX2 += z * (x0 + x);
+ d3_geo_centroidY2 += z * (y0 + y);
+ d3_geo_centroidZ2 += z * 3;
+ d3_geo_pathCentroidPoint(x0 = x, y0 = y);
+ }
+ d3_geo_pathCentroid.lineEnd = function() {
+ nextPoint(x00, y00);
+ };
+ }
+ function d3_geo_pathContext(context) {
+ var pointRadius = 4.5;
+ var stream = {
+ point: point,
+ lineStart: function() {
+ stream.point = pointLineStart;
+ },
+ lineEnd: lineEnd,
+ polygonStart: function() {
+ stream.lineEnd = lineEndPolygon;
+ },
+ polygonEnd: function() {
+ stream.lineEnd = lineEnd;
+ stream.point = point;
+ },
+ pointRadius: function(_) {
+ pointRadius = _;
+ return stream;
+ },
+ result: d3_noop
+ };
+ function point(x, y) {
+ context.moveTo(x + pointRadius, y);
+ context.arc(x, y, pointRadius, 0, τ);
+ }
+ function pointLineStart(x, y) {
+ context.moveTo(x, y);
+ stream.point = pointLine;
+ }
+ function pointLine(x, y) {
+ context.lineTo(x, y);
+ }
+ function lineEnd() {
+ stream.point = point;
+ }
+ function lineEndPolygon() {
+ context.closePath();
+ }
+ return stream;
+ }
+ function d3_geo_resample(project) {
+ var δ2 = .5, cosMinDistance = Math.cos(30 * d3_radians), maxDepth = 16;
+ function resample(stream) {
+ return (maxDepth ? resampleRecursive : resampleNone)(stream);
+ }
+ function resampleNone(stream) {
+ return d3_geo_transformPoint(stream, function(x, y) {
+ x = project(x, y);
+ stream.point(x[0], x[1]);
+ });
+ }
+ function resampleRecursive(stream) {
+ var λ00, φ00, x00, y00, a00, b00, c00, λ0, x0, y0, a0, b0, c0;
+ var resample = {
+ point: point,
+ lineStart: lineStart,
+ lineEnd: lineEnd,
+ polygonStart: function() {
+ stream.polygonStart();
+ resample.lineStart = ringStart;
+ },
+ polygonEnd: function() {
+ stream.polygonEnd();
+ resample.lineStart = lineStart;
+ }
+ };
+ function point(x, y) {
+ x = project(x, y);
+ stream.point(x[0], x[1]);
+ }
+ function lineStart() {
+ x0 = NaN;
+ resample.point = linePoint;
+ stream.lineStart();
+ }
+ function linePoint(λ, φ) {
+ var c = d3_geo_cartesian([ λ, φ ]), p = project(λ, φ);
+ resampleLineTo(x0, y0, λ0, a0, b0, c0, x0 = p[0], y0 = p[1], λ0 = λ, a0 = c[0], b0 = c[1], c0 = c[2], maxDepth, stream);
+ stream.point(x0, y0);
+ }
+ function lineEnd() {
+ resample.point = point;
+ stream.lineEnd();
+ }
+ function ringStart() {
+ lineStart();
+ resample.point = ringPoint;
+ resample.lineEnd = ringEnd;
+ }
+ function ringPoint(λ, φ) {
+ linePoint(λ00 = λ, φ00 = φ), x00 = x0, y00 = y0, a00 = a0, b00 = b0, c00 = c0;
+ resample.point = linePoint;
+ }
+ function ringEnd() {
+ resampleLineTo(x0, y0, λ0, a0, b0, c0, x00, y00, λ00, a00, b00, c00, maxDepth, stream);
+ resample.lineEnd = lineEnd;
+ lineEnd();
+ }
+ return resample;
+ }
+ function resampleLineTo(x0, y0, λ0, a0, b0, c0, x1, y1, λ1, a1, b1, c1, depth, stream) {
+ var dx = x1 - x0, dy = y1 - y0, d2 = dx * dx + dy * dy;
+ if (d2 > 4 * δ2 && depth--) {
+ var a = a0 + a1, b = b0 + b1, c = c0 + c1, m = Math.sqrt(a * a + b * b + c * c), φ2 = Math.asin(c /= m), λ2 = abs(abs(c) - 1) < ε || abs(λ0 - λ1) < ε ? (λ0 + λ1) / 2 : Math.atan2(b, a), p = project(λ2, φ2), x2 = p[0], y2 = p[1], dx2 = x2 - x0, dy2 = y2 - y0, dz = dy * dx2 - dx * dy2;
+ if (dz * dz / d2 > δ2 || abs((dx * dx2 + dy * dy2) / d2 - .5) > .3 || a0 * a1 + b0 * b1 + c0 * c1 < cosMinDistance) {
+ resampleLineTo(x0, y0, λ0, a0, b0, c0, x2, y2, λ2, a /= m, b /= m, c, depth, stream);
+ stream.point(x2, y2);
+ resampleLineTo(x2, y2, λ2, a, b, c, x1, y1, λ1, a1, b1, c1, depth, stream);
+ }
+ }
+ }
+ resample.precision = function(_) {
+ if (!arguments.length) return Math.sqrt(δ2);
+ maxDepth = (δ2 = _ * _) > 0 && 16;
+ return resample;
+ };
+ return resample;
+ }
+ d3.geo.path = function() {
+ var pointRadius = 4.5, projection, context, projectStream, contextStream, cacheStream;
+ function path(object) {
+ if (object) {
+ if (typeof pointRadius === "function") contextStream.pointRadius(+pointRadius.apply(this, arguments));
+ if (!cacheStream || !cacheStream.valid) cacheStream = projectStream(contextStream);
+ d3.geo.stream(object, cacheStream);
+ }
+ return contextStream.result();
+ }
+ path.area = function(object) {
+ d3_geo_pathAreaSum = 0;
+ d3.geo.stream(object, projectStream(d3_geo_pathArea));
+ return d3_geo_pathAreaSum;
+ };
+ path.centroid = function(object) {
+ d3_geo_centroidX0 = d3_geo_centroidY0 = d3_geo_centroidZ0 = d3_geo_centroidX1 = d3_geo_centroidY1 = d3_geo_centroidZ1 = d3_geo_centroidX2 = d3_geo_centroidY2 = d3_geo_centroidZ2 = 0;
+ d3.geo.stream(object, projectStream(d3_geo_pathCentroid));
+ return d3_geo_centroidZ2 ? [ d3_geo_centroidX2 / d3_geo_centroidZ2, d3_geo_centroidY2 / d3_geo_centroidZ2 ] : d3_geo_centroidZ1 ? [ d3_geo_centroidX1 / d3_geo_centroidZ1, d3_geo_centroidY1 / d3_geo_centroidZ1 ] : d3_geo_centroidZ0 ? [ d3_geo_centroidX0 / d3_geo_centroidZ0, d3_geo_centroidY0 / d3_geo_centroidZ0 ] : [ NaN, NaN ];
+ };
+ path.bounds = function(object) {
+ d3_geo_pathBoundsX1 = d3_geo_pathBoundsY1 = -(d3_geo_pathBoundsX0 = d3_geo_pathBoundsY0 = Infinity);
+ d3.geo.stream(object, projectStream(d3_geo_pathBounds));
+ return [ [ d3_geo_pathBoundsX0, d3_geo_pathBoundsY0 ], [ d3_geo_pathBoundsX1, d3_geo_pathBoundsY1 ] ];
+ };
+ path.projection = function(_) {
+ if (!arguments.length) return projection;
+ projectStream = (projection = _) ? _.stream || d3_geo_pathProjectStream(_) : d3_identity;
+ return reset();
+ };
+ path.context = function(_) {
+ if (!arguments.length) return context;
+ contextStream = (context = _) == null ? new d3_geo_pathBuffer() : new d3_geo_pathContext(_);
+ if (typeof pointRadius !== "function") contextStream.pointRadius(pointRadius);
+ return reset();
+ };
+ path.pointRadius = function(_) {
+ if (!arguments.length) return pointRadius;
+ pointRadius = typeof _ === "function" ? _ : (contextStream.pointRadius(+_), +_);
+ return path;
+ };
+ function reset() {
+ cacheStream = null;
+ return path;
+ }
+ return path.projection(d3.geo.albersUsa()).context(null);
+ };
+ function d3_geo_pathProjectStream(project) {
+ var resample = d3_geo_resample(function(x, y) {
+ return project([ x * d3_degrees, y * d3_degrees ]);
+ });
+ return function(stream) {
+ return d3_geo_projectionRadians(resample(stream));
+ };
+ }
+ d3.geo.transform = function(methods) {
+ return {
+ stream: function(stream) {
+ var transform = new d3_geo_transform(stream);
+ for (var k in methods) transform[k] = methods[k];
+ return transform;
+ }
+ };
+ };
+ function d3_geo_transform(stream) {
+ this.stream = stream;
+ }
+ d3_geo_transform.prototype = {
+ point: function(x, y) {
+ this.stream.point(x, y);
+ },
+ sphere: function() {
+ this.stream.sphere();
+ },
+ lineStart: function() {
+ this.stream.lineStart();
+ },
+ lineEnd: function() {
+ this.stream.lineEnd();
+ },
+ polygonStart: function() {
+ this.stream.polygonStart();
+ },
+ polygonEnd: function() {
+ this.stream.polygonEnd();
+ }
+ };
+ function d3_geo_transformPoint(stream, point) {
+ return {
+ point: point,
+ sphere: function() {
+ stream.sphere();
+ },
+ lineStart: function() {
+ stream.lineStart();
+ },
+ lineEnd: function() {
+ stream.lineEnd();
+ },
+ polygonStart: function() {
+ stream.polygonStart();
+ },
+ polygonEnd: function() {
+ stream.polygonEnd();
+ }
+ };
+ }
+ d3.geo.projection = d3_geo_projection;
+ d3.geo.projectionMutator = d3_geo_projectionMutator;
+ function d3_geo_projection(project) {
+ return d3_geo_projectionMutator(function() {
+ return project;
+ })();
+ }
+ function d3_geo_projectionMutator(projectAt) {
+ var project, rotate, projectRotate, projectResample = d3_geo_resample(function(x, y) {
+ x = project(x, y);
+ return [ x[0] * k + δx, δy - x[1] * k ];
+ }), k = 150, x = 480, y = 250, λ = 0, φ = 0, δλ = 0, δφ = 0, δγ = 0, δx, δy, preclip = d3_geo_clipAntimeridian, postclip = d3_identity, clipAngle = null, clipExtent = null, stream;
+ function projection(point) {
+ point = projectRotate(point[0] * d3_radians, point[1] * d3_radians);
+ return [ point[0] * k + δx, δy - point[1] * k ];
+ }
+ function invert(point) {
+ point = projectRotate.invert((point[0] - δx) / k, (δy - point[1]) / k);
+ return point && [ point[0] * d3_degrees, point[1] * d3_degrees ];
+ }
+ projection.stream = function(output) {
+ if (stream) stream.valid = false;
+ stream = d3_geo_projectionRadians(preclip(rotate, projectResample(postclip(output))));
+ stream.valid = true;
+ return stream;
+ };
+ projection.clipAngle = function(_) {
+ if (!arguments.length) return clipAngle;
+ preclip = _ == null ? (clipAngle = _, d3_geo_clipAntimeridian) : d3_geo_clipCircle((clipAngle = +_) * d3_radians);
+ return invalidate();
+ };
+ projection.clipExtent = function(_) {
+ if (!arguments.length) return clipExtent;
+ clipExtent = _;
+ postclip = _ ? d3_geo_clipExtent(_[0][0], _[0][1], _[1][0], _[1][1]) : d3_identity;
+ return invalidate();
+ };
+ projection.scale = function(_) {
+ if (!arguments.length) return k;
+ k = +_;
+ return reset();
+ };
+ projection.translate = function(_) {
+ if (!arguments.length) return [ x, y ];
+ x = +_[0];
+ y = +_[1];
+ return reset();
+ };
+ projection.center = function(_) {
+ if (!arguments.length) return [ λ * d3_degrees, φ * d3_degrees ];
+ λ = _[0] % 360 * d3_radians;
+ φ = _[1] % 360 * d3_radians;
+ return reset();
+ };
+ projection.rotate = function(_) {
+ if (!arguments.length) return [ δλ * d3_degrees, δφ * d3_degrees, δγ * d3_degrees ];
+ δλ = _[0] % 360 * d3_radians;
+ δφ = _[1] % 360 * d3_radians;
+ δγ = _.length > 2 ? _[2] % 360 * d3_radians : 0;
+ return reset();
+ };
+ d3.rebind(projection, projectResample, "precision");
+ function reset() {
+ projectRotate = d3_geo_compose(rotate = d3_geo_rotation(δλ, δφ, δγ), project);
+ var center = project(λ, φ);
+ δx = x - center[0] * k;
+ δy = y + center[1] * k;
+ return invalidate();
+ }
+ function invalidate() {
+ if (stream) stream.valid = false, stream = null;
+ return projection;
+ }
+ return function() {
+ project = projectAt.apply(this, arguments);
+ projection.invert = project.invert && invert;
+ return reset();
+ };
+ }
+ function d3_geo_projectionRadians(stream) {
+ return d3_geo_transformPoint(stream, function(x, y) {
+ stream.point(x * d3_radians, y * d3_radians);
+ });
+ }
+ function d3_geo_equirectangular(λ, φ) {
+ return [ λ, φ ];
+ }
+ (d3.geo.equirectangular = function() {
+ return d3_geo_projection(d3_geo_equirectangular);
+ }).raw = d3_geo_equirectangular.invert = d3_geo_equirectangular;
+ d3.geo.rotation = function(rotate) {
+ rotate = d3_geo_rotation(rotate[0] % 360 * d3_radians, rotate[1] * d3_radians, rotate.length > 2 ? rotate[2] * d3_radians : 0);
+ function forward(coordinates) {
+ coordinates = rotate(coordinates[0] * d3_radians, coordinates[1] * d3_radians);
+ return coordinates[0] *= d3_degrees, coordinates[1] *= d3_degrees, coordinates;
+ }
+ forward.invert = function(coordinates) {
+ coordinates = rotate.invert(coordinates[0] * d3_radians, coordinates[1] * d3_radians);
+ return coordinates[0] *= d3_degrees, coordinates[1] *= d3_degrees, coordinates;
+ };
+ return forward;
+ };
+ function d3_geo_identityRotation(λ, φ) {
+ return [ λ > π ? λ - τ : λ < -π ? λ + τ : λ, φ ];
+ }
+ d3_geo_identityRotation.invert = d3_geo_equirectangular;
+ function d3_geo_rotation(δλ, δφ, δγ) {
+ return δλ ? δφ || δγ ? d3_geo_compose(d3_geo_rotationλ(δλ), d3_geo_rotationφγ(δφ, δγ)) : d3_geo_rotationλ(δλ) : δφ || δγ ? d3_geo_rotationφγ(δφ, δγ) : d3_geo_identityRotation;
+ }
+ function d3_geo_forwardRotationλ(δλ) {
+ return function(λ, φ) {
+ return λ += δλ, [ λ > π ? λ - τ : λ < -π ? λ + τ : λ, φ ];
+ };
+ }
+ function d3_geo_rotationλ(δλ) {
+ var rotation = d3_geo_forwardRotationλ(δλ);
+ rotation.invert = d3_geo_forwardRotationλ(-δλ);
+ return rotation;
+ }
+ function d3_geo_rotationφγ(δφ, δγ) {
+ var cosδφ = Math.cos(δφ), sinδφ = Math.sin(δφ), cosδγ = Math.cos(δγ), sinδγ = Math.sin(δγ);
+ function rotation(λ, φ) {
+ var cosφ = Math.cos(φ), x = Math.cos(λ) * cosφ, y = Math.sin(λ) * cosφ, z = Math.sin(φ), k = z * cosδφ + x * sinδφ;
+ return [ Math.atan2(y * cosδγ - k * sinδγ, x * cosδφ - z * sinδφ), d3_asin(k * cosδγ + y * sinδγ) ];
+ }
+ rotation.invert = function(λ, φ) {
+ var cosφ = Math.cos(φ), x = Math.cos(λ) * cosφ, y = Math.sin(λ) * cosφ, z = Math.sin(φ), k = z * cosδγ - y * sinδγ;
+ return [ Math.atan2(y * cosδγ + z * sinδγ, x * cosδφ + k * sinδφ), d3_asin(k * cosδφ - x * sinδφ) ];
+ };
+ return rotation;
+ }
+ d3.geo.circle = function() {
+ var origin = [ 0, 0 ], angle, precision = 6, interpolate;
+ function circle() {
+ var center = typeof origin === "function" ? origin.apply(this, arguments) : origin, rotate = d3_geo_rotation(-center[0] * d3_radians, -center[1] * d3_radians, 0).invert, ring = [];
+ interpolate(null, null, 1, {
+ point: function(x, y) {
+ ring.push(x = rotate(x, y));
+ x[0] *= d3_degrees, x[1] *= d3_degrees;
+ }
+ });
+ return {
+ type: "Polygon",
+ coordinates: [ ring ]
+ };
+ }
+ circle.origin = function(x) {
+ if (!arguments.length) return origin;
+ origin = x;
+ return circle;
+ };
+ circle.angle = function(x) {
+ if (!arguments.length) return angle;
+ interpolate = d3_geo_circleInterpolate((angle = +x) * d3_radians, precision * d3_radians);
+ return circle;
+ };
+ circle.precision = function(_) {
+ if (!arguments.length) return precision;
+ interpolate = d3_geo_circleInterpolate(angle * d3_radians, (precision = +_) * d3_radians);
+ return circle;
+ };
+ return circle.angle(90);
+ };
+ function d3_geo_circleInterpolate(radius, precision) {
+ var cr = Math.cos(radius), sr = Math.sin(radius);
+ return function(from, to, direction, listener) {
+ var step = direction * precision;
+ if (from != null) {
+ from = d3_geo_circleAngle(cr, from);
+ to = d3_geo_circleAngle(cr, to);
+ if (direction > 0 ? from < to : from > to) from += direction * τ;
+ } else {
+ from = radius + direction * τ;
+ to = radius - .5 * step;
+ }
+ for (var point, t = from; direction > 0 ? t > to : t < to; t -= step) {
+ listener.point((point = d3_geo_spherical([ cr, -sr * Math.cos(t), -sr * Math.sin(t) ]))[0], point[1]);
+ }
+ };
+ }
+ function d3_geo_circleAngle(cr, point) {
+ var a = d3_geo_cartesian(point);
+ a[0] -= cr;
+ d3_geo_cartesianNormalize(a);
+ var angle = d3_acos(-a[1]);
+ return ((-a[2] < 0 ? -angle : angle) + 2 * Math.PI - ε) % (2 * Math.PI);
+ }
+ d3.geo.distance = function(a, b) {
+ var Δλ = (b[0] - a[0]) * d3_radians, φ0 = a[1] * d3_radians, φ1 = b[1] * d3_radians, sinΔλ = Math.sin(Δλ), cosΔλ = Math.cos(Δλ), sinφ0 = Math.sin(φ0), cosφ0 = Math.cos(φ0), sinφ1 = Math.sin(φ1), cosφ1 = Math.cos(φ1), t;
+ return Math.atan2(Math.sqrt((t = cosφ1 * sinΔλ) * t + (t = cosφ0 * sinφ1 - sinφ0 * cosφ1 * cosΔλ) * t), sinφ0 * sinφ1 + cosφ0 * cosφ1 * cosΔλ);
+ };
+ d3.geo.graticule = function() {
+ var x1, x0, X1, X0, y1, y0, Y1, Y0, dx = 10, dy = dx, DX = 90, DY = 360, x, y, X, Y, precision = 2.5;
+ function graticule() {
+ return {
+ type: "MultiLineString",
+ coordinates: lines()
+ };
+ }
+ function lines() {
+ return d3.range(Math.ceil(X0 / DX) * DX, X1, DX).map(X).concat(d3.range(Math.ceil(Y0 / DY) * DY, Y1, DY).map(Y)).concat(d3.range(Math.ceil(x0 / dx) * dx, x1, dx).filter(function(x) {
+ return abs(x % DX) > ε;
+ }).map(x)).concat(d3.range(Math.ceil(y0 / dy) * dy, y1, dy).filter(function(y) {
+ return abs(y % DY) > ε;
+ }).map(y));
+ }
+ graticule.lines = function() {
+ return lines().map(function(coordinates) {
+ return {
+ type: "LineString",
+ coordinates: coordinates
+ };
+ });
+ };
+ graticule.outline = function() {
+ return {
+ type: "Polygon",
+ coordinates: [ X(X0).concat(Y(Y1).slice(1), X(X1).reverse().slice(1), Y(Y0).reverse().slice(1)) ]
+ };
+ };
+ graticule.extent = function(_) {
+ if (!arguments.length) return graticule.minorExtent();
+ return graticule.majorExtent(_).minorExtent(_);
+ };
+ graticule.majorExtent = function(_) {
+ if (!arguments.length) return [ [ X0, Y0 ], [ X1, Y1 ] ];
+ X0 = +_[0][0], X1 = +_[1][0];
+ Y0 = +_[0][1], Y1 = +_[1][1];
+ if (X0 > X1) _ = X0, X0 = X1, X1 = _;
+ if (Y0 > Y1) _ = Y0, Y0 = Y1, Y1 = _;
+ return graticule.precision(precision);
+ };
+ graticule.minorExtent = function(_) {
+ if (!arguments.length) return [ [ x0, y0 ], [ x1, y1 ] ];
+ x0 = +_[0][0], x1 = +_[1][0];
+ y0 = +_[0][1], y1 = +_[1][1];
+ if (x0 > x1) _ = x0, x0 = x1, x1 = _;
+ if (y0 > y1) _ = y0, y0 = y1, y1 = _;
+ return graticule.precision(precision);
+ };
+ graticule.step = function(_) {
+ if (!arguments.length) return graticule.minorStep();
+ return graticule.majorStep(_).minorStep(_);
+ };
+ graticule.majorStep = function(_) {
+ if (!arguments.length) return [ DX, DY ];
+ DX = +_[0], DY = +_[1];
+ return graticule;
+ };
+ graticule.minorStep = function(_) {
+ if (!arguments.length) return [ dx, dy ];
+ dx = +_[0], dy = +_[1];
+ return graticule;
+ };
+ graticule.precision = function(_) {
+ if (!arguments.length) return precision;
+ precision = +_;
+ x = d3_geo_graticuleX(y0, y1, 90);
+ y = d3_geo_graticuleY(x0, x1, precision);
+ X = d3_geo_graticuleX(Y0, Y1, 90);
+ Y = d3_geo_graticuleY(X0, X1, precision);
+ return graticule;
+ };
+ return graticule.majorExtent([ [ -180, -90 + ε ], [ 180, 90 - ε ] ]).minorExtent([ [ -180, -80 - ε ], [ 180, 80 + ε ] ]);
+ };
+ function d3_geo_graticuleX(y0, y1, dy) {
+ var y = d3.range(y0, y1 - ε, dy).concat(y1);
+ return function(x) {
+ return y.map(function(y) {
+ return [ x, y ];
+ });
+ };
+ }
+ function d3_geo_graticuleY(x0, x1, dx) {
+ var x = d3.range(x0, x1 - ε, dx).concat(x1);
+ return function(y) {
+ return x.map(function(x) {
+ return [ x, y ];
+ });
+ };
+ }
+ function d3_source(d) {
+ return d.source;
+ }
+ function d3_target(d) {
+ return d.target;
+ }
+ d3.geo.greatArc = function() {
+ var source = d3_source, source_, target = d3_target, target_;
+ function greatArc() {
+ return {
+ type: "LineString",
+ coordinates: [ source_ || source.apply(this, arguments), target_ || target.apply(this, arguments) ]
+ };
+ }
+ greatArc.distance = function() {
+ return d3.geo.distance(source_ || source.apply(this, arguments), target_ || target.apply(this, arguments));
+ };
+ greatArc.source = function(_) {
+ if (!arguments.length) return source;
+ source = _, source_ = typeof _ === "function" ? null : _;
+ return greatArc;
+ };
+ greatArc.target = function(_) {
+ if (!arguments.length) return target;
+ target = _, target_ = typeof _ === "function" ? null : _;
+ return greatArc;
+ };
+ greatArc.precision = function() {
+ return arguments.length ? greatArc : 0;
+ };
+ return greatArc;
+ };
+ d3.geo.interpolate = function(source, target) {
+ return d3_geo_interpolate(source[0] * d3_radians, source[1] * d3_radians, target[0] * d3_radians, target[1] * d3_radians);
+ };
+ function d3_geo_interpolate(x0, y0, x1, y1) {
+ var cy0 = Math.cos(y0), sy0 = Math.sin(y0), cy1 = Math.cos(y1), sy1 = Math.sin(y1), kx0 = cy0 * Math.cos(x0), ky0 = cy0 * Math.sin(x0), kx1 = cy1 * Math.cos(x1), ky1 = cy1 * Math.sin(x1), d = 2 * Math.asin(Math.sqrt(d3_haversin(y1 - y0) + cy0 * cy1 * d3_haversin(x1 - x0))), k = 1 / Math.sin(d);
+ var interpolate = d ? function(t) {
+ var B = Math.sin(t *= d) * k, A = Math.sin(d - t) * k, x = A * kx0 + B * kx1, y = A * ky0 + B * ky1, z = A * sy0 + B * sy1;
+ return [ Math.atan2(y, x) * d3_degrees, Math.atan2(z, Math.sqrt(x * x + y * y)) * d3_degrees ];
+ } : function() {
+ return [ x0 * d3_degrees, y0 * d3_degrees ];
+ };
+ interpolate.distance = d;
+ return interpolate;
+ }
+ d3.geo.length = function(object) {
+ d3_geo_lengthSum = 0;
+ d3.geo.stream(object, d3_geo_length);
+ return d3_geo_lengthSum;
+ };
+ var d3_geo_lengthSum;
+ var d3_geo_length = {
+ sphere: d3_noop,
+ point: d3_noop,
+ lineStart: d3_geo_lengthLineStart,
+ lineEnd: d3_noop,
+ polygonStart: d3_noop,
+ polygonEnd: d3_noop
+ };
+ function d3_geo_lengthLineStart() {
+ var λ0, sinφ0, cosφ0;
+ d3_geo_length.point = function(λ, φ) {
+ λ0 = λ * d3_radians, sinφ0 = Math.sin(φ *= d3_radians), cosφ0 = Math.cos(φ);
+ d3_geo_length.point = nextPoint;
+ };
+ d3_geo_length.lineEnd = function() {
+ d3_geo_length.point = d3_geo_length.lineEnd = d3_noop;
+ };
+ function nextPoint(λ, φ) {
+ var sinφ = Math.sin(φ *= d3_radians), cosφ = Math.cos(φ), t = abs((λ *= d3_radians) - λ0), cosΔλ = Math.cos(t);
+ d3_geo_lengthSum += Math.atan2(Math.sqrt((t = cosφ * Math.sin(t)) * t + (t = cosφ0 * sinφ - sinφ0 * cosφ * cosΔλ) * t), sinφ0 * sinφ + cosφ0 * cosφ * cosΔλ);
+ λ0 = λ, sinφ0 = sinφ, cosφ0 = cosφ;
+ }
+ }
+ function d3_geo_azimuthal(scale, angle) {
+ function azimuthal(λ, φ) {
+ var cosλ = Math.cos(λ), cosφ = Math.cos(φ), k = scale(cosλ * cosφ);
+ return [ k * cosφ * Math.sin(λ), k * Math.sin(φ) ];
+ }
+ azimuthal.invert = function(x, y) {
+ var ρ = Math.sqrt(x * x + y * y), c = angle(ρ), sinc = Math.sin(c), cosc = Math.cos(c);
+ return [ Math.atan2(x * sinc, ρ * cosc), Math.asin(ρ && y * sinc / ρ) ];
+ };
+ return azimuthal;
+ }
+ var d3_geo_azimuthalEqualArea = d3_geo_azimuthal(function(cosλcosφ) {
+ return Math.sqrt(2 / (1 + cosλcosφ));
+ }, function(ρ) {
+ return 2 * Math.asin(ρ / 2);
+ });
+ (d3.geo.azimuthalEqualArea = function() {
+ return d3_geo_projection(d3_geo_azimuthalEqualArea);
+ }).raw = d3_geo_azimuthalEqualArea;
+ var d3_geo_azimuthalEquidistant = d3_geo_azimuthal(function(cosλcosφ) {
+ var c = Math.acos(cosλcosφ);
+ return c && c / Math.sin(c);
+ }, d3_identity);
+ (d3.geo.azimuthalEquidistant = function() {
+ return d3_geo_projection(d3_geo_azimuthalEquidistant);
+ }).raw = d3_geo_azimuthalEquidistant;
+ function d3_geo_conicConformal(φ0, φ1) {
+ var cosφ0 = Math.cos(φ0), t = function(φ) {
+ return Math.tan(π / 4 + φ / 2);
+ }, n = φ0 === φ1 ? Math.sin(φ0) : Math.log(cosφ0 / Math.cos(φ1)) / Math.log(t(φ1) / t(φ0)), F = cosφ0 * Math.pow(t(φ0), n) / n;
+ if (!n) return d3_geo_mercator;
+ function forward(λ, φ) {
+ if (F > 0) {
+ if (φ < -halfπ + ε) φ = -halfπ + ε;
+ } else {
+ if (φ > halfπ - ε) φ = halfπ - ε;
+ }
+ var ρ = F / Math.pow(t(φ), n);
+ return [ ρ * Math.sin(n * λ), F - ρ * Math.cos(n * λ) ];
+ }
+ forward.invert = function(x, y) {
+ var ρ0_y = F - y, ρ = d3_sgn(n) * Math.sqrt(x * x + ρ0_y * ρ0_y);
+ return [ Math.atan2(x, ρ0_y) / n, 2 * Math.atan(Math.pow(F / ρ, 1 / n)) - halfπ ];
+ };
+ return forward;
+ }
+ (d3.geo.conicConformal = function() {
+ return d3_geo_conic(d3_geo_conicConformal);
+ }).raw = d3_geo_conicConformal;
+ function d3_geo_conicEquidistant(φ0, φ1) {
+ var cosφ0 = Math.cos(φ0), n = φ0 === φ1 ? Math.sin(φ0) : (cosφ0 - Math.cos(φ1)) / (φ1 - φ0), G = cosφ0 / n + φ0;
+ if (abs(n) < ε) return d3_geo_equirectangular;
+ function forward(λ, φ) {
+ var ρ = G - φ;
+ return [ ρ * Math.sin(n * λ), G - ρ * Math.cos(n * λ) ];
+ }
+ forward.invert = function(x, y) {
+ var ρ0_y = G - y;
+ return [ Math.atan2(x, ρ0_y) / n, G - d3_sgn(n) * Math.sqrt(x * x + ρ0_y * ρ0_y) ];
+ };
+ return forward;
+ }
+ (d3.geo.conicEquidistant = function() {
+ return d3_geo_conic(d3_geo_conicEquidistant);
+ }).raw = d3_geo_conicEquidistant;
+ var d3_geo_gnomonic = d3_geo_azimuthal(function(cosλcosφ) {
+ return 1 / cosλcosφ;
+ }, Math.atan);
+ (d3.geo.gnomonic = function() {
+ return d3_geo_projection(d3_geo_gnomonic);
+ }).raw = d3_geo_gnomonic;
+ function d3_geo_mercator(λ, φ) {
+ return [ λ, Math.log(Math.tan(π / 4 + φ / 2)) ];
+ }
+ d3_geo_mercator.invert = function(x, y) {
+ return [ x, 2 * Math.atan(Math.exp(y)) - halfπ ];
+ };
+ function d3_geo_mercatorProjection(project) {
+ var m = d3_geo_projection(project), scale = m.scale, translate = m.translate, clipExtent = m.clipExtent, clipAuto;
+ m.scale = function() {
+ var v = scale.apply(m, arguments);
+ return v === m ? clipAuto ? m.clipExtent(null) : m : v;
+ };
+ m.translate = function() {
+ var v = translate.apply(m, arguments);
+ return v === m ? clipAuto ? m.clipExtent(null) : m : v;
+ };
+ m.clipExtent = function(_) {
+ var v = clipExtent.apply(m, arguments);
+ if (v === m) {
+ if (clipAuto = _ == null) {
+ var k = π * scale(), t = translate();
+ clipExtent([ [ t[0] - k, t[1] - k ], [ t[0] + k, t[1] + k ] ]);
+ }
+ } else if (clipAuto) {
+ v = null;
+ }
+ return v;
+ };
+ return m.clipExtent(null);
+ }
+ (d3.geo.mercator = function() {
+ return d3_geo_mercatorProjection(d3_geo_mercator);
+ }).raw = d3_geo_mercator;
+ var d3_geo_orthographic = d3_geo_azimuthal(function() {
+ return 1;
+ }, Math.asin);
+ (d3.geo.orthographic = function() {
+ return d3_geo_projection(d3_geo_orthographic);
+ }).raw = d3_geo_orthographic;
+ var d3_geo_stereographic = d3_geo_azimuthal(function(cosλcosφ) {
+ return 1 / (1 + cosλcosφ);
+ }, function(ρ) {
+ return 2 * Math.atan(ρ);
+ });
+ (d3.geo.stereographic = function() {
+ return d3_geo_projection(d3_geo_stereographic);
+ }).raw = d3_geo_stereographic;
+ function d3_geo_transverseMercator(λ, φ) {
+ return [ Math.log(Math.tan(π / 4 + φ / 2)), -λ ];
+ }
+ d3_geo_transverseMercator.invert = function(x, y) {
+ return [ -y, 2 * Math.atan(Math.exp(x)) - halfπ ];
+ };
+ (d3.geo.transverseMercator = function() {
+ var projection = d3_geo_mercatorProjection(d3_geo_transverseMercator), center = projection.center, rotate = projection.rotate;
+ projection.center = function(_) {
+ return _ ? center([ -_[1], _[0] ]) : (_ = center(), [ _[1], -_[0] ]);
+ };
+ projection.rotate = function(_) {
+ return _ ? rotate([ _[0], _[1], _.length > 2 ? _[2] + 90 : 90 ]) : (_ = rotate(),
+ [ _[0], _[1], _[2] - 90 ]);
+ };
+ return rotate([ 0, 0, 90 ]);
+ }).raw = d3_geo_transverseMercator;
+ d3.geom = {};
+ function d3_geom_pointX(d) {
+ return d[0];
+ }
+ function d3_geom_pointY(d) {
+ return d[1];
+ }
+ d3.geom.hull = function(vertices) {
+ var x = d3_geom_pointX, y = d3_geom_pointY;
+ if (arguments.length) return hull(vertices);
+ function hull(data) {
+ if (data.length < 3) return [];
+ var fx = d3_functor(x), fy = d3_functor(y), i, n = data.length, points = [], flippedPoints = [];
+ for (i = 0; i < n; i++) {
+ points.push([ +fx.call(this, data[i], i), +fy.call(this, data[i], i), i ]);
+ }
+ points.sort(d3_geom_hullOrder);
+ for (i = 0; i < n; i++) flippedPoints.push([ points[i][0], -points[i][1] ]);
+ var upper = d3_geom_hullUpper(points), lower = d3_geom_hullUpper(flippedPoints);
+ var skipLeft = lower[0] === upper[0], skipRight = lower[lower.length - 1] === upper[upper.length - 1], polygon = [];
+ for (i = upper.length - 1; i >= 0; --i) polygon.push(data[points[upper[i]][2]]);
+ for (i = +skipLeft; i < lower.length - skipRight; ++i) polygon.push(data[points[lower[i]][2]]);
+ return polygon;
+ }
+ hull.x = function(_) {
+ return arguments.length ? (x = _, hull) : x;
+ };
+ hull.y = function(_) {
+ return arguments.length ? (y = _, hull) : y;
+ };
+ return hull;
+ };
+ function d3_geom_hullUpper(points) {
+ var n = points.length, hull = [ 0, 1 ], hs = 2;
+ for (var i = 2; i < n; i++) {
+ while (hs > 1 && d3_cross2d(points[hull[hs - 2]], points[hull[hs - 1]], points[i]) <= 0) --hs;
+ hull[hs++] = i;
+ }
+ return hull.slice(0, hs);
+ }
+ function d3_geom_hullOrder(a, b) {
+ return a[0] - b[0] || a[1] - b[1];
+ }
+ d3.geom.polygon = function(coordinates) {
+ d3_subclass(coordinates, d3_geom_polygonPrototype);
+ return coordinates;
+ };
+ var d3_geom_polygonPrototype = d3.geom.polygon.prototype = [];
+ d3_geom_polygonPrototype.area = function() {
+ var i = -1, n = this.length, a, b = this[n - 1], area = 0;
+ while (++i < n) {
+ a = b;
+ b = this[i];
+ area += a[1] * b[0] - a[0] * b[1];
+ }
+ return area * .5;
+ };
+ d3_geom_polygonPrototype.centroid = function(k) {
+ var i = -1, n = this.length, x = 0, y = 0, a, b = this[n - 1], c;
+ if (!arguments.length) k = -1 / (6 * this.area());
+ while (++i < n) {
+ a = b;
+ b = this[i];
+ c = a[0] * b[1] - b[0] * a[1];
+ x += (a[0] + b[0]) * c;
+ y += (a[1] + b[1]) * c;
+ }
+ return [ x * k, y * k ];
+ };
+ d3_geom_polygonPrototype.clip = function(subject) {
+ var input, closed = d3_geom_polygonClosed(subject), i = -1, n = this.length - d3_geom_polygonClosed(this), j, m, a = this[n - 1], b, c, d;
+ while (++i < n) {
+ input = subject.slice();
+ subject.length = 0;
+ b = this[i];
+ c = input[(m = input.length - closed) - 1];
+ j = -1;
+ while (++j < m) {
+ d = input[j];
+ if (d3_geom_polygonInside(d, a, b)) {
+ if (!d3_geom_polygonInside(c, a, b)) {
+ subject.push(d3_geom_polygonIntersect(c, d, a, b));
+ }
+ subject.push(d);
+ } else if (d3_geom_polygonInside(c, a, b)) {
+ subject.push(d3_geom_polygonIntersect(c, d, a, b));
+ }
+ c = d;
+ }
+ if (closed) subject.push(subject[0]);
+ a = b;
+ }
+ return subject;
+ };
+ function d3_geom_polygonInside(p, a, b) {
+ return (b[0] - a[0]) * (p[1] - a[1]) < (b[1] - a[1]) * (p[0] - a[0]);
+ }
+ function d3_geom_polygonIntersect(c, d, a, b) {
+ var x1 = c[0], x3 = a[0], x21 = d[0] - x1, x43 = b[0] - x3, y1 = c[1], y3 = a[1], y21 = d[1] - y1, y43 = b[1] - y3, ua = (x43 * (y1 - y3) - y43 * (x1 - x3)) / (y43 * x21 - x43 * y21);
+ return [ x1 + ua * x21, y1 + ua * y21 ];
+ }
+ function d3_geom_polygonClosed(coordinates) {
+ var a = coordinates[0], b = coordinates[coordinates.length - 1];
+ return !(a[0] - b[0] || a[1] - b[1]);
+ }
+ var d3_geom_voronoiEdges, d3_geom_voronoiCells, d3_geom_voronoiBeaches, d3_geom_voronoiBeachPool = [], d3_geom_voronoiFirstCircle, d3_geom_voronoiCircles, d3_geom_voronoiCirclePool = [];
+ function d3_geom_voronoiBeach() {
+ d3_geom_voronoiRedBlackNode(this);
+ this.edge = this.site = this.circle = null;
+ }
+ function d3_geom_voronoiCreateBeach(site) {
+ var beach = d3_geom_voronoiBeachPool.pop() || new d3_geom_voronoiBeach();
+ beach.site = site;
+ return beach;
+ }
+ function d3_geom_voronoiDetachBeach(beach) {
+ d3_geom_voronoiDetachCircle(beach);
+ d3_geom_voronoiBeaches.remove(beach);
+ d3_geom_voronoiBeachPool.push(beach);
+ d3_geom_voronoiRedBlackNode(beach);
+ }
+ function d3_geom_voronoiRemoveBeach(beach) {
+ var circle = beach.circle, x = circle.x, y = circle.cy, vertex = {
+ x: x,
+ y: y
+ }, previous = beach.P, next = beach.N, disappearing = [ beach ];
+ d3_geom_voronoiDetachBeach(beach);
+ var lArc = previous;
+ while (lArc.circle && abs(x - lArc.circle.x) < ε && abs(y - lArc.circle.cy) < ε) {
+ previous = lArc.P;
+ disappearing.unshift(lArc);
+ d3_geom_voronoiDetachBeach(lArc);
+ lArc = previous;
+ }
+ disappearing.unshift(lArc);
+ d3_geom_voronoiDetachCircle(lArc);
+ var rArc = next;
+ while (rArc.circle && abs(x - rArc.circle.x) < ε && abs(y - rArc.circle.cy) < ε) {
+ next = rArc.N;
+ disappearing.push(rArc);
+ d3_geom_voronoiDetachBeach(rArc);
+ rArc = next;
+ }
+ disappearing.push(rArc);
+ d3_geom_voronoiDetachCircle(rArc);
+ var nArcs = disappearing.length, iArc;
+ for (iArc = 1; iArc < nArcs; ++iArc) {
+ rArc = disappearing[iArc];
+ lArc = disappearing[iArc - 1];
+ d3_geom_voronoiSetEdgeEnd(rArc.edge, lArc.site, rArc.site, vertex);
+ }
+ lArc = disappearing[0];
+ rArc = disappearing[nArcs - 1];
+ rArc.edge = d3_geom_voronoiCreateEdge(lArc.site, rArc.site, null, vertex);
+ d3_geom_voronoiAttachCircle(lArc);
+ d3_geom_voronoiAttachCircle(rArc);
+ }
+ function d3_geom_voronoiAddBeach(site) {
+ var x = site.x, directrix = site.y, lArc, rArc, dxl, dxr, node = d3_geom_voronoiBeaches._;
+ while (node) {
+ dxl = d3_geom_voronoiLeftBreakPoint(node, directrix) - x;
+ if (dxl > ε) node = node.L; else {
+ dxr = x - d3_geom_voronoiRightBreakPoint(node, directrix);
+ if (dxr > ε) {
+ if (!node.R) {
+ lArc = node;
+ break;
+ }
+ node = node.R;
+ } else {
+ if (dxl > -ε) {
+ lArc = node.P;
+ rArc = node;
+ } else if (dxr > -ε) {
+ lArc = node;
+ rArc = node.N;
+ } else {
+ lArc = rArc = node;
+ }
+ break;
+ }
+ }
+ }
+ var newArc = d3_geom_voronoiCreateBeach(site);
+ d3_geom_voronoiBeaches.insert(lArc, newArc);
+ if (!lArc && !rArc) return;
+ if (lArc === rArc) {
+ d3_geom_voronoiDetachCircle(lArc);
+ rArc = d3_geom_voronoiCreateBeach(lArc.site);
+ d3_geom_voronoiBeaches.insert(newArc, rArc);
+ newArc.edge = rArc.edge = d3_geom_voronoiCreateEdge(lArc.site, newArc.site);
+ d3_geom_voronoiAttachCircle(lArc);
+ d3_geom_voronoiAttachCircle(rArc);
+ return;
+ }
+ if (!rArc) {
+ newArc.edge = d3_geom_voronoiCreateEdge(lArc.site, newArc.site);
+ return;
+ }
+ d3_geom_voronoiDetachCircle(lArc);
+ d3_geom_voronoiDetachCircle(rArc);
+ var lSite = lArc.site, ax = lSite.x, ay = lSite.y, bx = site.x - ax, by = site.y - ay, rSite = rArc.site, cx = rSite.x - ax, cy = rSite.y - ay, d = 2 * (bx * cy - by * cx), hb = bx * bx + by * by, hc = cx * cx + cy * cy, vertex = {
+ x: (cy * hb - by * hc) / d + ax,
+ y: (bx * hc - cx * hb) / d + ay
+ };
+ d3_geom_voronoiSetEdgeEnd(rArc.edge, lSite, rSite, vertex);
+ newArc.edge = d3_geom_voronoiCreateEdge(lSite, site, null, vertex);
+ rArc.edge = d3_geom_voronoiCreateEdge(site, rSite, null, vertex);
+ d3_geom_voronoiAttachCircle(lArc);
+ d3_geom_voronoiAttachCircle(rArc);
+ }
+ function d3_geom_voronoiLeftBreakPoint(arc, directrix) {
+ var site = arc.site, rfocx = site.x, rfocy = site.y, pby2 = rfocy - directrix;
+ if (!pby2) return rfocx;
+ var lArc = arc.P;
+ if (!lArc) return -Infinity;
+ site = lArc.site;
+ var lfocx = site.x, lfocy = site.y, plby2 = lfocy - directrix;
+ if (!plby2) return lfocx;
+ var hl = lfocx - rfocx, aby2 = 1 / pby2 - 1 / plby2, b = hl / plby2;
+ if (aby2) return (-b + Math.sqrt(b * b - 2 * aby2 * (hl * hl / (-2 * plby2) - lfocy + plby2 / 2 + rfocy - pby2 / 2))) / aby2 + rfocx;
+ return (rfocx + lfocx) / 2;
+ }
+ function d3_geom_voronoiRightBreakPoint(arc, directrix) {
+ var rArc = arc.N;
+ if (rArc) return d3_geom_voronoiLeftBreakPoint(rArc, directrix);
+ var site = arc.site;
+ return site.y === directrix ? site.x : Infinity;
+ }
+ function d3_geom_voronoiCell(site) {
+ this.site = site;
+ this.edges = [];
+ }
+ d3_geom_voronoiCell.prototype.prepare = function() {
+ var halfEdges = this.edges, iHalfEdge = halfEdges.length, edge;
+ while (iHalfEdge--) {
+ edge = halfEdges[iHalfEdge].edge;
+ if (!edge.b || !edge.a) halfEdges.splice(iHalfEdge, 1);
+ }
+ halfEdges.sort(d3_geom_voronoiHalfEdgeOrder);
+ return halfEdges.length;
+ };
+ function d3_geom_voronoiCloseCells(extent) {
+ var x0 = extent[0][0], x1 = extent[1][0], y0 = extent[0][1], y1 = extent[1][1], x2, y2, x3, y3, cells = d3_geom_voronoiCells, iCell = cells.length, cell, iHalfEdge, halfEdges, nHalfEdges, start, end;
+ while (iCell--) {
+ cell = cells[iCell];
+ if (!cell || !cell.prepare()) continue;
+ halfEdges = cell.edges;
+ nHalfEdges = halfEdges.length;
+ iHalfEdge = 0;
+ while (iHalfEdge < nHalfEdges) {
+ end = halfEdges[iHalfEdge].end(), x3 = end.x, y3 = end.y;
+ start = halfEdges[++iHalfEdge % nHalfEdges].start(), x2 = start.x, y2 = start.y;
+ if (abs(x3 - x2) > ε || abs(y3 - y2) > ε) {
+ halfEdges.splice(iHalfEdge, 0, new d3_geom_voronoiHalfEdge(d3_geom_voronoiCreateBorderEdge(cell.site, end, abs(x3 - x0) < ε && y1 - y3 > ε ? {
+ x: x0,
+ y: abs(x2 - x0) < ε ? y2 : y1
+ } : abs(y3 - y1) < ε && x1 - x3 > ε ? {
+ x: abs(y2 - y1) < ε ? x2 : x1,
+ y: y1
+ } : abs(x3 - x1) < ε && y3 - y0 > ε ? {
+ x: x1,
+ y: abs(x2 - x1) < ε ? y2 : y0
+ } : abs(y3 - y0) < ε && x3 - x0 > ε ? {
+ x: abs(y2 - y0) < ε ? x2 : x0,
+ y: y0
+ } : null), cell.site, null));
+ ++nHalfEdges;
+ }
+ }
+ }
+ }
+ function d3_geom_voronoiHalfEdgeOrder(a, b) {
+ return b.angle - a.angle;
+ }
+ function d3_geom_voronoiCircle() {
+ d3_geom_voronoiRedBlackNode(this);
+ this.x = this.y = this.arc = this.site = this.cy = null;
+ }
+ function d3_geom_voronoiAttachCircle(arc) {
+ var lArc = arc.P, rArc = arc.N;
+ if (!lArc || !rArc) return;
+ var lSite = lArc.site, cSite = arc.site, rSite = rArc.site;
+ if (lSite === rSite) return;
+ var bx = cSite.x, by = cSite.y, ax = lSite.x - bx, ay = lSite.y - by, cx = rSite.x - bx, cy = rSite.y - by;
+ var d = 2 * (ax * cy - ay * cx);
+ if (d >= -ε2) return;
+ var ha = ax * ax + ay * ay, hc = cx * cx + cy * cy, x = (cy * ha - ay * hc) / d, y = (ax * hc - cx * ha) / d, cy = y + by;
+ var circle = d3_geom_voronoiCirclePool.pop() || new d3_geom_voronoiCircle();
+ circle.arc = arc;
+ circle.site = cSite;
+ circle.x = x + bx;
+ circle.y = cy + Math.sqrt(x * x + y * y);
+ circle.cy = cy;
+ arc.circle = circle;
+ var before = null, node = d3_geom_voronoiCircles._;
+ while (node) {
+ if (circle.y < node.y || circle.y === node.y && circle.x <= node.x) {
+ if (node.L) node = node.L; else {
+ before = node.P;
+ break;
+ }
+ } else {
+ if (node.R) node = node.R; else {
+ before = node;
+ break;
+ }
+ }
+ }
+ d3_geom_voronoiCircles.insert(before, circle);
+ if (!before) d3_geom_voronoiFirstCircle = circle;
+ }
+ function d3_geom_voronoiDetachCircle(arc) {
+ var circle = arc.circle;
+ if (circle) {
+ if (!circle.P) d3_geom_voronoiFirstCircle = circle.N;
+ d3_geom_voronoiCircles.remove(circle);
+ d3_geom_voronoiCirclePool.push(circle);
+ d3_geom_voronoiRedBlackNode(circle);
+ arc.circle = null;
+ }
+ }
+ function d3_geom_voronoiClipEdges(extent) {
+ var edges = d3_geom_voronoiEdges, clip = d3_geom_clipLine(extent[0][0], extent[0][1], extent[1][0], extent[1][1]), i = edges.length, e;
+ while (i--) {
+ e = edges[i];
+ if (!d3_geom_voronoiConnectEdge(e, extent) || !clip(e) || abs(e.a.x - e.b.x) < ε && abs(e.a.y - e.b.y) < ε) {
+ e.a = e.b = null;
+ edges.splice(i, 1);
+ }
+ }
+ }
+ function d3_geom_voronoiConnectEdge(edge, extent) {
+ var vb = edge.b;
+ if (vb) return true;
+ var va = edge.a, x0 = extent[0][0], x1 = extent[1][0], y0 = extent[0][1], y1 = extent[1][1], lSite = edge.l, rSite = edge.r, lx = lSite.x, ly = lSite.y, rx = rSite.x, ry = rSite.y, fx = (lx + rx) / 2, fy = (ly + ry) / 2, fm, fb;
+ if (ry === ly) {
+ if (fx < x0 || fx >= x1) return;
+ if (lx > rx) {
+ if (!va) va = {
+ x: fx,
+ y: y0
+ }; else if (va.y >= y1) return;
+ vb = {
+ x: fx,
+ y: y1
+ };
+ } else {
+ if (!va) va = {
+ x: fx,
+ y: y1
+ }; else if (va.y < y0) return;
+ vb = {
+ x: fx,
+ y: y0
+ };
+ }
+ } else {
+ fm = (lx - rx) / (ry - ly);
+ fb = fy - fm * fx;
+ if (fm < -1 || fm > 1) {
+ if (lx > rx) {
+ if (!va) va = {
+ x: (y0 - fb) / fm,
+ y: y0
+ }; else if (va.y >= y1) return;
+ vb = {
+ x: (y1 - fb) / fm,
+ y: y1
+ };
+ } else {
+ if (!va) va = {
+ x: (y1 - fb) / fm,
+ y: y1
+ }; else if (va.y < y0) return;
+ vb = {
+ x: (y0 - fb) / fm,
+ y: y0
+ };
+ }
+ } else {
+ if (ly < ry) {
+ if (!va) va = {
+ x: x0,
+ y: fm * x0 + fb
+ }; else if (va.x >= x1) return;
+ vb = {
+ x: x1,
+ y: fm * x1 + fb
+ };
+ } else {
+ if (!va) va = {
+ x: x1,
+ y: fm * x1 + fb
+ }; else if (va.x < x0) return;
+ vb = {
+ x: x0,
+ y: fm * x0 + fb
+ };
+ }
+ }
+ }
+ edge.a = va;
+ edge.b = vb;
+ return true;
+ }
+ function d3_geom_voronoiEdge(lSite, rSite) {
+ this.l = lSite;
+ this.r = rSite;
+ this.a = this.b = null;
+ }
+ function d3_geom_voronoiCreateEdge(lSite, rSite, va, vb) {
+ var edge = new d3_geom_voronoiEdge(lSite, rSite);
+ d3_geom_voronoiEdges.push(edge);
+ if (va) d3_geom_voronoiSetEdgeEnd(edge, lSite, rSite, va);
+ if (vb) d3_geom_voronoiSetEdgeEnd(edge, rSite, lSite, vb);
+ d3_geom_voronoiCells[lSite.i].edges.push(new d3_geom_voronoiHalfEdge(edge, lSite, rSite));
+ d3_geom_voronoiCells[rSite.i].edges.push(new d3_geom_voronoiHalfEdge(edge, rSite, lSite));
+ return edge;
+ }
+ function d3_geom_voronoiCreateBorderEdge(lSite, va, vb) {
+ var edge = new d3_geom_voronoiEdge(lSite, null);
+ edge.a = va;
+ edge.b = vb;
+ d3_geom_voronoiEdges.push(edge);
+ return edge;
+ }
+ function d3_geom_voronoiSetEdgeEnd(edge, lSite, rSite, vertex) {
+ if (!edge.a && !edge.b) {
+ edge.a = vertex;
+ edge.l = lSite;
+ edge.r = rSite;
+ } else if (edge.l === rSite) {
+ edge.b = vertex;
+ } else {
+ edge.a = vertex;
+ }
+ }
+ function d3_geom_voronoiHalfEdge(edge, lSite, rSite) {
+ var va = edge.a, vb = edge.b;
+ this.edge = edge;
+ this.site = lSite;
+ this.angle = rSite ? Math.atan2(rSite.y - lSite.y, rSite.x - lSite.x) : edge.l === lSite ? Math.atan2(vb.x - va.x, va.y - vb.y) : Math.atan2(va.x - vb.x, vb.y - va.y);
+ }
+ d3_geom_voronoiHalfEdge.prototype = {
+ start: function() {
+ return this.edge.l === this.site ? this.edge.a : this.edge.b;
+ },
+ end: function() {
+ return this.edge.l === this.site ? this.edge.b : this.edge.a;
+ }
+ };
+ function d3_geom_voronoiRedBlackTree() {
+ this._ = null;
+ }
+ function d3_geom_voronoiRedBlackNode(node) {
+ node.U = node.C = node.L = node.R = node.P = node.N = null;
+ }
+ d3_geom_voronoiRedBlackTree.prototype = {
+ insert: function(after, node) {
+ var parent, grandpa, uncle;
+ if (after) {
+ node.P = after;
+ node.N = after.N;
+ if (after.N) after.N.P = node;
+ after.N = node;
+ if (after.R) {
+ after = after.R;
+ while (after.L) after = after.L;
+ after.L = node;
+ } else {
+ after.R = node;
+ }
+ parent = after;
+ } else if (this._) {
+ after = d3_geom_voronoiRedBlackFirst(this._);
+ node.P = null;
+ node.N = after;
+ after.P = after.L = node;
+ parent = after;
+ } else {
+ node.P = node.N = null;
+ this._ = node;
+ parent = null;
+ }
+ node.L = node.R = null;
+ node.U = parent;
+ node.C = true;
+ after = node;
+ while (parent && parent.C) {
+ grandpa = parent.U;
+ if (parent === grandpa.L) {
+ uncle = grandpa.R;
+ if (uncle && uncle.C) {
+ parent.C = uncle.C = false;
+ grandpa.C = true;
+ after = grandpa;
+ } else {
+ if (after === parent.R) {
+ d3_geom_voronoiRedBlackRotateLeft(this, parent);
+ after = parent;
+ parent = after.U;
+ }
+ parent.C = false;
+ grandpa.C = true;
+ d3_geom_voronoiRedBlackRotateRight(this, grandpa);
+ }
+ } else {
+ uncle = grandpa.L;
+ if (uncle && uncle.C) {
+ parent.C = uncle.C = false;
+ grandpa.C = true;
+ after = grandpa;
+ } else {
+ if (after === parent.L) {
+ d3_geom_voronoiRedBlackRotateRight(this, parent);
+ after = parent;
+ parent = after.U;
+ }
+ parent.C = false;
+ grandpa.C = true;
+ d3_geom_voronoiRedBlackRotateLeft(this, grandpa);
+ }
+ }
+ parent = after.U;
+ }
+ this._.C = false;
+ },
+ remove: function(node) {
+ if (node.N) node.N.P = node.P;
+ if (node.P) node.P.N = node.N;
+ node.N = node.P = null;
+ var parent = node.U, sibling, left = node.L, right = node.R, next, red;
+ if (!left) next = right; else if (!right) next = left; else next = d3_geom_voronoiRedBlackFirst(right);
+ if (parent) {
+ if (parent.L === node) parent.L = next; else parent.R = next;
+ } else {
+ this._ = next;
+ }
+ if (left && right) {
+ red = next.C;
+ next.C = node.C;
+ next.L = left;
+ left.U = next;
+ if (next !== right) {
+ parent = next.U;
+ next.U = node.U;
+ node = next.R;
+ parent.L = node;
+ next.R = right;
+ right.U = next;
+ } else {
+ next.U = parent;
+ parent = next;
+ node = next.R;
+ }
+ } else {
+ red = node.C;
+ node = next;
+ }
+ if (node) node.U = parent;
+ if (red) return;
+ if (node && node.C) {
+ node.C = false;
+ return;
+ }
+ do {
+ if (node === this._) break;
+ if (node === parent.L) {
+ sibling = parent.R;
+ if (sibling.C) {
+ sibling.C = false;
+ parent.C = true;
+ d3_geom_voronoiRedBlackRotateLeft(this, parent);
+ sibling = parent.R;
+ }
+ if (sibling.L && sibling.L.C || sibling.R && sibling.R.C) {
+ if (!sibling.R || !sibling.R.C) {
+ sibling.L.C = false;
+ sibling.C = true;
+ d3_geom_voronoiRedBlackRotateRight(this, sibling);
+ sibling = parent.R;
+ }
+ sibling.C = parent.C;
+ parent.C = sibling.R.C = false;
+ d3_geom_voronoiRedBlackRotateLeft(this, parent);
+ node = this._;
+ break;
+ }
+ } else {
+ sibling = parent.L;
+ if (sibling.C) {
+ sibling.C = false;
+ parent.C = true;
+ d3_geom_voronoiRedBlackRotateRight(this, parent);
+ sibling = parent.L;
+ }
+ if (sibling.L && sibling.L.C || sibling.R && sibling.R.C) {
+ if (!sibling.L || !sibling.L.C) {
+ sibling.R.C = false;
+ sibling.C = true;
+ d3_geom_voronoiRedBlackRotateLeft(this, sibling);
+ sibling = parent.L;
+ }
+ sibling.C = parent.C;
+ parent.C = sibling.L.C = false;
+ d3_geom_voronoiRedBlackRotateRight(this, parent);
+ node = this._;
+ break;
+ }
+ }
+ sibling.C = true;
+ node = parent;
+ parent = parent.U;
+ } while (!node.C);
+ if (node) node.C = false;
+ }
+ };
+ function d3_geom_voronoiRedBlackRotateLeft(tree, node) {
+ var p = node, q = node.R, parent = p.U;
+ if (parent) {
+ if (parent.L === p) parent.L = q; else parent.R = q;
+ } else {
+ tree._ = q;
+ }
+ q.U = parent;
+ p.U = q;
+ p.R = q.L;
+ if (p.R) p.R.U = p;
+ q.L = p;
+ }
+ function d3_geom_voronoiRedBlackRotateRight(tree, node) {
+ var p = node, q = node.L, parent = p.U;
+ if (parent) {
+ if (parent.L === p) parent.L = q; else parent.R = q;
+ } else {
+ tree._ = q;
+ }
+ q.U = parent;
+ p.U = q;
+ p.L = q.R;
+ if (p.L) p.L.U = p;
+ q.R = p;
+ }
+ function d3_geom_voronoiRedBlackFirst(node) {
+ while (node.L) node = node.L;
+ return node;
+ }
+ function d3_geom_voronoi(sites, bbox) {
+ var site = sites.sort(d3_geom_voronoiVertexOrder).pop(), x0, y0, circle;
+ d3_geom_voronoiEdges = [];
+ d3_geom_voronoiCells = new Array(sites.length);
+ d3_geom_voronoiBeaches = new d3_geom_voronoiRedBlackTree();
+ d3_geom_voronoiCircles = new d3_geom_voronoiRedBlackTree();
+ while (true) {
+ circle = d3_geom_voronoiFirstCircle;
+ if (site && (!circle || site.y < circle.y || site.y === circle.y && site.x < circle.x)) {
+ if (site.x !== x0 || site.y !== y0) {
+ d3_geom_voronoiCells[site.i] = new d3_geom_voronoiCell(site);
+ d3_geom_voronoiAddBeach(site);
+ x0 = site.x, y0 = site.y;
+ }
+ site = sites.pop();
+ } else if (circle) {
+ d3_geom_voronoiRemoveBeach(circle.arc);
+ } else {
+ break;
+ }
+ }
+ if (bbox) d3_geom_voronoiClipEdges(bbox), d3_geom_voronoiCloseCells(bbox);
+ var diagram = {
+ cells: d3_geom_voronoiCells,
+ edges: d3_geom_voronoiEdges
+ };
+ d3_geom_voronoiBeaches = d3_geom_voronoiCircles = d3_geom_voronoiEdges = d3_geom_voronoiCells = null;
+ return diagram;
+ }
+ function d3_geom_voronoiVertexOrder(a, b) {
+ return b.y - a.y || b.x - a.x;
+ }
+ d3.geom.voronoi = function(points) {
+ var x = d3_geom_pointX, y = d3_geom_pointY, fx = x, fy = y, clipExtent = d3_geom_voronoiClipExtent;
+ if (points) return voronoi(points);
+ function voronoi(data) {
+ var polygons = new Array(data.length), x0 = clipExtent[0][0], y0 = clipExtent[0][1], x1 = clipExtent[1][0], y1 = clipExtent[1][1];
+ d3_geom_voronoi(sites(data), clipExtent).cells.forEach(function(cell, i) {
+ var edges = cell.edges, site = cell.site, polygon = polygons[i] = edges.length ? edges.map(function(e) {
+ var s = e.start();
+ return [ s.x, s.y ];
+ }) : site.x >= x0 && site.x <= x1 && site.y >= y0 && site.y <= y1 ? [ [ x0, y1 ], [ x1, y1 ], [ x1, y0 ], [ x0, y0 ] ] : [];
+ polygon.point = data[i];
+ });
+ return polygons;
+ }
+ function sites(data) {
+ return data.map(function(d, i) {
+ return {
+ x: Math.round(fx(d, i) / ε) * ε,
+ y: Math.round(fy(d, i) / ε) * ε,
+ i: i
+ };
+ });
+ }
+ voronoi.links = function(data) {
+ return d3_geom_voronoi(sites(data)).edges.filter(function(edge) {
+ return edge.l && edge.r;
+ }).map(function(edge) {
+ return {
+ source: data[edge.l.i],
+ target: data[edge.r.i]
+ };
+ });
+ };
+ voronoi.triangles = function(data) {
+ var triangles = [];
+ d3_geom_voronoi(sites(data)).cells.forEach(function(cell, i) {
+ var site = cell.site, edges = cell.edges.sort(d3_geom_voronoiHalfEdgeOrder), j = -1, m = edges.length, e0, s0, e1 = edges[m - 1].edge, s1 = e1.l === site ? e1.r : e1.l;
+ while (++j < m) {
+ e0 = e1;
+ s0 = s1;
+ e1 = edges[j].edge;
+ s1 = e1.l === site ? e1.r : e1.l;
+ if (i < s0.i && i < s1.i && d3_geom_voronoiTriangleArea(site, s0, s1) < 0) {
+ triangles.push([ data[i], data[s0.i], data[s1.i] ]);
+ }
+ }
+ });
+ return triangles;
+ };
+ voronoi.x = function(_) {
+ return arguments.length ? (fx = d3_functor(x = _), voronoi) : x;
+ };
+ voronoi.y = function(_) {
+ return arguments.length ? (fy = d3_functor(y = _), voronoi) : y;
+ };
+ voronoi.clipExtent = function(_) {
+ if (!arguments.length) return clipExtent === d3_geom_voronoiClipExtent ? null : clipExtent;
+ clipExtent = _ == null ? d3_geom_voronoiClipExtent : _;
+ return voronoi;
+ };
+ voronoi.size = function(_) {
+ if (!arguments.length) return clipExtent === d3_geom_voronoiClipExtent ? null : clipExtent && clipExtent[1];
+ return voronoi.clipExtent(_ && [ [ 0, 0 ], _ ]);
+ };
+ return voronoi;
+ };
+ var d3_geom_voronoiClipExtent = [ [ -1e6, -1e6 ], [ 1e6, 1e6 ] ];
+ function d3_geom_voronoiTriangleArea(a, b, c) {
+ return (a.x - c.x) * (b.y - a.y) - (a.x - b.x) * (c.y - a.y);
+ }
+ d3.geom.delaunay = function(vertices) {
+ return d3.geom.voronoi().triangles(vertices);
+ };
+ d3.geom.quadtree = function(points, x1, y1, x2, y2) {
+ var x = d3_geom_pointX, y = d3_geom_pointY, compat;
+ if (compat = arguments.length) {
+ x = d3_geom_quadtreeCompatX;
+ y = d3_geom_quadtreeCompatY;
+ if (compat === 3) {
+ y2 = y1;
+ x2 = x1;
+ y1 = x1 = 0;
+ }
+ return quadtree(points);
+ }
+ function quadtree(data) {
+ var d, fx = d3_functor(x), fy = d3_functor(y), xs, ys, i, n, x1_, y1_, x2_, y2_;
+ if (x1 != null) {
+ x1_ = x1, y1_ = y1, x2_ = x2, y2_ = y2;
+ } else {
+ x2_ = y2_ = -(x1_ = y1_ = Infinity);
+ xs = [], ys = [];
+ n = data.length;
+ if (compat) for (i = 0; i < n; ++i) {
+ d = data[i];
+ if (d.x < x1_) x1_ = d.x;
+ if (d.y < y1_) y1_ = d.y;
+ if (d.x > x2_) x2_ = d.x;
+ if (d.y > y2_) y2_ = d.y;
+ xs.push(d.x);
+ ys.push(d.y);
+ } else for (i = 0; i < n; ++i) {
+ var x_ = +fx(d = data[i], i), y_ = +fy(d, i);
+ if (x_ < x1_) x1_ = x_;
+ if (y_ < y1_) y1_ = y_;
+ if (x_ > x2_) x2_ = x_;
+ if (y_ > y2_) y2_ = y_;
+ xs.push(x_);
+ ys.push(y_);
+ }
+ }
+ var dx = x2_ - x1_, dy = y2_ - y1_;
+ if (dx > dy) y2_ = y1_ + dx; else x2_ = x1_ + dy;
+ function insert(n, d, x, y, x1, y1, x2, y2) {
+ if (isNaN(x) || isNaN(y)) return;
+ if (n.leaf) {
+ var nx = n.x, ny = n.y;
+ if (nx != null) {
+ if (abs(nx - x) + abs(ny - y) < .01) {
+ insertChild(n, d, x, y, x1, y1, x2, y2);
+ } else {
+ var nPoint = n.point;
+ n.x = n.y = n.point = null;
+ insertChild(n, nPoint, nx, ny, x1, y1, x2, y2);
+ insertChild(n, d, x, y, x1, y1, x2, y2);
+ }
+ } else {
+ n.x = x, n.y = y, n.point = d;
+ }
+ } else {
+ insertChild(n, d, x, y, x1, y1, x2, y2);
+ }
+ }
+ function insertChild(n, d, x, y, x1, y1, x2, y2) {
+ var xm = (x1 + x2) * .5, ym = (y1 + y2) * .5, right = x >= xm, below = y >= ym, i = below << 1 | right;
+ n.leaf = false;
+ n = n.nodes[i] || (n.nodes[i] = d3_geom_quadtreeNode());
+ if (right) x1 = xm; else x2 = xm;
+ if (below) y1 = ym; else y2 = ym;
+ insert(n, d, x, y, x1, y1, x2, y2);
+ }
+ var root = d3_geom_quadtreeNode();
+ root.add = function(d) {
+ insert(root, d, +fx(d, ++i), +fy(d, i), x1_, y1_, x2_, y2_);
+ };
+ root.visit = function(f) {
+ d3_geom_quadtreeVisit(f, root, x1_, y1_, x2_, y2_);
+ };
+ root.find = function(point) {
+ return d3_geom_quadtreeFind(root, point[0], point[1], x1_, y1_, x2_, y2_);
+ };
+ i = -1;
+ if (x1 == null) {
+ while (++i < n) {
+ insert(root, data[i], xs[i], ys[i], x1_, y1_, x2_, y2_);
+ }
+ --i;
+ } else data.forEach(root.add);
+ xs = ys = data = d = null;
+ return root;
+ }
+ quadtree.x = function(_) {
+ return arguments.length ? (x = _, quadtree) : x;
+ };
+ quadtree.y = function(_) {
+ return arguments.length ? (y = _, quadtree) : y;
+ };
+ quadtree.extent = function(_) {
+ if (!arguments.length) return x1 == null ? null : [ [ x1, y1 ], [ x2, y2 ] ];
+ if (_ == null) x1 = y1 = x2 = y2 = null; else x1 = +_[0][0], y1 = +_[0][1], x2 = +_[1][0],
+ y2 = +_[1][1];
+ return quadtree;
+ };
+ quadtree.size = function(_) {
+ if (!arguments.length) return x1 == null ? null : [ x2 - x1, y2 - y1 ];
+ if (_ == null) x1 = y1 = x2 = y2 = null; else x1 = y1 = 0, x2 = +_[0], y2 = +_[1];
+ return quadtree;
+ };
+ return quadtree;
+ };
+ function d3_geom_quadtreeCompatX(d) {
+ return d.x;
+ }
+ function d3_geom_quadtreeCompatY(d) {
+ return d.y;
+ }
+ function d3_geom_quadtreeNode() {
+ return {
+ leaf: true,
+ nodes: [],
+ point: null,
+ x: null,
+ y: null
+ };
+ }
+ function d3_geom_quadtreeVisit(f, node, x1, y1, x2, y2) {
+ if (!f(node, x1, y1, x2, y2)) {
+ var sx = (x1 + x2) * .5, sy = (y1 + y2) * .5, children = node.nodes;
+ if (children[0]) d3_geom_quadtreeVisit(f, children[0], x1, y1, sx, sy);
+ if (children[1]) d3_geom_quadtreeVisit(f, children[1], sx, y1, x2, sy);
+ if (children[2]) d3_geom_quadtreeVisit(f, children[2], x1, sy, sx, y2);
+ if (children[3]) d3_geom_quadtreeVisit(f, children[3], sx, sy, x2, y2);
+ }
+ }
+ function d3_geom_quadtreeFind(root, x, y, x0, y0, x3, y3) {
+ var minDistance2 = Infinity, closestPoint;
+ (function find(node, x1, y1, x2, y2) {
+ if (x1 > x3 || y1 > y3 || x2 < x0 || y2 < y0) return;
+ if (point = node.point) {
+ var point, dx = x - node.x, dy = y - node.y, distance2 = dx * dx + dy * dy;
+ if (distance2 < minDistance2) {
+ var distance = Math.sqrt(minDistance2 = distance2);
+ x0 = x - distance, y0 = y - distance;
+ x3 = x + distance, y3 = y + distance;
+ closestPoint = point;
+ }
+ }
+ var children = node.nodes, xm = (x1 + x2) * .5, ym = (y1 + y2) * .5, right = x >= xm, below = y >= ym;
+ for (var i = below << 1 | right, j = i + 4; i < j; ++i) {
+ if (node = children[i & 3]) switch (i & 3) {
+ case 0:
+ find(node, x1, y1, xm, ym);
+ break;
+
+ case 1:
+ find(node, xm, y1, x2, ym);
+ break;
+
+ case 2:
+ find(node, x1, ym, xm, y2);
+ break;
+
+ case 3:
+ find(node, xm, ym, x2, y2);
+ break;
+ }
+ }
+ })(root, x0, y0, x3, y3);
+ return closestPoint;
+ }
+ d3.interpolateRgb = d3_interpolateRgb;
+ function d3_interpolateRgb(a, b) {
+ a = d3.rgb(a);
+ b = d3.rgb(b);
+ var ar = a.r, ag = a.g, ab = a.b, br = b.r - ar, bg = b.g - ag, bb = b.b - ab;
+ return function(t) {
+ return "#" + d3_rgb_hex(Math.round(ar + br * t)) + d3_rgb_hex(Math.round(ag + bg * t)) + d3_rgb_hex(Math.round(ab + bb * t));
+ };
+ }
+ d3.interpolateObject = d3_interpolateObject;
+ function d3_interpolateObject(a, b) {
+ var i = {}, c = {}, k;
+ for (k in a) {
+ if (k in b) {
+ i[k] = d3_interpolate(a[k], b[k]);
+ } else {
+ c[k] = a[k];
+ }
+ }
+ for (k in b) {
+ if (!(k in a)) {
+ c[k] = b[k];
+ }
+ }
+ return function(t) {
+ for (k in i) c[k] = i[k](t);
+ return c;
+ };
+ }
+ d3.interpolateNumber = d3_interpolateNumber;
+ function d3_interpolateNumber(a, b) {
+ a = +a, b = +b;
+ return function(t) {
+ return a * (1 - t) + b * t;
+ };
+ }
+ d3.interpolateString = d3_interpolateString;
+ function d3_interpolateString(a, b) {
+ var bi = d3_interpolate_numberA.lastIndex = d3_interpolate_numberB.lastIndex = 0, am, bm, bs, i = -1, s = [], q = [];
+ a = a + "", b = b + "";
+ while ((am = d3_interpolate_numberA.exec(a)) && (bm = d3_interpolate_numberB.exec(b))) {
+ if ((bs = bm.index) > bi) {
+ bs = b.slice(bi, bs);
+ if (s[i]) s[i] += bs; else s[++i] = bs;
+ }
+ if ((am = am[0]) === (bm = bm[0])) {
+ if (s[i]) s[i] += bm; else s[++i] = bm;
+ } else {
+ s[++i] = null;
+ q.push({
+ i: i,
+ x: d3_interpolateNumber(am, bm)
+ });
+ }
+ bi = d3_interpolate_numberB.lastIndex;
+ }
+ if (bi < b.length) {
+ bs = b.slice(bi);
+ if (s[i]) s[i] += bs; else s[++i] = bs;
+ }
+ return s.length < 2 ? q[0] ? (b = q[0].x, function(t) {
+ return b(t) + "";
+ }) : function() {
+ return b;
+ } : (b = q.length, function(t) {
+ for (var i = 0, o; i < b; ++i) s[(o = q[i]).i] = o.x(t);
+ return s.join("");
+ });
+ }
+ var d3_interpolate_numberA = /[-+]?(?:\d+\.?\d*|\.?\d+)(?:[eE][-+]?\d+)?/g, d3_interpolate_numberB = new RegExp(d3_interpolate_numberA.source, "g");
+ d3.interpolate = d3_interpolate;
+ function d3_interpolate(a, b) {
+ var i = d3.interpolators.length, f;
+ while (--i >= 0 && !(f = d3.interpolators[i](a, b))) ;
+ return f;
+ }
+ d3.interpolators = [ function(a, b) {
+ var t = typeof b;
+ return (t === "string" ? d3_rgb_names.has(b) || /^(#|rgb\(|hsl\()/.test(b) ? d3_interpolateRgb : d3_interpolateString : b instanceof d3_color ? d3_interpolateRgb : Array.isArray(b) ? d3_interpolateArray : t === "object" && isNaN(b) ? d3_interpolateObject : d3_interpolateNumber)(a, b);
+ } ];
+ d3.interpolateArray = d3_interpolateArray;
+ function d3_interpolateArray(a, b) {
+ var x = [], c = [], na = a.length, nb = b.length, n0 = Math.min(a.length, b.length), i;
+ for (i = 0; i < n0; ++i) x.push(d3_interpolate(a[i], b[i]));
+ for (;i < na; ++i) c[i] = a[i];
+ for (;i < nb; ++i) c[i] = b[i];
+ return function(t) {
+ for (i = 0; i < n0; ++i) c[i] = x[i](t);
+ return c;
+ };
+ }
+ var d3_ease_default = function() {
+ return d3_identity;
+ };
+ var d3_ease = d3.map({
+ linear: d3_ease_default,
+ poly: d3_ease_poly,
+ quad: function() {
+ return d3_ease_quad;
+ },
+ cubic: function() {
+ return d3_ease_cubic;
+ },
+ sin: function() {
+ return d3_ease_sin;
+ },
+ exp: function() {
+ return d3_ease_exp;
+ },
+ circle: function() {
+ return d3_ease_circle;
+ },
+ elastic: d3_ease_elastic,
+ back: d3_ease_back,
+ bounce: function() {
+ return d3_ease_bounce;
+ }
+ });
+ var d3_ease_mode = d3.map({
+ "in": d3_identity,
+ out: d3_ease_reverse,
+ "in-out": d3_ease_reflect,
+ "out-in": function(f) {
+ return d3_ease_reflect(d3_ease_reverse(f));
+ }
+ });
+ d3.ease = function(name) {
+ var i = name.indexOf("-"), t = i >= 0 ? name.slice(0, i) : name, m = i >= 0 ? name.slice(i + 1) : "in";
+ t = d3_ease.get(t) || d3_ease_default;
+ m = d3_ease_mode.get(m) || d3_identity;
+ return d3_ease_clamp(m(t.apply(null, d3_arraySlice.call(arguments, 1))));
+ };
+ function d3_ease_clamp(f) {
+ return function(t) {
+ return t <= 0 ? 0 : t >= 1 ? 1 : f(t);
+ };
+ }
+ function d3_ease_reverse(f) {
+ return function(t) {
+ return 1 - f(1 - t);
+ };
+ }
+ function d3_ease_reflect(f) {
+ return function(t) {
+ return .5 * (t < .5 ? f(2 * t) : 2 - f(2 - 2 * t));
+ };
+ }
+ function d3_ease_quad(t) {
+ return t * t;
+ }
+ function d3_ease_cubic(t) {
+ return t * t * t;
+ }
+ function d3_ease_cubicInOut(t) {
+ if (t <= 0) return 0;
+ if (t >= 1) return 1;
+ var t2 = t * t, t3 = t2 * t;
+ return 4 * (t < .5 ? t3 : 3 * (t - t2) + t3 - .75);
+ }
+ function d3_ease_poly(e) {
+ return function(t) {
+ return Math.pow(t, e);
+ };
+ }
+ function d3_ease_sin(t) {
+ return 1 - Math.cos(t * halfπ);
+ }
+ function d3_ease_exp(t) {
+ return Math.pow(2, 10 * (t - 1));
+ }
+ function d3_ease_circle(t) {
+ return 1 - Math.sqrt(1 - t * t);
+ }
+ function d3_ease_elastic(a, p) {
+ var s;
+ if (arguments.length < 2) p = .45;
+ if (arguments.length) s = p / τ * Math.asin(1 / a); else a = 1, s = p / 4;
+ return function(t) {
+ return 1 + a * Math.pow(2, -10 * t) * Math.sin((t - s) * τ / p);
+ };
+ }
+ function d3_ease_back(s) {
+ if (!s) s = 1.70158;
+ return function(t) {
+ return t * t * ((s + 1) * t - s);
+ };
+ }
+ function d3_ease_bounce(t) {
+ return t < 1 / 2.75 ? 7.5625 * t * t : t < 2 / 2.75 ? 7.5625 * (t -= 1.5 / 2.75) * t + .75 : t < 2.5 / 2.75 ? 7.5625 * (t -= 2.25 / 2.75) * t + .9375 : 7.5625 * (t -= 2.625 / 2.75) * t + .984375;
+ }
+ d3.interpolateHcl = d3_interpolateHcl;
+ function d3_interpolateHcl(a, b) {
+ a = d3.hcl(a);
+ b = d3.hcl(b);
+ var ah = a.h, ac = a.c, al = a.l, bh = b.h - ah, bc = b.c - ac, bl = b.l - al;
+ if (isNaN(bc)) bc = 0, ac = isNaN(ac) ? b.c : ac;
+ if (isNaN(bh)) bh = 0, ah = isNaN(ah) ? b.h : ah; else if (bh > 180) bh -= 360; else if (bh < -180) bh += 360;
+ return function(t) {
+ return d3_hcl_lab(ah + bh * t, ac + bc * t, al + bl * t) + "";
+ };
+ }
+ d3.interpolateHsl = d3_interpolateHsl;
+ function d3_interpolateHsl(a, b) {
+ a = d3.hsl(a);
+ b = d3.hsl(b);
+ var ah = a.h, as = a.s, al = a.l, bh = b.h - ah, bs = b.s - as, bl = b.l - al;
+ if (isNaN(bs)) bs = 0, as = isNaN(as) ? b.s : as;
+ if (isNaN(bh)) bh = 0, ah = isNaN(ah) ? b.h : ah; else if (bh > 180) bh -= 360; else if (bh < -180) bh += 360;
+ return function(t) {
+ return d3_hsl_rgb(ah + bh * t, as + bs * t, al + bl * t) + "";
+ };
+ }
+ d3.interpolateLab = d3_interpolateLab;
+ function d3_interpolateLab(a, b) {
+ a = d3.lab(a);
+ b = d3.lab(b);
+ var al = a.l, aa = a.a, ab = a.b, bl = b.l - al, ba = b.a - aa, bb = b.b - ab;
+ return function(t) {
+ return d3_lab_rgb(al + bl * t, aa + ba * t, ab + bb * t) + "";
+ };
+ }
+ d3.interpolateRound = d3_interpolateRound;
+ function d3_interpolateRound(a, b) {
+ b -= a;
+ return function(t) {
+ return Math.round(a + b * t);
+ };
+ }
+ d3.transform = function(string) {
+ var g = d3_document.createElementNS(d3.ns.prefix.svg, "g");
+ return (d3.transform = function(string) {
+ if (string != null) {
+ g.setAttribute("transform", string);
+ var t = g.transform.baseVal.consolidate();
+ }
+ return new d3_transform(t ? t.matrix : d3_transformIdentity);
+ })(string);
+ };
+ function d3_transform(m) {
+ var r0 = [ m.a, m.b ], r1 = [ m.c, m.d ], kx = d3_transformNormalize(r0), kz = d3_transformDot(r0, r1), ky = d3_transformNormalize(d3_transformCombine(r1, r0, -kz)) || 0;
+ if (r0[0] * r1[1] < r1[0] * r0[1]) {
+ r0[0] *= -1;
+ r0[1] *= -1;
+ kx *= -1;
+ kz *= -1;
+ }
+ this.rotate = (kx ? Math.atan2(r0[1], r0[0]) : Math.atan2(-r1[0], r1[1])) * d3_degrees;
+ this.translate = [ m.e, m.f ];
+ this.scale = [ kx, ky ];
+ this.skew = ky ? Math.atan2(kz, ky) * d3_degrees : 0;
+ }
+ d3_transform.prototype.toString = function() {
+ return "translate(" + this.translate + ")rotate(" + this.rotate + ")skewX(" + this.skew + ")scale(" + this.scale + ")";
+ };
+ function d3_transformDot(a, b) {
+ return a[0] * b[0] + a[1] * b[1];
+ }
+ function d3_transformNormalize(a) {
+ var k = Math.sqrt(d3_transformDot(a, a));
+ if (k) {
+ a[0] /= k;
+ a[1] /= k;
+ }
+ return k;
+ }
+ function d3_transformCombine(a, b, k) {
+ a[0] += k * b[0];
+ a[1] += k * b[1];
+ return a;
+ }
+ var d3_transformIdentity = {
+ a: 1,
+ b: 0,
+ c: 0,
+ d: 1,
+ e: 0,
+ f: 0
+ };
+ d3.interpolateTransform = d3_interpolateTransform;
+ function d3_interpolateTransform(a, b) {
+ var s = [], q = [], n, A = d3.transform(a), B = d3.transform(b), ta = A.translate, tb = B.translate, ra = A.rotate, rb = B.rotate, wa = A.skew, wb = B.skew, ka = A.scale, kb = B.scale;
+ if (ta[0] != tb[0] || ta[1] != tb[1]) {
+ s.push("translate(", null, ",", null, ")");
+ q.push({
+ i: 1,
+ x: d3_interpolateNumber(ta[0], tb[0])
+ }, {
+ i: 3,
+ x: d3_interpolateNumber(ta[1], tb[1])
+ });
+ } else if (tb[0] || tb[1]) {
+ s.push("translate(" + tb + ")");
+ } else {
+ s.push("");
+ }
+ if (ra != rb) {
+ if (ra - rb > 180) rb += 360; else if (rb - ra > 180) ra += 360;
+ q.push({
+ i: s.push(s.pop() + "rotate(", null, ")") - 2,
+ x: d3_interpolateNumber(ra, rb)
+ });
+ } else if (rb) {
+ s.push(s.pop() + "rotate(" + rb + ")");
+ }
+ if (wa != wb) {
+ q.push({
+ i: s.push(s.pop() + "skewX(", null, ")") - 2,
+ x: d3_interpolateNumber(wa, wb)
+ });
+ } else if (wb) {
+ s.push(s.pop() + "skewX(" + wb + ")");
+ }
+ if (ka[0] != kb[0] || ka[1] != kb[1]) {
+ n = s.push(s.pop() + "scale(", null, ",", null, ")");
+ q.push({
+ i: n - 4,
+ x: d3_interpolateNumber(ka[0], kb[0])
+ }, {
+ i: n - 2,
+ x: d3_interpolateNumber(ka[1], kb[1])
+ });
+ } else if (kb[0] != 1 || kb[1] != 1) {
+ s.push(s.pop() + "scale(" + kb + ")");
+ }
+ n = q.length;
+ return function(t) {
+ var i = -1, o;
+ while (++i < n) s[(o = q[i]).i] = o.x(t);
+ return s.join("");
+ };
+ }
+ function d3_uninterpolateNumber(a, b) {
+ b = (b -= a = +a) || 1 / b;
+ return function(x) {
+ return (x - a) / b;
+ };
+ }
+ function d3_uninterpolateClamp(a, b) {
+ b = (b -= a = +a) || 1 / b;
+ return function(x) {
+ return Math.max(0, Math.min(1, (x - a) / b));
+ };
+ }
+ d3.layout = {};
+ d3.layout.bundle = function() {
+ return function(links) {
+ var paths = [], i = -1, n = links.length;
+ while (++i < n) paths.push(d3_layout_bundlePath(links[i]));
+ return paths;
+ };
+ };
+ function d3_layout_bundlePath(link) {
+ var start = link.source, end = link.target, lca = d3_layout_bundleLeastCommonAncestor(start, end), points = [ start ];
+ while (start !== lca) {
+ start = start.parent;
+ points.push(start);
+ }
+ var k = points.length;
+ while (end !== lca) {
+ points.splice(k, 0, end);
+ end = end.parent;
+ }
+ return points;
+ }
+ function d3_layout_bundleAncestors(node) {
+ var ancestors = [], parent = node.parent;
+ while (parent != null) {
+ ancestors.push(node);
+ node = parent;
+ parent = parent.parent;
+ }
+ ancestors.push(node);
+ return ancestors;
+ }
+ function d3_layout_bundleLeastCommonAncestor(a, b) {
+ if (a === b) return a;
+ var aNodes = d3_layout_bundleAncestors(a), bNodes = d3_layout_bundleAncestors(b), aNode = aNodes.pop(), bNode = bNodes.pop(), sharedNode = null;
+ while (aNode === bNode) {
+ sharedNode = aNode;
+ aNode = aNodes.pop();
+ bNode = bNodes.pop();
+ }
+ return sharedNode;
+ }
+ d3.layout.chord = function() {
+ var chord = {}, chords, groups, matrix, n, padding = 0, sortGroups, sortSubgroups, sortChords;
+ function relayout() {
+ var subgroups = {}, groupSums = [], groupIndex = d3.range(n), subgroupIndex = [], k, x, x0, i, j;
+ chords = [];
+ groups = [];
+ k = 0, i = -1;
+ while (++i < n) {
+ x = 0, j = -1;
+ while (++j < n) {
+ x += matrix[i][j];
+ }
+ groupSums.push(x);
+ subgroupIndex.push(d3.range(n));
+ k += x;
+ }
+ if (sortGroups) {
+ groupIndex.sort(function(a, b) {
+ return sortGroups(groupSums[a], groupSums[b]);
+ });
+ }
+ if (sortSubgroups) {
+ subgroupIndex.forEach(function(d, i) {
+ d.sort(function(a, b) {
+ return sortSubgroups(matrix[i][a], matrix[i][b]);
+ });
+ });
+ }
+ k = (τ - padding * n) / k;
+ x = 0, i = -1;
+ while (++i < n) {
+ x0 = x, j = -1;
+ while (++j < n) {
+ var di = groupIndex[i], dj = subgroupIndex[di][j], v = matrix[di][dj], a0 = x, a1 = x += v * k;
+ subgroups[di + "-" + dj] = {
+ index: di,
+ subindex: dj,
+ startAngle: a0,
+ endAngle: a1,
+ value: v
+ };
+ }
+ groups[di] = {
+ index: di,
+ startAngle: x0,
+ endAngle: x,
+ value: (x - x0) / k
+ };
+ x += padding;
+ }
+ i = -1;
+ while (++i < n) {
+ j = i - 1;
+ while (++j < n) {
+ var source = subgroups[i + "-" + j], target = subgroups[j + "-" + i];
+ if (source.value || target.value) {
+ chords.push(source.value < target.value ? {
+ source: target,
+ target: source
+ } : {
+ source: source,
+ target: target
+ });
+ }
+ }
+ }
+ if (sortChords) resort();
+ }
+ function resort() {
+ chords.sort(function(a, b) {
+ return sortChords((a.source.value + a.target.value) / 2, (b.source.value + b.target.value) / 2);
+ });
+ }
+ chord.matrix = function(x) {
+ if (!arguments.length) return matrix;
+ n = (matrix = x) && matrix.length;
+ chords = groups = null;
+ return chord;
+ };
+ chord.padding = function(x) {
+ if (!arguments.length) return padding;
+ padding = x;
+ chords = groups = null;
+ return chord;
+ };
+ chord.sortGroups = function(x) {
+ if (!arguments.length) return sortGroups;
+ sortGroups = x;
+ chords = groups = null;
+ return chord;
+ };
+ chord.sortSubgroups = function(x) {
+ if (!arguments.length) return sortSubgroups;
+ sortSubgroups = x;
+ chords = null;
+ return chord;
+ };
+ chord.sortChords = function(x) {
+ if (!arguments.length) return sortChords;
+ sortChords = x;
+ if (chords) resort();
+ return chord;
+ };
+ chord.chords = function() {
+ if (!chords) relayout();
+ return chords;
+ };
+ chord.groups = function() {
+ if (!groups) relayout();
+ return groups;
+ };
+ return chord;
+ };
+ d3.layout.force = function() {
+ var force = {}, event = d3.dispatch("start", "tick", "end"), size = [ 1, 1 ], drag, alpha, friction = .9, linkDistance = d3_layout_forceLinkDistance, linkStrength = d3_layout_forceLinkStrength, charge = -30, chargeDistance2 = d3_layout_forceChargeDistance2, gravity = .1, theta2 = .64, nodes = [], links = [], distances, strengths, charges;
+ function repulse(node) {
+ return function(quad, x1, _, x2) {
+ if (quad.point !== node) {
+ var dx = quad.cx - node.x, dy = quad.cy - node.y, dw = x2 - x1, dn = dx * dx + dy * dy;
+ if (dw * dw / theta2 < dn) {
+ if (dn < chargeDistance2) {
+ var k = quad.charge / dn;
+ node.px -= dx * k;
+ node.py -= dy * k;
+ }
+ return true;
+ }
+ if (quad.point && dn && dn < chargeDistance2) {
+ var k = quad.pointCharge / dn;
+ node.px -= dx * k;
+ node.py -= dy * k;
+ }
+ }
+ return !quad.charge;
+ };
+ }
+ force.tick = function() {
+ if ((alpha *= .99) < .005) {
+ event.end({
+ type: "end",
+ alpha: alpha = 0
+ });
+ return true;
+ }
+ var n = nodes.length, m = links.length, q, i, o, s, t, l, k, x, y;
+ for (i = 0; i < m; ++i) {
+ o = links[i];
+ s = o.source;
+ t = o.target;
+ x = t.x - s.x;
+ y = t.y - s.y;
+ if (l = x * x + y * y) {
+ l = alpha * strengths[i] * ((l = Math.sqrt(l)) - distances[i]) / l;
+ x *= l;
+ y *= l;
+ t.x -= x * (k = s.weight / (t.weight + s.weight));
+ t.y -= y * k;
+ s.x += x * (k = 1 - k);
+ s.y += y * k;
+ }
+ }
+ if (k = alpha * gravity) {
+ x = size[0] / 2;
+ y = size[1] / 2;
+ i = -1;
+ if (k) while (++i < n) {
+ o = nodes[i];
+ o.x += (x - o.x) * k;
+ o.y += (y - o.y) * k;
+ }
+ }
+ if (charge) {
+ d3_layout_forceAccumulate(q = d3.geom.quadtree(nodes), alpha, charges);
+ i = -1;
+ while (++i < n) {
+ if (!(o = nodes[i]).fixed) {
+ q.visit(repulse(o));
+ }
+ }
+ }
+ i = -1;
+ while (++i < n) {
+ o = nodes[i];
+ if (o.fixed) {
+ o.x = o.px;
+ o.y = o.py;
+ } else {
+ o.x -= (o.px - (o.px = o.x)) * friction;
+ o.y -= (o.py - (o.py = o.y)) * friction;
+ }
+ }
+ event.tick({
+ type: "tick",
+ alpha: alpha
+ });
+ };
+ force.nodes = function(x) {
+ if (!arguments.length) return nodes;
+ nodes = x;
+ return force;
+ };
+ force.links = function(x) {
+ if (!arguments.length) return links;
+ links = x;
+ return force;
+ };
+ force.size = function(x) {
+ if (!arguments.length) return size;
+ size = x;
+ return force;
+ };
+ force.linkDistance = function(x) {
+ if (!arguments.length) return linkDistance;
+ linkDistance = typeof x === "function" ? x : +x;
+ return force;
+ };
+ force.distance = force.linkDistance;
+ force.linkStrength = function(x) {
+ if (!arguments.length) return linkStrength;
+ linkStrength = typeof x === "function" ? x : +x;
+ return force;
+ };
+ force.friction = function(x) {
+ if (!arguments.length) return friction;
+ friction = +x;
+ return force;
+ };
+ force.charge = function(x) {
+ if (!arguments.length) return charge;
+ charge = typeof x === "function" ? x : +x;
+ return force;
+ };
+ force.chargeDistance = function(x) {
+ if (!arguments.length) return Math.sqrt(chargeDistance2);
+ chargeDistance2 = x * x;
+ return force;
+ };
+ force.gravity = function(x) {
+ if (!arguments.length) return gravity;
+ gravity = +x;
+ return force;
+ };
+ force.theta = function(x) {
+ if (!arguments.length) return Math.sqrt(theta2);
+ theta2 = x * x;
+ return force;
+ };
+ force.alpha = function(x) {
+ if (!arguments.length) return alpha;
+ x = +x;
+ if (alpha) {
+ if (x > 0) alpha = x; else alpha = 0;
+ } else if (x > 0) {
+ event.start({
+ type: "start",
+ alpha: alpha = x
+ });
+ d3.timer(force.tick);
+ }
+ return force;
+ };
+ force.start = function() {
+ var i, n = nodes.length, m = links.length, w = size[0], h = size[1], neighbors, o;
+ for (i = 0; i < n; ++i) {
+ (o = nodes[i]).index = i;
+ o.weight = 0;
+ }
+ for (i = 0; i < m; ++i) {
+ o = links[i];
+ if (typeof o.source == "number") o.source = nodes[o.source];
+ if (typeof o.target == "number") o.target = nodes[o.target];
+ ++o.source.weight;
+ ++o.target.weight;
+ }
+ for (i = 0; i < n; ++i) {
+ o = nodes[i];
+ if (isNaN(o.x)) o.x = position("x", w);
+ if (isNaN(o.y)) o.y = position("y", h);
+ if (isNaN(o.px)) o.px = o.x;
+ if (isNaN(o.py)) o.py = o.y;
+ }
+ distances = [];
+ if (typeof linkDistance === "function") for (i = 0; i < m; ++i) distances[i] = +linkDistance.call(this, links[i], i); else for (i = 0; i < m; ++i) distances[i] = linkDistance;
+ strengths = [];
+ if (typeof linkStrength === "function") for (i = 0; i < m; ++i) strengths[i] = +linkStrength.call(this, links[i], i); else for (i = 0; i < m; ++i) strengths[i] = linkStrength;
+ charges = [];
+ if (typeof charge === "function") for (i = 0; i < n; ++i) charges[i] = +charge.call(this, nodes[i], i); else for (i = 0; i < n; ++i) charges[i] = charge;
+ function position(dimension, size) {
+ if (!neighbors) {
+ neighbors = new Array(n);
+ for (j = 0; j < n; ++j) {
+ neighbors[j] = [];
+ }
+ for (j = 0; j < m; ++j) {
+ var o = links[j];
+ neighbors[o.source.index].push(o.target);
+ neighbors[o.target.index].push(o.source);
+ }
+ }
+ var candidates = neighbors[i], j = -1, l = candidates.length, x;
+ while (++j < l) if (!isNaN(x = candidates[j][dimension])) return x;
+ return Math.random() * size;
+ }
+ return force.resume();
+ };
+ force.resume = function() {
+ return force.alpha(.1);
+ };
+ force.stop = function() {
+ return force.alpha(0);
+ };
+ force.drag = function() {
+ if (!drag) drag = d3.behavior.drag().origin(d3_identity).on("dragstart.force", d3_layout_forceDragstart).on("drag.force", dragmove).on("dragend.force", d3_layout_forceDragend);
+ if (!arguments.length) return drag;
+ this.on("mouseover.force", d3_layout_forceMouseover).on("mouseout.force", d3_layout_forceMouseout).call(drag);
+ };
+ function dragmove(d) {
+ d.px = d3.event.x, d.py = d3.event.y;
+ force.resume();
+ }
+ return d3.rebind(force, event, "on");
+ };
+ function d3_layout_forceDragstart(d) {
+ d.fixed |= 2;
+ }
+ function d3_layout_forceDragend(d) {
+ d.fixed &= ~6;
+ }
+ function d3_layout_forceMouseover(d) {
+ d.fixed |= 4;
+ d.px = d.x, d.py = d.y;
+ }
+ function d3_layout_forceMouseout(d) {
+ d.fixed &= ~4;
+ }
+ function d3_layout_forceAccumulate(quad, alpha, charges) {
+ var cx = 0, cy = 0;
+ quad.charge = 0;
+ if (!quad.leaf) {
+ var nodes = quad.nodes, n = nodes.length, i = -1, c;
+ while (++i < n) {
+ c = nodes[i];
+ if (c == null) continue;
+ d3_layout_forceAccumulate(c, alpha, charges);
+ quad.charge += c.charge;
+ cx += c.charge * c.cx;
+ cy += c.charge * c.cy;
+ }
+ }
+ if (quad.point) {
+ if (!quad.leaf) {
+ quad.point.x += Math.random() - .5;
+ quad.point.y += Math.random() - .5;
+ }
+ var k = alpha * charges[quad.point.index];
+ quad.charge += quad.pointCharge = k;
+ cx += k * quad.point.x;
+ cy += k * quad.point.y;
+ }
+ quad.cx = cx / quad.charge;
+ quad.cy = cy / quad.charge;
+ }
+ var d3_layout_forceLinkDistance = 20, d3_layout_forceLinkStrength = 1, d3_layout_forceChargeDistance2 = Infinity;
+ d3.layout.hierarchy = function() {
+ var sort = d3_layout_hierarchySort, children = d3_layout_hierarchyChildren, value = d3_layout_hierarchyValue;
+ function hierarchy(root) {
+ var stack = [ root ], nodes = [], node;
+ root.depth = 0;
+ while ((node = stack.pop()) != null) {
+ nodes.push(node);
+ if ((childs = children.call(hierarchy, node, node.depth)) && (n = childs.length)) {
+ var n, childs, child;
+ while (--n >= 0) {
+ stack.push(child = childs[n]);
+ child.parent = node;
+ child.depth = node.depth + 1;
+ }
+ if (value) node.value = 0;
+ node.children = childs;
+ } else {
+ if (value) node.value = +value.call(hierarchy, node, node.depth) || 0;
+ delete node.children;
+ }
+ }
+ d3_layout_hierarchyVisitAfter(root, function(node) {
+ var childs, parent;
+ if (sort && (childs = node.children)) childs.sort(sort);
+ if (value && (parent = node.parent)) parent.value += node.value;
+ });
+ return nodes;
+ }
+ hierarchy.sort = function(x) {
+ if (!arguments.length) return sort;
+ sort = x;
+ return hierarchy;
+ };
+ hierarchy.children = function(x) {
+ if (!arguments.length) return children;
+ children = x;
+ return hierarchy;
+ };
+ hierarchy.value = function(x) {
+ if (!arguments.length) return value;
+ value = x;
+ return hierarchy;
+ };
+ hierarchy.revalue = function(root) {
+ if (value) {
+ d3_layout_hierarchyVisitBefore(root, function(node) {
+ if (node.children) node.value = 0;
+ });
+ d3_layout_hierarchyVisitAfter(root, function(node) {
+ var parent;
+ if (!node.children) node.value = +value.call(hierarchy, node, node.depth) || 0;
+ if (parent = node.parent) parent.value += node.value;
+ });
+ }
+ return root;
+ };
+ return hierarchy;
+ };
+ function d3_layout_hierarchyRebind(object, hierarchy) {
+ d3.rebind(object, hierarchy, "sort", "children", "value");
+ object.nodes = object;
+ object.links = d3_layout_hierarchyLinks;
+ return object;
+ }
+ function d3_layout_hierarchyVisitBefore(node, callback) {
+ var nodes = [ node ];
+ while ((node = nodes.pop()) != null) {
+ callback(node);
+ if ((children = node.children) && (n = children.length)) {
+ var n, children;
+ while (--n >= 0) nodes.push(children[n]);
+ }
+ }
+ }
+ function d3_layout_hierarchyVisitAfter(node, callback) {
+ var nodes = [ node ], nodes2 = [];
+ while ((node = nodes.pop()) != null) {
+ nodes2.push(node);
+ if ((children = node.children) && (n = children.length)) {
+ var i = -1, n, children;
+ while (++i < n) nodes.push(children[i]);
+ }
+ }
+ while ((node = nodes2.pop()) != null) {
+ callback(node);
+ }
+ }
+ function d3_layout_hierarchyChildren(d) {
+ return d.children;
+ }
+ function d3_layout_hierarchyValue(d) {
+ return d.value;
+ }
+ function d3_layout_hierarchySort(a, b) {
+ return b.value - a.value;
+ }
+ function d3_layout_hierarchyLinks(nodes) {
+ return d3.merge(nodes.map(function(parent) {
+ return (parent.children || []).map(function(child) {
+ return {
+ source: parent,
+ target: child
+ };
+ });
+ }));
+ }
+ d3.layout.partition = function() {
+ var hierarchy = d3.layout.hierarchy(), size = [ 1, 1 ];
+ function position(node, x, dx, dy) {
+ var children = node.children;
+ node.x = x;
+ node.y = node.depth * dy;
+ node.dx = dx;
+ node.dy = dy;
+ if (children && (n = children.length)) {
+ var i = -1, n, c, d;
+ dx = node.value ? dx / node.value : 0;
+ while (++i < n) {
+ position(c = children[i], x, d = c.value * dx, dy);
+ x += d;
+ }
+ }
+ }
+ function depth(node) {
+ var children = node.children, d = 0;
+ if (children && (n = children.length)) {
+ var i = -1, n;
+ while (++i < n) d = Math.max(d, depth(children[i]));
+ }
+ return 1 + d;
+ }
+ function partition(d, i) {
+ var nodes = hierarchy.call(this, d, i);
+ position(nodes[0], 0, size[0], size[1] / depth(nodes[0]));
+ return nodes;
+ }
+ partition.size = function(x) {
+ if (!arguments.length) return size;
+ size = x;
+ return partition;
+ };
+ return d3_layout_hierarchyRebind(partition, hierarchy);
+ };
+ d3.layout.pie = function() {
+ var value = Number, sort = d3_layout_pieSortByValue, startAngle = 0, endAngle = τ, padAngle = 0;
+ function pie(data) {
+ var n = data.length, values = data.map(function(d, i) {
+ return +value.call(pie, d, i);
+ }), a = +(typeof startAngle === "function" ? startAngle.apply(this, arguments) : startAngle), da = (typeof endAngle === "function" ? endAngle.apply(this, arguments) : endAngle) - a, p = Math.min(Math.abs(da) / n, +(typeof padAngle === "function" ? padAngle.apply(this, arguments) : padAngle)), pa = p * (da < 0 ? -1 : 1), k = (da - n * pa) / d3.sum(values), index = d3.range(n), arcs = [], v;
+ if (sort != null) index.sort(sort === d3_layout_pieSortByValue ? function(i, j) {
+ return values[j] - values[i];
+ } : function(i, j) {
+ return sort(data[i], data[j]);
+ });
+ index.forEach(function(i) {
+ arcs[i] = {
+ data: data[i],
+ value: v = values[i],
+ startAngle: a,
+ endAngle: a += v * k + pa,
+ padAngle: p
+ };
+ });
+ return arcs;
+ }
+ pie.value = function(_) {
+ if (!arguments.length) return value;
+ value = _;
+ return pie;
+ };
+ pie.sort = function(_) {
+ if (!arguments.length) return sort;
+ sort = _;
+ return pie;
+ };
+ pie.startAngle = function(_) {
+ if (!arguments.length) return startAngle;
+ startAngle = _;
+ return pie;
+ };
+ pie.endAngle = function(_) {
+ if (!arguments.length) return endAngle;
+ endAngle = _;
+ return pie;
+ };
+ pie.padAngle = function(_) {
+ if (!arguments.length) return padAngle;
+ padAngle = _;
+ return pie;
+ };
+ return pie;
+ };
+ var d3_layout_pieSortByValue = {};
+ d3.layout.stack = function() {
+ var values = d3_identity, order = d3_layout_stackOrderDefault, offset = d3_layout_stackOffsetZero, out = d3_layout_stackOut, x = d3_layout_stackX, y = d3_layout_stackY;
+ function stack(data, index) {
+ if (!(n = data.length)) return data;
+ var series = data.map(function(d, i) {
+ return values.call(stack, d, i);
+ });
+ var points = series.map(function(d) {
+ return d.map(function(v, i) {
+ return [ x.call(stack, v, i), y.call(stack, v, i) ];
+ });
+ });
+ var orders = order.call(stack, points, index);
+ series = d3.permute(series, orders);
+ points = d3.permute(points, orders);
+ var offsets = offset.call(stack, points, index);
+ var m = series[0].length, n, i, j, o;
+ for (j = 0; j < m; ++j) {
+ out.call(stack, series[0][j], o = offsets[j], points[0][j][1]);
+ for (i = 1; i < n; ++i) {
+ out.call(stack, series[i][j], o += points[i - 1][j][1], points[i][j][1]);
+ }
+ }
+ return data;
+ }
+ stack.values = function(x) {
+ if (!arguments.length) return values;
+ values = x;
+ return stack;
+ };
+ stack.order = function(x) {
+ if (!arguments.length) return order;
+ order = typeof x === "function" ? x : d3_layout_stackOrders.get(x) || d3_layout_stackOrderDefault;
+ return stack;
+ };
+ stack.offset = function(x) {
+ if (!arguments.length) return offset;
+ offset = typeof x === "function" ? x : d3_layout_stackOffsets.get(x) || d3_layout_stackOffsetZero;
+ return stack;
+ };
+ stack.x = function(z) {
+ if (!arguments.length) return x;
+ x = z;
+ return stack;
+ };
+ stack.y = function(z) {
+ if (!arguments.length) return y;
+ y = z;
+ return stack;
+ };
+ stack.out = function(z) {
+ if (!arguments.length) return out;
+ out = z;
+ return stack;
+ };
+ return stack;
+ };
+ function d3_layout_stackX(d) {
+ return d.x;
+ }
+ function d3_layout_stackY(d) {
+ return d.y;
+ }
+ function d3_layout_stackOut(d, y0, y) {
+ d.y0 = y0;
+ d.y = y;
+ }
+ var d3_layout_stackOrders = d3.map({
+ "inside-out": function(data) {
+ var n = data.length, i, j, max = data.map(d3_layout_stackMaxIndex), sums = data.map(d3_layout_stackReduceSum), index = d3.range(n).sort(function(a, b) {
+ return max[a] - max[b];
+ }), top = 0, bottom = 0, tops = [], bottoms = [];
+ for (i = 0; i < n; ++i) {
+ j = index[i];
+ if (top < bottom) {
+ top += sums[j];
+ tops.push(j);
+ } else {
+ bottom += sums[j];
+ bottoms.push(j);
+ }
+ }
+ return bottoms.reverse().concat(tops);
+ },
+ reverse: function(data) {
+ return d3.range(data.length).reverse();
+ },
+ "default": d3_layout_stackOrderDefault
+ });
+ var d3_layout_stackOffsets = d3.map({
+ silhouette: function(data) {
+ var n = data.length, m = data[0].length, sums = [], max = 0, i, j, o, y0 = [];
+ for (j = 0; j < m; ++j) {
+ for (i = 0, o = 0; i < n; i++) o += data[i][j][1];
+ if (o > max) max = o;
+ sums.push(o);
+ }
+ for (j = 0; j < m; ++j) {
+ y0[j] = (max - sums[j]) / 2;
+ }
+ return y0;
+ },
+ wiggle: function(data) {
+ var n = data.length, x = data[0], m = x.length, i, j, k, s1, s2, s3, dx, o, o0, y0 = [];
+ y0[0] = o = o0 = 0;
+ for (j = 1; j < m; ++j) {
+ for (i = 0, s1 = 0; i < n; ++i) s1 += data[i][j][1];
+ for (i = 0, s2 = 0, dx = x[j][0] - x[j - 1][0]; i < n; ++i) {
+ for (k = 0, s3 = (data[i][j][1] - data[i][j - 1][1]) / (2 * dx); k < i; ++k) {
+ s3 += (data[k][j][1] - data[k][j - 1][1]) / dx;
+ }
+ s2 += s3 * data[i][j][1];
+ }
+ y0[j] = o -= s1 ? s2 / s1 * dx : 0;
+ if (o < o0) o0 = o;
+ }
+ for (j = 0; j < m; ++j) y0[j] -= o0;
+ return y0;
+ },
+ expand: function(data) {
+ var n = data.length, m = data[0].length, k = 1 / n, i, j, o, y0 = [];
+ for (j = 0; j < m; ++j) {
+ for (i = 0, o = 0; i < n; i++) o += data[i][j][1];
+ if (o) for (i = 0; i < n; i++) data[i][j][1] /= o; else for (i = 0; i < n; i++) data[i][j][1] = k;
+ }
+ for (j = 0; j < m; ++j) y0[j] = 0;
+ return y0;
+ },
+ zero: d3_layout_stackOffsetZero
+ });
+ function d3_layout_stackOrderDefault(data) {
+ return d3.range(data.length);
+ }
+ function d3_layout_stackOffsetZero(data) {
+ var j = -1, m = data[0].length, y0 = [];
+ while (++j < m) y0[j] = 0;
+ return y0;
+ }
+ function d3_layout_stackMaxIndex(array) {
+ var i = 1, j = 0, v = array[0][1], k, n = array.length;
+ for (;i < n; ++i) {
+ if ((k = array[i][1]) > v) {
+ j = i;
+ v = k;
+ }
+ }
+ return j;
+ }
+ function d3_layout_stackReduceSum(d) {
+ return d.reduce(d3_layout_stackSum, 0);
+ }
+ function d3_layout_stackSum(p, d) {
+ return p + d[1];
+ }
+ d3.layout.histogram = function() {
+ var frequency = true, valuer = Number, ranger = d3_layout_histogramRange, binner = d3_layout_histogramBinSturges;
+ function histogram(data, i) {
+ var bins = [], values = data.map(valuer, this), range = ranger.call(this, values, i), thresholds = binner.call(this, range, values, i), bin, i = -1, n = values.length, m = thresholds.length - 1, k = frequency ? 1 : 1 / n, x;
+ while (++i < m) {
+ bin = bins[i] = [];
+ bin.dx = thresholds[i + 1] - (bin.x = thresholds[i]);
+ bin.y = 0;
+ }
+ if (m > 0) {
+ i = -1;
+ while (++i < n) {
+ x = values[i];
+ if (x >= range[0] && x <= range[1]) {
+ bin = bins[d3.bisect(thresholds, x, 1, m) - 1];
+ bin.y += k;
+ bin.push(data[i]);
+ }
+ }
+ }
+ return bins;
+ }
+ histogram.value = function(x) {
+ if (!arguments.length) return valuer;
+ valuer = x;
+ return histogram;
+ };
+ histogram.range = function(x) {
+ if (!arguments.length) return ranger;
+ ranger = d3_functor(x);
+ return histogram;
+ };
+ histogram.bins = function(x) {
+ if (!arguments.length) return binner;
+ binner = typeof x === "number" ? function(range) {
+ return d3_layout_histogramBinFixed(range, x);
+ } : d3_functor(x);
+ return histogram;
+ };
+ histogram.frequency = function(x) {
+ if (!arguments.length) return frequency;
+ frequency = !!x;
+ return histogram;
+ };
+ return histogram;
+ };
+ function d3_layout_histogramBinSturges(range, values) {
+ return d3_layout_histogramBinFixed(range, Math.ceil(Math.log(values.length) / Math.LN2 + 1));
+ }
+ function d3_layout_histogramBinFixed(range, n) {
+ var x = -1, b = +range[0], m = (range[1] - b) / n, f = [];
+ while (++x <= n) f[x] = m * x + b;
+ return f;
+ }
+ function d3_layout_histogramRange(values) {
+ return [ d3.min(values), d3.max(values) ];
+ }
+ d3.layout.pack = function() {
+ var hierarchy = d3.layout.hierarchy().sort(d3_layout_packSort), padding = 0, size = [ 1, 1 ], radius;
+ function pack(d, i) {
+ var nodes = hierarchy.call(this, d, i), root = nodes[0], w = size[0], h = size[1], r = radius == null ? Math.sqrt : typeof radius === "function" ? radius : function() {
+ return radius;
+ };
+ root.x = root.y = 0;
+ d3_layout_hierarchyVisitAfter(root, function(d) {
+ d.r = +r(d.value);
+ });
+ d3_layout_hierarchyVisitAfter(root, d3_layout_packSiblings);
+ if (padding) {
+ var dr = padding * (radius ? 1 : Math.max(2 * root.r / w, 2 * root.r / h)) / 2;
+ d3_layout_hierarchyVisitAfter(root, function(d) {
+ d.r += dr;
+ });
+ d3_layout_hierarchyVisitAfter(root, d3_layout_packSiblings);
+ d3_layout_hierarchyVisitAfter(root, function(d) {
+ d.r -= dr;
+ });
+ }
+ d3_layout_packTransform(root, w / 2, h / 2, radius ? 1 : 1 / Math.max(2 * root.r / w, 2 * root.r / h));
+ return nodes;
+ }
+ pack.size = function(_) {
+ if (!arguments.length) return size;
+ size = _;
+ return pack;
+ };
+ pack.radius = function(_) {
+ if (!arguments.length) return radius;
+ radius = _ == null || typeof _ === "function" ? _ : +_;
+ return pack;
+ };
+ pack.padding = function(_) {
+ if (!arguments.length) return padding;
+ padding = +_;
+ return pack;
+ };
+ return d3_layout_hierarchyRebind(pack, hierarchy);
+ };
+ function d3_layout_packSort(a, b) {
+ return a.value - b.value;
+ }
+ function d3_layout_packInsert(a, b) {
+ var c = a._pack_next;
+ a._pack_next = b;
+ b._pack_prev = a;
+ b._pack_next = c;
+ c._pack_prev = b;
+ }
+ function d3_layout_packSplice(a, b) {
+ a._pack_next = b;
+ b._pack_prev = a;
+ }
+ function d3_layout_packIntersects(a, b) {
+ var dx = b.x - a.x, dy = b.y - a.y, dr = a.r + b.r;
+ return .999 * dr * dr > dx * dx + dy * dy;
+ }
+ function d3_layout_packSiblings(node) {
+ if (!(nodes = node.children) || !(n = nodes.length)) return;
+ var nodes, xMin = Infinity, xMax = -Infinity, yMin = Infinity, yMax = -Infinity, a, b, c, i, j, k, n;
+ function bound(node) {
+ xMin = Math.min(node.x - node.r, xMin);
+ xMax = Math.max(node.x + node.r, xMax);
+ yMin = Math.min(node.y - node.r, yMin);
+ yMax = Math.max(node.y + node.r, yMax);
+ }
+ nodes.forEach(d3_layout_packLink);
+ a = nodes[0];
+ a.x = -a.r;
+ a.y = 0;
+ bound(a);
+ if (n > 1) {
+ b = nodes[1];
+ b.x = b.r;
+ b.y = 0;
+ bound(b);
+ if (n > 2) {
+ c = nodes[2];
+ d3_layout_packPlace(a, b, c);
+ bound(c);
+ d3_layout_packInsert(a, c);
+ a._pack_prev = c;
+ d3_layout_packInsert(c, b);
+ b = a._pack_next;
+ for (i = 3; i < n; i++) {
+ d3_layout_packPlace(a, b, c = nodes[i]);
+ var isect = 0, s1 = 1, s2 = 1;
+ for (j = b._pack_next; j !== b; j = j._pack_next, s1++) {
+ if (d3_layout_packIntersects(j, c)) {
+ isect = 1;
+ break;
+ }
+ }
+ if (isect == 1) {
+ for (k = a._pack_prev; k !== j._pack_prev; k = k._pack_prev, s2++) {
+ if (d3_layout_packIntersects(k, c)) {
+ break;
+ }
+ }
+ }
+ if (isect) {
+ if (s1 < s2 || s1 == s2 && b.r < a.r) d3_layout_packSplice(a, b = j); else d3_layout_packSplice(a = k, b);
+ i--;
+ } else {
+ d3_layout_packInsert(a, c);
+ b = c;
+ bound(c);
+ }
+ }
+ }
+ }
+ var cx = (xMin + xMax) / 2, cy = (yMin + yMax) / 2, cr = 0;
+ for (i = 0; i < n; i++) {
+ c = nodes[i];
+ c.x -= cx;
+ c.y -= cy;
+ cr = Math.max(cr, c.r + Math.sqrt(c.x * c.x + c.y * c.y));
+ }
+ node.r = cr;
+ nodes.forEach(d3_layout_packUnlink);
+ }
+ function d3_layout_packLink(node) {
+ node._pack_next = node._pack_prev = node;
+ }
+ function d3_layout_packUnlink(node) {
+ delete node._pack_next;
+ delete node._pack_prev;
+ }
+ function d3_layout_packTransform(node, x, y, k) {
+ var children = node.children;
+ node.x = x += k * node.x;
+ node.y = y += k * node.y;
+ node.r *= k;
+ if (children) {
+ var i = -1, n = children.length;
+ while (++i < n) d3_layout_packTransform(children[i], x, y, k);
+ }
+ }
+ function d3_layout_packPlace(a, b, c) {
+ var db = a.r + c.r, dx = b.x - a.x, dy = b.y - a.y;
+ if (db && (dx || dy)) {
+ var da = b.r + c.r, dc = dx * dx + dy * dy;
+ da *= da;
+ db *= db;
+ var x = .5 + (db - da) / (2 * dc), y = Math.sqrt(Math.max(0, 2 * da * (db + dc) - (db -= dc) * db - da * da)) / (2 * dc);
+ c.x = a.x + x * dx + y * dy;
+ c.y = a.y + x * dy - y * dx;
+ } else {
+ c.x = a.x + db;
+ c.y = a.y;
+ }
+ }
+ d3.layout.tree = function() {
+ var hierarchy = d3.layout.hierarchy().sort(null).value(null), separation = d3_layout_treeSeparation, size = [ 1, 1 ], nodeSize = null;
+ function tree(d, i) {
+ var nodes = hierarchy.call(this, d, i), root0 = nodes[0], root1 = wrapTree(root0);
+ d3_layout_hierarchyVisitAfter(root1, firstWalk), root1.parent.m = -root1.z;
+ d3_layout_hierarchyVisitBefore(root1, secondWalk);
+ if (nodeSize) d3_layout_hierarchyVisitBefore(root0, sizeNode); else {
+ var left = root0, right = root0, bottom = root0;
+ d3_layout_hierarchyVisitBefore(root0, function(node) {
+ if (node.x < left.x) left = node;
+ if (node.x > right.x) right = node;
+ if (node.depth > bottom.depth) bottom = node;
+ });
+ var tx = separation(left, right) / 2 - left.x, kx = size[0] / (right.x + separation(right, left) / 2 + tx), ky = size[1] / (bottom.depth || 1);
+ d3_layout_hierarchyVisitBefore(root0, function(node) {
+ node.x = (node.x + tx) * kx;
+ node.y = node.depth * ky;
+ });
+ }
+ return nodes;
+ }
+ function wrapTree(root0) {
+ var root1 = {
+ A: null,
+ children: [ root0 ]
+ }, queue = [ root1 ], node1;
+ while ((node1 = queue.pop()) != null) {
+ for (var children = node1.children, child, i = 0, n = children.length; i < n; ++i) {
+ queue.push((children[i] = child = {
+ _: children[i],
+ parent: node1,
+ children: (child = children[i].children) && child.slice() || [],
+ A: null,
+ a: null,
+ z: 0,
+ m: 0,
+ c: 0,
+ s: 0,
+ t: null,
+ i: i
+ }).a = child);
+ }
+ }
+ return root1.children[0];
+ }
+ function firstWalk(v) {
+ var children = v.children, siblings = v.parent.children, w = v.i ? siblings[v.i - 1] : null;
+ if (children.length) {
+ d3_layout_treeShift(v);
+ var midpoint = (children[0].z + children[children.length - 1].z) / 2;
+ if (w) {
+ v.z = w.z + separation(v._, w._);
+ v.m = v.z - midpoint;
+ } else {
+ v.z = midpoint;
+ }
+ } else if (w) {
+ v.z = w.z + separation(v._, w._);
+ }
+ v.parent.A = apportion(v, w, v.parent.A || siblings[0]);
+ }
+ function secondWalk(v) {
+ v._.x = v.z + v.parent.m;
+ v.m += v.parent.m;
+ }
+ function apportion(v, w, ancestor) {
+ if (w) {
+ var vip = v, vop = v, vim = w, vom = vip.parent.children[0], sip = vip.m, sop = vop.m, sim = vim.m, som = vom.m, shift;
+ while (vim = d3_layout_treeRight(vim), vip = d3_layout_treeLeft(vip), vim && vip) {
+ vom = d3_layout_treeLeft(vom);
+ vop = d3_layout_treeRight(vop);
+ vop.a = v;
+ shift = vim.z + sim - vip.z - sip + separation(vim._, vip._);
+ if (shift > 0) {
+ d3_layout_treeMove(d3_layout_treeAncestor(vim, v, ancestor), v, shift);
+ sip += shift;
+ sop += shift;
+ }
+ sim += vim.m;
+ sip += vip.m;
+ som += vom.m;
+ sop += vop.m;
+ }
+ if (vim && !d3_layout_treeRight(vop)) {
+ vop.t = vim;
+ vop.m += sim - sop;
+ }
+ if (vip && !d3_layout_treeLeft(vom)) {
+ vom.t = vip;
+ vom.m += sip - som;
+ ancestor = v;
+ }
+ }
+ return ancestor;
+ }
+ function sizeNode(node) {
+ node.x *= size[0];
+ node.y = node.depth * size[1];
+ }
+ tree.separation = function(x) {
+ if (!arguments.length) return separation;
+ separation = x;
+ return tree;
+ };
+ tree.size = function(x) {
+ if (!arguments.length) return nodeSize ? null : size;
+ nodeSize = (size = x) == null ? sizeNode : null;
+ return tree;
+ };
+ tree.nodeSize = function(x) {
+ if (!arguments.length) return nodeSize ? size : null;
+ nodeSize = (size = x) == null ? null : sizeNode;
+ return tree;
+ };
+ return d3_layout_hierarchyRebind(tree, hierarchy);
+ };
+ function d3_layout_treeSeparation(a, b) {
+ return a.parent == b.parent ? 1 : 2;
+ }
+ function d3_layout_treeLeft(v) {
+ var children = v.children;
+ return children.length ? children[0] : v.t;
+ }
+ function d3_layout_treeRight(v) {
+ var children = v.children, n;
+ return (n = children.length) ? children[n - 1] : v.t;
+ }
+ function d3_layout_treeMove(wm, wp, shift) {
+ var change = shift / (wp.i - wm.i);
+ wp.c -= change;
+ wp.s += shift;
+ wm.c += change;
+ wp.z += shift;
+ wp.m += shift;
+ }
+ function d3_layout_treeShift(v) {
+ var shift = 0, change = 0, children = v.children, i = children.length, w;
+ while (--i >= 0) {
+ w = children[i];
+ w.z += shift;
+ w.m += shift;
+ shift += w.s + (change += w.c);
+ }
+ }
+ function d3_layout_treeAncestor(vim, v, ancestor) {
+ return vim.a.parent === v.parent ? vim.a : ancestor;
+ }
+ d3.layout.cluster = function() {
+ var hierarchy = d3.layout.hierarchy().sort(null).value(null), separation = d3_layout_treeSeparation, size = [ 1, 1 ], nodeSize = false;
+ function cluster(d, i) {
+ var nodes = hierarchy.call(this, d, i), root = nodes[0], previousNode, x = 0;
+ d3_layout_hierarchyVisitAfter(root, function(node) {
+ var children = node.children;
+ if (children && children.length) {
+ node.x = d3_layout_clusterX(children);
+ node.y = d3_layout_clusterY(children);
+ } else {
+ node.x = previousNode ? x += separation(node, previousNode) : 0;
+ node.y = 0;
+ previousNode = node;
+ }
+ });
+ var left = d3_layout_clusterLeft(root), right = d3_layout_clusterRight(root), x0 = left.x - separation(left, right) / 2, x1 = right.x + separation(right, left) / 2;
+ d3_layout_hierarchyVisitAfter(root, nodeSize ? function(node) {
+ node.x = (node.x - root.x) * size[0];
+ node.y = (root.y - node.y) * size[1];
+ } : function(node) {
+ node.x = (node.x - x0) / (x1 - x0) * size[0];
+ node.y = (1 - (root.y ? node.y / root.y : 1)) * size[1];
+ });
+ return nodes;
+ }
+ cluster.separation = function(x) {
+ if (!arguments.length) return separation;
+ separation = x;
+ return cluster;
+ };
+ cluster.size = function(x) {
+ if (!arguments.length) return nodeSize ? null : size;
+ nodeSize = (size = x) == null;
+ return cluster;
+ };
+ cluster.nodeSize = function(x) {
+ if (!arguments.length) return nodeSize ? size : null;
+ nodeSize = (size = x) != null;
+ return cluster;
+ };
+ return d3_layout_hierarchyRebind(cluster, hierarchy);
+ };
+ function d3_layout_clusterY(children) {
+ return 1 + d3.max(children, function(child) {
+ return child.y;
+ });
+ }
+ function d3_layout_clusterX(children) {
+ return children.reduce(function(x, child) {
+ return x + child.x;
+ }, 0) / children.length;
+ }
+ function d3_layout_clusterLeft(node) {
+ var children = node.children;
+ return children && children.length ? d3_layout_clusterLeft(children[0]) : node;
+ }
+ function d3_layout_clusterRight(node) {
+ var children = node.children, n;
+ return children && (n = children.length) ? d3_layout_clusterRight(children[n - 1]) : node;
+ }
+ d3.layout.treemap = function() {
+ var hierarchy = d3.layout.hierarchy(), round = Math.round, size = [ 1, 1 ], padding = null, pad = d3_layout_treemapPadNull, sticky = false, stickies, mode = "squarify", ratio = .5 * (1 + Math.sqrt(5));
+ function scale(children, k) {
+ var i = -1, n = children.length, child, area;
+ while (++i < n) {
+ area = (child = children[i]).value * (k < 0 ? 0 : k);
+ child.area = isNaN(area) || area <= 0 ? 0 : area;
+ }
+ }
+ function squarify(node) {
+ var children = node.children;
+ if (children && children.length) {
+ var rect = pad(node), row = [], remaining = children.slice(), child, best = Infinity, score, u = mode === "slice" ? rect.dx : mode === "dice" ? rect.dy : mode === "slice-dice" ? node.depth & 1 ? rect.dy : rect.dx : Math.min(rect.dx, rect.dy), n;
+ scale(remaining, rect.dx * rect.dy / node.value);
+ row.area = 0;
+ while ((n = remaining.length) > 0) {
+ row.push(child = remaining[n - 1]);
+ row.area += child.area;
+ if (mode !== "squarify" || (score = worst(row, u)) <= best) {
+ remaining.pop();
+ best = score;
+ } else {
+ row.area -= row.pop().area;
+ position(row, u, rect, false);
+ u = Math.min(rect.dx, rect.dy);
+ row.length = row.area = 0;
+ best = Infinity;
+ }
+ }
+ if (row.length) {
+ position(row, u, rect, true);
+ row.length = row.area = 0;
+ }
+ children.forEach(squarify);
+ }
+ }
+ function stickify(node) {
+ var children = node.children;
+ if (children && children.length) {
+ var rect = pad(node), remaining = children.slice(), child, row = [];
+ scale(remaining, rect.dx * rect.dy / node.value);
+ row.area = 0;
+ while (child = remaining.pop()) {
+ row.push(child);
+ row.area += child.area;
+ if (child.z != null) {
+ position(row, child.z ? rect.dx : rect.dy, rect, !remaining.length);
+ row.length = row.area = 0;
+ }
+ }
+ children.forEach(stickify);
+ }
+ }
+ function worst(row, u) {
+ var s = row.area, r, rmax = 0, rmin = Infinity, i = -1, n = row.length;
+ while (++i < n) {
+ if (!(r = row[i].area)) continue;
+ if (r < rmin) rmin = r;
+ if (r > rmax) rmax = r;
+ }
+ s *= s;
+ u *= u;
+ return s ? Math.max(u * rmax * ratio / s, s / (u * rmin * ratio)) : Infinity;
+ }
+ function position(row, u, rect, flush) {
+ var i = -1, n = row.length, x = rect.x, y = rect.y, v = u ? round(row.area / u) : 0, o;
+ if (u == rect.dx) {
+ if (flush || v > rect.dy) v = rect.dy;
+ while (++i < n) {
+ o = row[i];
+ o.x = x;
+ o.y = y;
+ o.dy = v;
+ x += o.dx = Math.min(rect.x + rect.dx - x, v ? round(o.area / v) : 0);
+ }
+ o.z = true;
+ o.dx += rect.x + rect.dx - x;
+ rect.y += v;
+ rect.dy -= v;
+ } else {
+ if (flush || v > rect.dx) v = rect.dx;
+ while (++i < n) {
+ o = row[i];
+ o.x = x;
+ o.y = y;
+ o.dx = v;
+ y += o.dy = Math.min(rect.y + rect.dy - y, v ? round(o.area / v) : 0);
+ }
+ o.z = false;
+ o.dy += rect.y + rect.dy - y;
+ rect.x += v;
+ rect.dx -= v;
+ }
+ }
+ function treemap(d) {
+ var nodes = stickies || hierarchy(d), root = nodes[0];
+ root.x = 0;
+ root.y = 0;
+ root.dx = size[0];
+ root.dy = size[1];
+ if (stickies) hierarchy.revalue(root);
+ scale([ root ], root.dx * root.dy / root.value);
+ (stickies ? stickify : squarify)(root);
+ if (sticky) stickies = nodes;
+ return nodes;
+ }
+ treemap.size = function(x) {
+ if (!arguments.length) return size;
+ size = x;
+ return treemap;
+ };
+ treemap.padding = function(x) {
+ if (!arguments.length) return padding;
+ function padFunction(node) {
+ var p = x.call(treemap, node, node.depth);
+ return p == null ? d3_layout_treemapPadNull(node) : d3_layout_treemapPad(node, typeof p === "number" ? [ p, p, p, p ] : p);
+ }
+ function padConstant(node) {
+ return d3_layout_treemapPad(node, x);
+ }
+ var type;
+ pad = (padding = x) == null ? d3_layout_treemapPadNull : (type = typeof x) === "function" ? padFunction : type === "number" ? (x = [ x, x, x, x ],
+ padConstant) : padConstant;
+ return treemap;
+ };
+ treemap.round = function(x) {
+ if (!arguments.length) return round != Number;
+ round = x ? Math.round : Number;
+ return treemap;
+ };
+ treemap.sticky = function(x) {
+ if (!arguments.length) return sticky;
+ sticky = x;
+ stickies = null;
+ return treemap;
+ };
+ treemap.ratio = function(x) {
+ if (!arguments.length) return ratio;
+ ratio = x;
+ return treemap;
+ };
+ treemap.mode = function(x) {
+ if (!arguments.length) return mode;
+ mode = x + "";
+ return treemap;
+ };
+ return d3_layout_hierarchyRebind(treemap, hierarchy);
+ };
+ function d3_layout_treemapPadNull(node) {
+ return {
+ x: node.x,
+ y: node.y,
+ dx: node.dx,
+ dy: node.dy
+ };
+ }
+ function d3_layout_treemapPad(node, padding) {
+ var x = node.x + padding[3], y = node.y + padding[0], dx = node.dx - padding[1] - padding[3], dy = node.dy - padding[0] - padding[2];
+ if (dx < 0) {
+ x += dx / 2;
+ dx = 0;
+ }
+ if (dy < 0) {
+ y += dy / 2;
+ dy = 0;
+ }
+ return {
+ x: x,
+ y: y,
+ dx: dx,
+ dy: dy
+ };
+ }
+ d3.random = {
+ normal: function(µ, σ) {
+ var n = arguments.length;
+ if (n < 2) σ = 1;
+ if (n < 1) µ = 0;
+ return function() {
+ var x, y, r;
+ do {
+ x = Math.random() * 2 - 1;
+ y = Math.random() * 2 - 1;
+ r = x * x + y * y;
+ } while (!r || r > 1);
+ return µ + σ * x * Math.sqrt(-2 * Math.log(r) / r);
+ };
+ },
+ logNormal: function() {
+ var random = d3.random.normal.apply(d3, arguments);
+ return function() {
+ return Math.exp(random());
+ };
+ },
+ bates: function(m) {
+ var random = d3.random.irwinHall(m);
+ return function() {
+ return random() / m;
+ };
+ },
+ irwinHall: function(m) {
+ return function() {
+ for (var s = 0, j = 0; j < m; j++) s += Math.random();
+ return s;
+ };
+ }
+ };
+ d3.scale = {};
+ function d3_scaleExtent(domain) {
+ var start = domain[0], stop = domain[domain.length - 1];
+ return start < stop ? [ start, stop ] : [ stop, start ];
+ }
+ function d3_scaleRange(scale) {
+ return scale.rangeExtent ? scale.rangeExtent() : d3_scaleExtent(scale.range());
+ }
+ function d3_scale_bilinear(domain, range, uninterpolate, interpolate) {
+ var u = uninterpolate(domain[0], domain[1]), i = interpolate(range[0], range[1]);
+ return function(x) {
+ return i(u(x));
+ };
+ }
+ function d3_scale_nice(domain, nice) {
+ var i0 = 0, i1 = domain.length - 1, x0 = domain[i0], x1 = domain[i1], dx;
+ if (x1 < x0) {
+ dx = i0, i0 = i1, i1 = dx;
+ dx = x0, x0 = x1, x1 = dx;
+ }
+ domain[i0] = nice.floor(x0);
+ domain[i1] = nice.ceil(x1);
+ return domain;
+ }
+ function d3_scale_niceStep(step) {
+ return step ? {
+ floor: function(x) {
+ return Math.floor(x / step) * step;
+ },
+ ceil: function(x) {
+ return Math.ceil(x / step) * step;
+ }
+ } : d3_scale_niceIdentity;
+ }
+ var d3_scale_niceIdentity = {
+ floor: d3_identity,
+ ceil: d3_identity
+ };
+ function d3_scale_polylinear(domain, range, uninterpolate, interpolate) {
+ var u = [], i = [], j = 0, k = Math.min(domain.length, range.length) - 1;
+ if (domain[k] < domain[0]) {
+ domain = domain.slice().reverse();
+ range = range.slice().reverse();
+ }
+ while (++j <= k) {
+ u.push(uninterpolate(domain[j - 1], domain[j]));
+ i.push(interpolate(range[j - 1], range[j]));
+ }
+ return function(x) {
+ var j = d3.bisect(domain, x, 1, k) - 1;
+ return i[j](u[j](x));
+ };
+ }
+ d3.scale.linear = function() {
+ return d3_scale_linear([ 0, 1 ], [ 0, 1 ], d3_interpolate, false);
+ };
+ function d3_scale_linear(domain, range, interpolate, clamp) {
+ var output, input;
+ function rescale() {
+ var linear = Math.min(domain.length, range.length) > 2 ? d3_scale_polylinear : d3_scale_bilinear, uninterpolate = clamp ? d3_uninterpolateClamp : d3_uninterpolateNumber;
+ output = linear(domain, range, uninterpolate, interpolate);
+ input = linear(range, domain, uninterpolate, d3_interpolate);
+ return scale;
+ }
+ function scale(x) {
+ return output(x);
+ }
+ scale.invert = function(y) {
+ return input(y);
+ };
+ scale.domain = function(x) {
+ if (!arguments.length) return domain;
+ domain = x.map(Number);
+ return rescale();
+ };
+ scale.range = function(x) {
+ if (!arguments.length) return range;
+ range = x;
+ return rescale();
+ };
+ scale.rangeRound = function(x) {
+ return scale.range(x).interpolate(d3_interpolateRound);
+ };
+ scale.clamp = function(x) {
+ if (!arguments.length) return clamp;
+ clamp = x;
+ return rescale();
+ };
+ scale.interpolate = function(x) {
+ if (!arguments.length) return interpolate;
+ interpolate = x;
+ return rescale();
+ };
+ scale.ticks = function(m) {
+ return d3_scale_linearTicks(domain, m);
+ };
+ scale.tickFormat = function(m, format) {
+ return d3_scale_linearTickFormat(domain, m, format);
+ };
+ scale.nice = function(m) {
+ d3_scale_linearNice(domain, m);
+ return rescale();
+ };
+ scale.copy = function() {
+ return d3_scale_linear(domain, range, interpolate, clamp);
+ };
+ return rescale();
+ }
+ function d3_scale_linearRebind(scale, linear) {
+ return d3.rebind(scale, linear, "range", "rangeRound", "interpolate", "clamp");
+ }
+ function d3_scale_linearNice(domain, m) {
+ return d3_scale_nice(domain, d3_scale_niceStep(d3_scale_linearTickRange(domain, m)[2]));
+ }
+ function d3_scale_linearTickRange(domain, m) {
+ if (m == null) m = 10;
+ var extent = d3_scaleExtent(domain), span = extent[1] - extent[0], step = Math.pow(10, Math.floor(Math.log(span / m) / Math.LN10)), err = m / span * step;
+ if (err <= .15) step *= 10; else if (err <= .35) step *= 5; else if (err <= .75) step *= 2;
+ extent[0] = Math.ceil(extent[0] / step) * step;
+ extent[1] = Math.floor(extent[1] / step) * step + step * .5;
+ extent[2] = step;
+ return extent;
+ }
+ function d3_scale_linearTicks(domain, m) {
+ return d3.range.apply(d3, d3_scale_linearTickRange(domain, m));
+ }
+ function d3_scale_linearTickFormat(domain, m, format) {
+ var range = d3_scale_linearTickRange(domain, m);
+ if (format) {
+ var match = d3_format_re.exec(format);
+ match.shift();
+ if (match[8] === "s") {
+ var prefix = d3.formatPrefix(Math.max(abs(range[0]), abs(range[1])));
+ if (!match[7]) match[7] = "." + d3_scale_linearPrecision(prefix.scale(range[2]));
+ match[8] = "f";
+ format = d3.format(match.join(""));
+ return function(d) {
+ return format(prefix.scale(d)) + prefix.symbol;
+ };
+ }
+ if (!match[7]) match[7] = "." + d3_scale_linearFormatPrecision(match[8], range);
+ format = match.join("");
+ } else {
+ format = ",." + d3_scale_linearPrecision(range[2]) + "f";
+ }
+ return d3.format(format);
+ }
+ var d3_scale_linearFormatSignificant = {
+ s: 1,
+ g: 1,
+ p: 1,
+ r: 1,
+ e: 1
+ };
+ function d3_scale_linearPrecision(value) {
+ return -Math.floor(Math.log(value) / Math.LN10 + .01);
+ }
+ function d3_scale_linearFormatPrecision(type, range) {
+ var p = d3_scale_linearPrecision(range[2]);
+ return type in d3_scale_linearFormatSignificant ? Math.abs(p - d3_scale_linearPrecision(Math.max(abs(range[0]), abs(range[1])))) + +(type !== "e") : p - (type === "%") * 2;
+ }
+ d3.scale.log = function() {
+ return d3_scale_log(d3.scale.linear().domain([ 0, 1 ]), 10, true, [ 1, 10 ]);
+ };
+ function d3_scale_log(linear, base, positive, domain) {
+ function log(x) {
+ return (positive ? Math.log(x < 0 ? 0 : x) : -Math.log(x > 0 ? 0 : -x)) / Math.log(base);
+ }
+ function pow(x) {
+ return positive ? Math.pow(base, x) : -Math.pow(base, -x);
+ }
+ function scale(x) {
+ return linear(log(x));
+ }
+ scale.invert = function(x) {
+ return pow(linear.invert(x));
+ };
+ scale.domain = function(x) {
+ if (!arguments.length) return domain;
+ positive = x[0] >= 0;
+ linear.domain((domain = x.map(Number)).map(log));
+ return scale;
+ };
+ scale.base = function(_) {
+ if (!arguments.length) return base;
+ base = +_;
+ linear.domain(domain.map(log));
+ return scale;
+ };
+ scale.nice = function() {
+ var niced = d3_scale_nice(domain.map(log), positive ? Math : d3_scale_logNiceNegative);
+ linear.domain(niced);
+ domain = niced.map(pow);
+ return scale;
+ };
+ scale.ticks = function() {
+ var extent = d3_scaleExtent(domain), ticks = [], u = extent[0], v = extent[1], i = Math.floor(log(u)), j = Math.ceil(log(v)), n = base % 1 ? 2 : base;
+ if (isFinite(j - i)) {
+ if (positive) {
+ for (;i < j; i++) for (var k = 1; k < n; k++) ticks.push(pow(i) * k);
+ ticks.push(pow(i));
+ } else {
+ ticks.push(pow(i));
+ for (;i++ < j; ) for (var k = n - 1; k > 0; k--) ticks.push(pow(i) * k);
+ }
+ for (i = 0; ticks[i] < u; i++) {}
+ for (j = ticks.length; ticks[j - 1] > v; j--) {}
+ ticks = ticks.slice(i, j);
+ }
+ return ticks;
+ };
+ scale.tickFormat = function(n, format) {
+ if (!arguments.length) return d3_scale_logFormat;
+ if (arguments.length < 2) format = d3_scale_logFormat; else if (typeof format !== "function") format = d3.format(format);
+ var k = Math.max(.1, n / scale.ticks().length), f = positive ? (e = 1e-12, Math.ceil) : (e = -1e-12,
+ Math.floor), e;
+ return function(d) {
+ return d / pow(f(log(d) + e)) <= k ? format(d) : "";
+ };
+ };
+ scale.copy = function() {
+ return d3_scale_log(linear.copy(), base, positive, domain);
+ };
+ return d3_scale_linearRebind(scale, linear);
+ }
+ var d3_scale_logFormat = d3.format(".0e"), d3_scale_logNiceNegative = {
+ floor: function(x) {
+ return -Math.ceil(-x);
+ },
+ ceil: function(x) {
+ return -Math.floor(-x);
+ }
+ };
+ d3.scale.pow = function() {
+ return d3_scale_pow(d3.scale.linear(), 1, [ 0, 1 ]);
+ };
+ function d3_scale_pow(linear, exponent, domain) {
+ var powp = d3_scale_powPow(exponent), powb = d3_scale_powPow(1 / exponent);
+ function scale(x) {
+ return linear(powp(x));
+ }
+ scale.invert = function(x) {
+ return powb(linear.invert(x));
+ };
+ scale.domain = function(x) {
+ if (!arguments.length) return domain;
+ linear.domain((domain = x.map(Number)).map(powp));
+ return scale;
+ };
+ scale.ticks = function(m) {
+ return d3_scale_linearTicks(domain, m);
+ };
+ scale.tickFormat = function(m, format) {
+ return d3_scale_linearTickFormat(domain, m, format);
+ };
+ scale.nice = function(m) {
+ return scale.domain(d3_scale_linearNice(domain, m));
+ };
+ scale.exponent = function(x) {
+ if (!arguments.length) return exponent;
+ powp = d3_scale_powPow(exponent = x);
+ powb = d3_scale_powPow(1 / exponent);
+ linear.domain(domain.map(powp));
+ return scale;
+ };
+ scale.copy = function() {
+ return d3_scale_pow(linear.copy(), exponent, domain);
+ };
+ return d3_scale_linearRebind(scale, linear);
+ }
+ function d3_scale_powPow(e) {
+ return function(x) {
+ return x < 0 ? -Math.pow(-x, e) : Math.pow(x, e);
+ };
+ }
+ d3.scale.sqrt = function() {
+ return d3.scale.pow().exponent(.5);
+ };
+ d3.scale.ordinal = function() {
+ return d3_scale_ordinal([], {
+ t: "range",
+ a: [ [] ]
+ });
+ };
+ function d3_scale_ordinal(domain, ranger) {
+ var index, range, rangeBand;
+ function scale(x) {
+ return range[((index.get(x) || (ranger.t === "range" ? index.set(x, domain.push(x)) : NaN)) - 1) % range.length];
+ }
+ function steps(start, step) {
+ return d3.range(domain.length).map(function(i) {
+ return start + step * i;
+ });
+ }
+ scale.domain = function(x) {
+ if (!arguments.length) return domain;
+ domain = [];
+ index = new d3_Map();
+ var i = -1, n = x.length, xi;
+ while (++i < n) if (!index.has(xi = x[i])) index.set(xi, domain.push(xi));
+ return scale[ranger.t].apply(scale, ranger.a);
+ };
+ scale.range = function(x) {
+ if (!arguments.length) return range;
+ range = x;
+ rangeBand = 0;
+ ranger = {
+ t: "range",
+ a: arguments
+ };
+ return scale;
+ };
+ scale.rangePoints = function(x, padding) {
+ if (arguments.length < 2) padding = 0;
+ var start = x[0], stop = x[1], step = domain.length < 2 ? (start = (start + stop) / 2,
+ 0) : (stop - start) / (domain.length - 1 + padding);
+ range = steps(start + step * padding / 2, step);
+ rangeBand = 0;
+ ranger = {
+ t: "rangePoints",
+ a: arguments
+ };
+ return scale;
+ };
+ scale.rangeRoundPoints = function(x, padding) {
+ if (arguments.length < 2) padding = 0;
+ var start = x[0], stop = x[1], step = domain.length < 2 ? (start = stop = Math.round((start + stop) / 2),
+ 0) : (stop - start) / (domain.length - 1 + padding) | 0;
+ range = steps(start + Math.round(step * padding / 2 + (stop - start - (domain.length - 1 + padding) * step) / 2), step);
+ rangeBand = 0;
+ ranger = {
+ t: "rangeRoundPoints",
+ a: arguments
+ };
+ return scale;
+ };
+ scale.rangeBands = function(x, padding, outerPadding) {
+ if (arguments.length < 2) padding = 0;
+ if (arguments.length < 3) outerPadding = padding;
+ var reverse = x[1] < x[0], start = x[reverse - 0], stop = x[1 - reverse], step = (stop - start) / (domain.length - padding + 2 * outerPadding);
+ range = steps(start + step * outerPadding, step);
+ if (reverse) range.reverse();
+ rangeBand = step * (1 - padding);
+ ranger = {
+ t: "rangeBands",
+ a: arguments
+ };
+ return scale;
+ };
+ scale.rangeRoundBands = function(x, padding, outerPadding) {
+ if (arguments.length < 2) padding = 0;
+ if (arguments.length < 3) outerPadding = padding;
+ var reverse = x[1] < x[0], start = x[reverse - 0], stop = x[1 - reverse], step = Math.floor((stop - start) / (domain.length - padding + 2 * outerPadding));
+ range = steps(start + Math.round((stop - start - (domain.length - padding) * step) / 2), step);
+ if (reverse) range.reverse();
+ rangeBand = Math.round(step * (1 - padding));
+ ranger = {
+ t: "rangeRoundBands",
+ a: arguments
+ };
+ return scale;
+ };
+ scale.rangeBand = function() {
+ return rangeBand;
+ };
+ scale.rangeExtent = function() {
+ return d3_scaleExtent(ranger.a[0]);
+ };
+ scale.copy = function() {
+ return d3_scale_ordinal(domain, ranger);
+ };
+ return scale.domain(domain);
+ }
+ d3.scale.category10 = function() {
+ return d3.scale.ordinal().range(d3_category10);
+ };
+ d3.scale.category20 = function() {
+ return d3.scale.ordinal().range(d3_category20);
+ };
+ d3.scale.category20b = function() {
+ return d3.scale.ordinal().range(d3_category20b);
+ };
+ d3.scale.category20c = function() {
+ return d3.scale.ordinal().range(d3_category20c);
+ };
+ var d3_category10 = [ 2062260, 16744206, 2924588, 14034728, 9725885, 9197131, 14907330, 8355711, 12369186, 1556175 ].map(d3_rgbString);
+ var d3_category20 = [ 2062260, 11454440, 16744206, 16759672, 2924588, 10018698, 14034728, 16750742, 9725885, 12955861, 9197131, 12885140, 14907330, 16234194, 8355711, 13092807, 12369186, 14408589, 1556175, 10410725 ].map(d3_rgbString);
+ var d3_category20b = [ 3750777, 5395619, 7040719, 10264286, 6519097, 9216594, 11915115, 13556636, 9202993, 12426809, 15186514, 15190932, 8666169, 11356490, 14049643, 15177372, 8077683, 10834324, 13528509, 14589654 ].map(d3_rgbString);
+ var d3_category20c = [ 3244733, 7057110, 10406625, 13032431, 15095053, 16616764, 16625259, 16634018, 3253076, 7652470, 10607003, 13101504, 7695281, 10394312, 12369372, 14342891, 6513507, 9868950, 12434877, 14277081 ].map(d3_rgbString);
+ d3.scale.quantile = function() {
+ return d3_scale_quantile([], []);
+ };
+ function d3_scale_quantile(domain, range) {
+ var thresholds;
+ function rescale() {
+ var k = 0, q = range.length;
+ thresholds = [];
+ while (++k < q) thresholds[k - 1] = d3.quantile(domain, k / q);
+ return scale;
+ }
+ function scale(x) {
+ if (!isNaN(x = +x)) return range[d3.bisect(thresholds, x)];
+ }
+ scale.domain = function(x) {
+ if (!arguments.length) return domain;
+ domain = x.map(d3_number).filter(d3_numeric).sort(d3_ascending);
+ return rescale();
+ };
+ scale.range = function(x) {
+ if (!arguments.length) return range;
+ range = x;
+ return rescale();
+ };
+ scale.quantiles = function() {
+ return thresholds;
+ };
+ scale.invertExtent = function(y) {
+ y = range.indexOf(y);
+ return y < 0 ? [ NaN, NaN ] : [ y > 0 ? thresholds[y - 1] : domain[0], y < thresholds.length ? thresholds[y] : domain[domain.length - 1] ];
+ };
+ scale.copy = function() {
+ return d3_scale_quantile(domain, range);
+ };
+ return rescale();
+ }
+ d3.scale.quantize = function() {
+ return d3_scale_quantize(0, 1, [ 0, 1 ]);
+ };
+ function d3_scale_quantize(x0, x1, range) {
+ var kx, i;
+ function scale(x) {
+ return range[Math.max(0, Math.min(i, Math.floor(kx * (x - x0))))];
+ }
+ function rescale() {
+ kx = range.length / (x1 - x0);
+ i = range.length - 1;
+ return scale;
+ }
+ scale.domain = function(x) {
+ if (!arguments.length) return [ x0, x1 ];
+ x0 = +x[0];
+ x1 = +x[x.length - 1];
+ return rescale();
+ };
+ scale.range = function(x) {
+ if (!arguments.length) return range;
+ range = x;
+ return rescale();
+ };
+ scale.invertExtent = function(y) {
+ y = range.indexOf(y);
+ y = y < 0 ? NaN : y / kx + x0;
+ return [ y, y + 1 / kx ];
+ };
+ scale.copy = function() {
+ return d3_scale_quantize(x0, x1, range);
+ };
+ return rescale();
+ }
+ d3.scale.threshold = function() {
+ return d3_scale_threshold([ .5 ], [ 0, 1 ]);
+ };
+ function d3_scale_threshold(domain, range) {
+ function scale(x) {
+ if (x <= x) return range[d3.bisect(domain, x)];
+ }
+ scale.domain = function(_) {
+ if (!arguments.length) return domain;
+ domain = _;
+ return scale;
+ };
+ scale.range = function(_) {
+ if (!arguments.length) return range;
+ range = _;
+ return scale;
+ };
+ scale.invertExtent = function(y) {
+ y = range.indexOf(y);
+ return [ domain[y - 1], domain[y] ];
+ };
+ scale.copy = function() {
+ return d3_scale_threshold(domain, range);
+ };
+ return scale;
+ }
+ d3.scale.identity = function() {
+ return d3_scale_identity([ 0, 1 ]);
+ };
+ function d3_scale_identity(domain) {
+ function identity(x) {
+ return +x;
+ }
+ identity.invert = identity;
+ identity.domain = identity.range = function(x) {
+ if (!arguments.length) return domain;
+ domain = x.map(identity);
+ return identity;
+ };
+ identity.ticks = function(m) {
+ return d3_scale_linearTicks(domain, m);
+ };
+ identity.tickFormat = function(m, format) {
+ return d3_scale_linearTickFormat(domain, m, format);
+ };
+ identity.copy = function() {
+ return d3_scale_identity(domain);
+ };
+ return identity;
+ }
+ d3.svg = {};
+ function d3_zero() {
+ return 0;
+ }
+ d3.svg.arc = function() {
+ var innerRadius = d3_svg_arcInnerRadius, outerRadius = d3_svg_arcOuterRadius, cornerRadius = d3_zero, padRadius = d3_svg_arcAuto, startAngle = d3_svg_arcStartAngle, endAngle = d3_svg_arcEndAngle, padAngle = d3_svg_arcPadAngle;
+ function arc() {
+ var r0 = Math.max(0, +innerRadius.apply(this, arguments)), r1 = Math.max(0, +outerRadius.apply(this, arguments)), a0 = startAngle.apply(this, arguments) - halfπ, a1 = endAngle.apply(this, arguments) - halfπ, da = Math.abs(a1 - a0), cw = a0 > a1 ? 0 : 1;
+ if (r1 < r0) rc = r1, r1 = r0, r0 = rc;
+ if (da >= τε) return circleSegment(r1, cw) + (r0 ? circleSegment(r0, 1 - cw) : "") + "Z";
+ var rc, cr, rp, ap, p0 = 0, p1 = 0, x0, y0, x1, y1, x2, y2, x3, y3, path = [];
+ if (ap = (+padAngle.apply(this, arguments) || 0) / 2) {
+ rp = padRadius === d3_svg_arcAuto ? Math.sqrt(r0 * r0 + r1 * r1) : +padRadius.apply(this, arguments);
+ if (!cw) p1 *= -1;
+ if (r1) p1 = d3_asin(rp / r1 * Math.sin(ap));
+ if (r0) p0 = d3_asin(rp / r0 * Math.sin(ap));
+ }
+ if (r1) {
+ x0 = r1 * Math.cos(a0 + p1);
+ y0 = r1 * Math.sin(a0 + p1);
+ x1 = r1 * Math.cos(a1 - p1);
+ y1 = r1 * Math.sin(a1 - p1);
+ var l1 = Math.abs(a1 - a0 - 2 * p1) <= π ? 0 : 1;
+ if (p1 && d3_svg_arcSweep(x0, y0, x1, y1) === cw ^ l1) {
+ var h1 = (a0 + a1) / 2;
+ x0 = r1 * Math.cos(h1);
+ y0 = r1 * Math.sin(h1);
+ x1 = y1 = null;
+ }
+ } else {
+ x0 = y0 = 0;
+ }
+ if (r0) {
+ x2 = r0 * Math.cos(a1 - p0);
+ y2 = r0 * Math.sin(a1 - p0);
+ x3 = r0 * Math.cos(a0 + p0);
+ y3 = r0 * Math.sin(a0 + p0);
+ var l0 = Math.abs(a0 - a1 + 2 * p0) <= π ? 0 : 1;
+ if (p0 && d3_svg_arcSweep(x2, y2, x3, y3) === 1 - cw ^ l0) {
+ var h0 = (a0 + a1) / 2;
+ x2 = r0 * Math.cos(h0);
+ y2 = r0 * Math.sin(h0);
+ x3 = y3 = null;
+ }
+ } else {
+ x2 = y2 = 0;
+ }
+ if ((rc = Math.min(Math.abs(r1 - r0) / 2, +cornerRadius.apply(this, arguments))) > .001) {
+ cr = r0 < r1 ^ cw ? 0 : 1;
+ var oc = x3 == null ? [ x2, y2 ] : x1 == null ? [ x0, y0 ] : d3_geom_polygonIntersect([ x0, y0 ], [ x3, y3 ], [ x1, y1 ], [ x2, y2 ]), ax = x0 - oc[0], ay = y0 - oc[1], bx = x1 - oc[0], by = y1 - oc[1], kc = 1 / Math.sin(Math.acos((ax * bx + ay * by) / (Math.sqrt(ax * ax + ay * ay) * Math.sqrt(bx * bx + by * by))) / 2), lc = Math.sqrt(oc[0] * oc[0] + oc[1] * oc[1]);
+ if (x1 != null) {
+ var rc1 = Math.min(rc, (r1 - lc) / (kc + 1)), t30 = d3_svg_arcCornerTangents(x3 == null ? [ x2, y2 ] : [ x3, y3 ], [ x0, y0 ], r1, rc1, cw), t12 = d3_svg_arcCornerTangents([ x1, y1 ], [ x2, y2 ], r1, rc1, cw);
+ if (rc === rc1) {
+ path.push("M", t30[0], "A", rc1, ",", rc1, " 0 0,", cr, " ", t30[1], "A", r1, ",", r1, " 0 ", 1 - cw ^ d3_svg_arcSweep(t30[1][0], t30[1][1], t12[1][0], t12[1][1]), ",", cw, " ", t12[1], "A", rc1, ",", rc1, " 0 0,", cr, " ", t12[0]);
+ } else {
+ path.push("M", t30[0], "A", rc1, ",", rc1, " 0 1,", cr, " ", t12[0]);
+ }
+ } else {
+ path.push("M", x0, ",", y0);
+ }
+ if (x3 != null) {
+ var rc0 = Math.min(rc, (r0 - lc) / (kc - 1)), t03 = d3_svg_arcCornerTangents([ x0, y0 ], [ x3, y3 ], r0, -rc0, cw), t21 = d3_svg_arcCornerTangents([ x2, y2 ], x1 == null ? [ x0, y0 ] : [ x1, y1 ], r0, -rc0, cw);
+ if (rc === rc0) {
+ path.push("L", t21[0], "A", rc0, ",", rc0, " 0 0,", cr, " ", t21[1], "A", r0, ",", r0, " 0 ", cw ^ d3_svg_arcSweep(t21[1][0], t21[1][1], t03[1][0], t03[1][1]), ",", 1 - cw, " ", t03[1], "A", rc0, ",", rc0, " 0 0,", cr, " ", t03[0]);
+ } else {
+ path.push("L", t21[0], "A", rc0, ",", rc0, " 0 0,", cr, " ", t03[0]);
+ }
+ } else {
+ path.push("L", x2, ",", y2);
+ }
+ } else {
+ path.push("M", x0, ",", y0);
+ if (x1 != null) path.push("A", r1, ",", r1, " 0 ", l1, ",", cw, " ", x1, ",", y1);
+ path.push("L", x2, ",", y2);
+ if (x3 != null) path.push("A", r0, ",", r0, " 0 ", l0, ",", 1 - cw, " ", x3, ",", y3);
+ }
+ path.push("Z");
+ return path.join("");
+ }
+ function circleSegment(r1, cw) {
+ return "M0," + r1 + "A" + r1 + "," + r1 + " 0 1," + cw + " 0," + -r1 + "A" + r1 + "," + r1 + " 0 1," + cw + " 0," + r1;
+ }
+ arc.innerRadius = function(v) {
+ if (!arguments.length) return innerRadius;
+ innerRadius = d3_functor(v);
+ return arc;
+ };
+ arc.outerRadius = function(v) {
+ if (!arguments.length) return outerRadius;
+ outerRadius = d3_functor(v);
+ return arc;
+ };
+ arc.cornerRadius = function(v) {
+ if (!arguments.length) return cornerRadius;
+ cornerRadius = d3_functor(v);
+ return arc;
+ };
+ arc.padRadius = function(v) {
+ if (!arguments.length) return padRadius;
+ padRadius = v == d3_svg_arcAuto ? d3_svg_arcAuto : d3_functor(v);
+ return arc;
+ };
+ arc.startAngle = function(v) {
+ if (!arguments.length) return startAngle;
+ startAngle = d3_functor(v);
+ return arc;
+ };
+ arc.endAngle = function(v) {
+ if (!arguments.length) return endAngle;
+ endAngle = d3_functor(v);
+ return arc;
+ };
+ arc.padAngle = function(v) {
+ if (!arguments.length) return padAngle;
+ padAngle = d3_functor(v);
+ return arc;
+ };
+ arc.centroid = function() {
+ var r = (+innerRadius.apply(this, arguments) + +outerRadius.apply(this, arguments)) / 2, a = (+startAngle.apply(this, arguments) + +endAngle.apply(this, arguments)) / 2 - halfπ;
+ return [ Math.cos(a) * r, Math.sin(a) * r ];
+ };
+ return arc;
+ };
+ var d3_svg_arcAuto = "auto";
+ function d3_svg_arcInnerRadius(d) {
+ return d.innerRadius;
+ }
+ function d3_svg_arcOuterRadius(d) {
+ return d.outerRadius;
+ }
+ function d3_svg_arcStartAngle(d) {
+ return d.startAngle;
+ }
+ function d3_svg_arcEndAngle(d) {
+ return d.endAngle;
+ }
+ function d3_svg_arcPadAngle(d) {
+ return d && d.padAngle;
+ }
+ function d3_svg_arcSweep(x0, y0, x1, y1) {
+ return (x0 - x1) * y0 - (y0 - y1) * x0 > 0 ? 0 : 1;
+ }
+ function d3_svg_arcCornerTangents(p0, p1, r1, rc, cw) {
+ var x01 = p0[0] - p1[0], y01 = p0[1] - p1[1], lo = (cw ? rc : -rc) / Math.sqrt(x01 * x01 + y01 * y01), ox = lo * y01, oy = -lo * x01, x1 = p0[0] + ox, y1 = p0[1] + oy, x2 = p1[0] + ox, y2 = p1[1] + oy, x3 = (x1 + x2) / 2, y3 = (y1 + y2) / 2, dx = x2 - x1, dy = y2 - y1, d2 = dx * dx + dy * dy, r = r1 - rc, D = x1 * y2 - x2 * y1, d = (dy < 0 ? -1 : 1) * Math.sqrt(r * r * d2 - D * D), cx0 = (D * dy - dx * d) / d2, cy0 = (-D * dx - dy * d) / d2, cx1 = (D * dy + dx * d) / d2, cy1 = (-D * dx + dy * d) / d2, dx0 = cx0 - x3, dy0 = cy0 - y3, dx1 = cx1 - x3, dy1 = cy1 - y3;
+ if (dx0 * dx0 + dy0 * dy0 > dx1 * dx1 + dy1 * dy1) cx0 = cx1, cy0 = cy1;
+ return [ [ cx0 - ox, cy0 - oy ], [ cx0 * r1 / r, cy0 * r1 / r ] ];
+ }
+ function d3_svg_line(projection) {
+ var x = d3_geom_pointX, y = d3_geom_pointY, defined = d3_true, interpolate = d3_svg_lineLinear, interpolateKey = interpolate.key, tension = .7;
+ function line(data) {
+ var segments = [], points = [], i = -1, n = data.length, d, fx = d3_functor(x), fy = d3_functor(y);
+ function segment() {
+ segments.push("M", interpolate(projection(points), tension));
+ }
+ while (++i < n) {
+ if (defined.call(this, d = data[i], i)) {
+ points.push([ +fx.call(this, d, i), +fy.call(this, d, i) ]);
+ } else if (points.length) {
+ segment();
+ points = [];
+ }
+ }
+ if (points.length) segment();
+ return segments.length ? segments.join("") : null;
+ }
+ line.x = function(_) {
+ if (!arguments.length) return x;
+ x = _;
+ return line;
+ };
+ line.y = function(_) {
+ if (!arguments.length) return y;
+ y = _;
+ return line;
+ };
+ line.defined = function(_) {
+ if (!arguments.length) return defined;
+ defined = _;
+ return line;
+ };
+ line.interpolate = function(_) {
+ if (!arguments.length) return interpolateKey;
+ if (typeof _ === "function") interpolateKey = interpolate = _; else interpolateKey = (interpolate = d3_svg_lineInterpolators.get(_) || d3_svg_lineLinear).key;
+ return line;
+ };
+ line.tension = function(_) {
+ if (!arguments.length) return tension;
+ tension = _;
+ return line;
+ };
+ return line;
+ }
+ d3.svg.line = function() {
+ return d3_svg_line(d3_identity);
+ };
+ var d3_svg_lineInterpolators = d3.map({
+ linear: d3_svg_lineLinear,
+ "linear-closed": d3_svg_lineLinearClosed,
+ step: d3_svg_lineStep,
+ "step-before": d3_svg_lineStepBefore,
+ "step-after": d3_svg_lineStepAfter,
+ basis: d3_svg_lineBasis,
+ "basis-open": d3_svg_lineBasisOpen,
+ "basis-closed": d3_svg_lineBasisClosed,
+ bundle: d3_svg_lineBundle,
+ cardinal: d3_svg_lineCardinal,
+ "cardinal-open": d3_svg_lineCardinalOpen,
+ "cardinal-closed": d3_svg_lineCardinalClosed,
+ monotone: d3_svg_lineMonotone
+ });
+ d3_svg_lineInterpolators.forEach(function(key, value) {
+ value.key = key;
+ value.closed = /-closed$/.test(key);
+ });
+ function d3_svg_lineLinear(points) {
+ return points.join("L");
+ }
+ function d3_svg_lineLinearClosed(points) {
+ return d3_svg_lineLinear(points) + "Z";
+ }
+ function d3_svg_lineStep(points) {
+ var i = 0, n = points.length, p = points[0], path = [ p[0], ",", p[1] ];
+ while (++i < n) path.push("H", (p[0] + (p = points[i])[0]) / 2, "V", p[1]);
+ if (n > 1) path.push("H", p[0]);
+ return path.join("");
+ }
+ function d3_svg_lineStepBefore(points) {
+ var i = 0, n = points.length, p = points[0], path = [ p[0], ",", p[1] ];
+ while (++i < n) path.push("V", (p = points[i])[1], "H", p[0]);
+ return path.join("");
+ }
+ function d3_svg_lineStepAfter(points) {
+ var i = 0, n = points.length, p = points[0], path = [ p[0], ",", p[1] ];
+ while (++i < n) path.push("H", (p = points[i])[0], "V", p[1]);
+ return path.join("");
+ }
+ function d3_svg_lineCardinalOpen(points, tension) {
+ return points.length < 4 ? d3_svg_lineLinear(points) : points[1] + d3_svg_lineHermite(points.slice(1, -1), d3_svg_lineCardinalTangents(points, tension));
+ }
+ function d3_svg_lineCardinalClosed(points, tension) {
+ return points.length < 3 ? d3_svg_lineLinear(points) : points[0] + d3_svg_lineHermite((points.push(points[0]),
+ points), d3_svg_lineCardinalTangents([ points[points.length - 2] ].concat(points, [ points[1] ]), tension));
+ }
+ function d3_svg_lineCardinal(points, tension) {
+ return points.length < 3 ? d3_svg_lineLinear(points) : points[0] + d3_svg_lineHermite(points, d3_svg_lineCardinalTangents(points, tension));
+ }
+ function d3_svg_lineHermite(points, tangents) {
+ if (tangents.length < 1 || points.length != tangents.length && points.length != tangents.length + 2) {
+ return d3_svg_lineLinear(points);
+ }
+ var quad = points.length != tangents.length, path = "", p0 = points[0], p = points[1], t0 = tangents[0], t = t0, pi = 1;
+ if (quad) {
+ path += "Q" + (p[0] - t0[0] * 2 / 3) + "," + (p[1] - t0[1] * 2 / 3) + "," + p[0] + "," + p[1];
+ p0 = points[1];
+ pi = 2;
+ }
+ if (tangents.length > 1) {
+ t = tangents[1];
+ p = points[pi];
+ pi++;
+ path += "C" + (p0[0] + t0[0]) + "," + (p0[1] + t0[1]) + "," + (p[0] - t[0]) + "," + (p[1] - t[1]) + "," + p[0] + "," + p[1];
+ for (var i = 2; i < tangents.length; i++, pi++) {
+ p = points[pi];
+ t = tangents[i];
+ path += "S" + (p[0] - t[0]) + "," + (p[1] - t[1]) + "," + p[0] + "," + p[1];
+ }
+ }
+ if (quad) {
+ var lp = points[pi];
+ path += "Q" + (p[0] + t[0] * 2 / 3) + "," + (p[1] + t[1] * 2 / 3) + "," + lp[0] + "," + lp[1];
+ }
+ return path;
+ }
+ function d3_svg_lineCardinalTangents(points, tension) {
+ var tangents = [], a = (1 - tension) / 2, p0, p1 = points[0], p2 = points[1], i = 1, n = points.length;
+ while (++i < n) {
+ p0 = p1;
+ p1 = p2;
+ p2 = points[i];
+ tangents.push([ a * (p2[0] - p0[0]), a * (p2[1] - p0[1]) ]);
+ }
+ return tangents;
+ }
+ function d3_svg_lineBasis(points) {
+ if (points.length < 3) return d3_svg_lineLinear(points);
+ var i = 1, n = points.length, pi = points[0], x0 = pi[0], y0 = pi[1], px = [ x0, x0, x0, (pi = points[1])[0] ], py = [ y0, y0, y0, pi[1] ], path = [ x0, ",", y0, "L", d3_svg_lineDot4(d3_svg_lineBasisBezier3, px), ",", d3_svg_lineDot4(d3_svg_lineBasisBezier3, py) ];
+ points.push(points[n - 1]);
+ while (++i <= n) {
+ pi = points[i];
+ px.shift();
+ px.push(pi[0]);
+ py.shift();
+ py.push(pi[1]);
+ d3_svg_lineBasisBezier(path, px, py);
+ }
+ points.pop();
+ path.push("L", pi);
+ return path.join("");
+ }
+ function d3_svg_lineBasisOpen(points) {
+ if (points.length < 4) return d3_svg_lineLinear(points);
+ var path = [], i = -1, n = points.length, pi, px = [ 0 ], py = [ 0 ];
+ while (++i < 3) {
+ pi = points[i];
+ px.push(pi[0]);
+ py.push(pi[1]);
+ }
+ path.push(d3_svg_lineDot4(d3_svg_lineBasisBezier3, px) + "," + d3_svg_lineDot4(d3_svg_lineBasisBezier3, py));
+ --i;
+ while (++i < n) {
+ pi = points[i];
+ px.shift();
+ px.push(pi[0]);
+ py.shift();
+ py.push(pi[1]);
+ d3_svg_lineBasisBezier(path, px, py);
+ }
+ return path.join("");
+ }
+ function d3_svg_lineBasisClosed(points) {
+ var path, i = -1, n = points.length, m = n + 4, pi, px = [], py = [];
+ while (++i < 4) {
+ pi = points[i % n];
+ px.push(pi[0]);
+ py.push(pi[1]);
+ }
+ path = [ d3_svg_lineDot4(d3_svg_lineBasisBezier3, px), ",", d3_svg_lineDot4(d3_svg_lineBasisBezier3, py) ];
+ --i;
+ while (++i < m) {
+ pi = points[i % n];
+ px.shift();
+ px.push(pi[0]);
+ py.shift();
+ py.push(pi[1]);
+ d3_svg_lineBasisBezier(path, px, py);
+ }
+ return path.join("");
+ }
+ function d3_svg_lineBundle(points, tension) {
+ var n = points.length - 1;
+ if (n) {
+ var x0 = points[0][0], y0 = points[0][1], dx = points[n][0] - x0, dy = points[n][1] - y0, i = -1, p, t;
+ while (++i <= n) {
+ p = points[i];
+ t = i / n;
+ p[0] = tension * p[0] + (1 - tension) * (x0 + t * dx);
+ p[1] = tension * p[1] + (1 - tension) * (y0 + t * dy);
+ }
+ }
+ return d3_svg_lineBasis(points);
+ }
+ function d3_svg_lineDot4(a, b) {
+ return a[0] * b[0] + a[1] * b[1] + a[2] * b[2] + a[3] * b[3];
+ }
+ var d3_svg_lineBasisBezier1 = [ 0, 2 / 3, 1 / 3, 0 ], d3_svg_lineBasisBezier2 = [ 0, 1 / 3, 2 / 3, 0 ], d3_svg_lineBasisBezier3 = [ 0, 1 / 6, 2 / 3, 1 / 6 ];
+ function d3_svg_lineBasisBezier(path, x, y) {
+ path.push("C", d3_svg_lineDot4(d3_svg_lineBasisBezier1, x), ",", d3_svg_lineDot4(d3_svg_lineBasisBezier1, y), ",", d3_svg_lineDot4(d3_svg_lineBasisBezier2, x), ",", d3_svg_lineDot4(d3_svg_lineBasisBezier2, y), ",", d3_svg_lineDot4(d3_svg_lineBasisBezier3, x), ",", d3_svg_lineDot4(d3_svg_lineBasisBezier3, y));
+ }
+ function d3_svg_lineSlope(p0, p1) {
+ return (p1[1] - p0[1]) / (p1[0] - p0[0]);
+ }
+ function d3_svg_lineFiniteDifferences(points) {
+ var i = 0, j = points.length - 1, m = [], p0 = points[0], p1 = points[1], d = m[0] = d3_svg_lineSlope(p0, p1);
+ while (++i < j) {
+ m[i] = (d + (d = d3_svg_lineSlope(p0 = p1, p1 = points[i + 1]))) / 2;
+ }
+ m[i] = d;
+ return m;
+ }
+ function d3_svg_lineMonotoneTangents(points) {
+ var tangents = [], d, a, b, s, m = d3_svg_lineFiniteDifferences(points), i = -1, j = points.length - 1;
+ while (++i < j) {
+ d = d3_svg_lineSlope(points[i], points[i + 1]);
+ if (abs(d) < ε) {
+ m[i] = m[i + 1] = 0;
+ } else {
+ a = m[i] / d;
+ b = m[i + 1] / d;
+ s = a * a + b * b;
+ if (s > 9) {
+ s = d * 3 / Math.sqrt(s);
+ m[i] = s * a;
+ m[i + 1] = s * b;
+ }
+ }
+ }
+ i = -1;
+ while (++i <= j) {
+ s = (points[Math.min(j, i + 1)][0] - points[Math.max(0, i - 1)][0]) / (6 * (1 + m[i] * m[i]));
+ tangents.push([ s || 0, m[i] * s || 0 ]);
+ }
+ return tangents;
+ }
+ function d3_svg_lineMonotone(points) {
+ return points.length < 3 ? d3_svg_lineLinear(points) : points[0] + d3_svg_lineHermite(points, d3_svg_lineMonotoneTangents(points));
+ }
+ d3.svg.line.radial = function() {
+ var line = d3_svg_line(d3_svg_lineRadial);
+ line.radius = line.x, delete line.x;
+ line.angle = line.y, delete line.y;
+ return line;
+ };
+ function d3_svg_lineRadial(points) {
+ var point, i = -1, n = points.length, r, a;
+ while (++i < n) {
+ point = points[i];
+ r = point[0];
+ a = point[1] - halfπ;
+ point[0] = r * Math.cos(a);
+ point[1] = r * Math.sin(a);
+ }
+ return points;
+ }
+ function d3_svg_area(projection) {
+ var x0 = d3_geom_pointX, x1 = d3_geom_pointX, y0 = 0, y1 = d3_geom_pointY, defined = d3_true, interpolate = d3_svg_lineLinear, interpolateKey = interpolate.key, interpolateReverse = interpolate, L = "L", tension = .7;
+ function area(data) {
+ var segments = [], points0 = [], points1 = [], i = -1, n = data.length, d, fx0 = d3_functor(x0), fy0 = d3_functor(y0), fx1 = x0 === x1 ? function() {
+ return x;
+ } : d3_functor(x1), fy1 = y0 === y1 ? function() {
+ return y;
+ } : d3_functor(y1), x, y;
+ function segment() {
+ segments.push("M", interpolate(projection(points1), tension), L, interpolateReverse(projection(points0.reverse()), tension), "Z");
+ }
+ while (++i < n) {
+ if (defined.call(this, d = data[i], i)) {
+ points0.push([ x = +fx0.call(this, d, i), y = +fy0.call(this, d, i) ]);
+ points1.push([ +fx1.call(this, d, i), +fy1.call(this, d, i) ]);
+ } else if (points0.length) {
+ segment();
+ points0 = [];
+ points1 = [];
+ }
+ }
+ if (points0.length) segment();
+ return segments.length ? segments.join("") : null;
+ }
+ area.x = function(_) {
+ if (!arguments.length) return x1;
+ x0 = x1 = _;
+ return area;
+ };
+ area.x0 = function(_) {
+ if (!arguments.length) return x0;
+ x0 = _;
+ return area;
+ };
+ area.x1 = function(_) {
+ if (!arguments.length) return x1;
+ x1 = _;
+ return area;
+ };
+ area.y = function(_) {
+ if (!arguments.length) return y1;
+ y0 = y1 = _;
+ return area;
+ };
+ area.y0 = function(_) {
+ if (!arguments.length) return y0;
+ y0 = _;
+ return area;
+ };
+ area.y1 = function(_) {
+ if (!arguments.length) return y1;
+ y1 = _;
+ return area;
+ };
+ area.defined = function(_) {
+ if (!arguments.length) return defined;
+ defined = _;
+ return area;
+ };
+ area.interpolate = function(_) {
+ if (!arguments.length) return interpolateKey;
+ if (typeof _ === "function") interpolateKey = interpolate = _; else interpolateKey = (interpolate = d3_svg_lineInterpolators.get(_) || d3_svg_lineLinear).key;
+ interpolateReverse = interpolate.reverse || interpolate;
+ L = interpolate.closed ? "M" : "L";
+ return area;
+ };
+ area.tension = function(_) {
+ if (!arguments.length) return tension;
+ tension = _;
+ return area;
+ };
+ return area;
+ }
+ d3_svg_lineStepBefore.reverse = d3_svg_lineStepAfter;
+ d3_svg_lineStepAfter.reverse = d3_svg_lineStepBefore;
+ d3.svg.area = function() {
+ return d3_svg_area(d3_identity);
+ };
+ d3.svg.area.radial = function() {
+ var area = d3_svg_area(d3_svg_lineRadial);
+ area.radius = area.x, delete area.x;
+ area.innerRadius = area.x0, delete area.x0;
+ area.outerRadius = area.x1, delete area.x1;
+ area.angle = area.y, delete area.y;
+ area.startAngle = area.y0, delete area.y0;
+ area.endAngle = area.y1, delete area.y1;
+ return area;
+ };
+ d3.svg.chord = function() {
+ var source = d3_source, target = d3_target, radius = d3_svg_chordRadius, startAngle = d3_svg_arcStartAngle, endAngle = d3_svg_arcEndAngle;
+ function chord(d, i) {
+ var s = subgroup(this, source, d, i), t = subgroup(this, target, d, i);
+ return "M" + s.p0 + arc(s.r, s.p1, s.a1 - s.a0) + (equals(s, t) ? curve(s.r, s.p1, s.r, s.p0) : curve(s.r, s.p1, t.r, t.p0) + arc(t.r, t.p1, t.a1 - t.a0) + curve(t.r, t.p1, s.r, s.p0)) + "Z";
+ }
+ function subgroup(self, f, d, i) {
+ var subgroup = f.call(self, d, i), r = radius.call(self, subgroup, i), a0 = startAngle.call(self, subgroup, i) - halfπ, a1 = endAngle.call(self, subgroup, i) - halfπ;
+ return {
+ r: r,
+ a0: a0,
+ a1: a1,
+ p0: [ r * Math.cos(a0), r * Math.sin(a0) ],
+ p1: [ r * Math.cos(a1), r * Math.sin(a1) ]
+ };
+ }
+ function equals(a, b) {
+ return a.a0 == b.a0 && a.a1 == b.a1;
+ }
+ function arc(r, p, a) {
+ return "A" + r + "," + r + " 0 " + +(a > π) + ",1 " + p;
+ }
+ function curve(r0, p0, r1, p1) {
+ return "Q 0,0 " + p1;
+ }
+ chord.radius = function(v) {
+ if (!arguments.length) return radius;
+ radius = d3_functor(v);
+ return chord;
+ };
+ chord.source = function(v) {
+ if (!arguments.length) return source;
+ source = d3_functor(v);
+ return chord;
+ };
+ chord.target = function(v) {
+ if (!arguments.length) return target;
+ target = d3_functor(v);
+ return chord;
+ };
+ chord.startAngle = function(v) {
+ if (!arguments.length) return startAngle;
+ startAngle = d3_functor(v);
+ return chord;
+ };
+ chord.endAngle = function(v) {
+ if (!arguments.length) return endAngle;
+ endAngle = d3_functor(v);
+ return chord;
+ };
+ return chord;
+ };
+ function d3_svg_chordRadius(d) {
+ return d.radius;
+ }
+ d3.svg.diagonal = function() {
+ var source = d3_source, target = d3_target, projection = d3_svg_diagonalProjection;
+ function diagonal(d, i) {
+ var p0 = source.call(this, d, i), p3 = target.call(this, d, i), m = (p0.y + p3.y) / 2, p = [ p0, {
+ x: p0.x,
+ y: m
+ }, {
+ x: p3.x,
+ y: m
+ }, p3 ];
+ p = p.map(projection);
+ return "M" + p[0] + "C" + p[1] + " " + p[2] + " " + p[3];
+ }
+ diagonal.source = function(x) {
+ if (!arguments.length) return source;
+ source = d3_functor(x);
+ return diagonal;
+ };
+ diagonal.target = function(x) {
+ if (!arguments.length) return target;
+ target = d3_functor(x);
+ return diagonal;
+ };
+ diagonal.projection = function(x) {
+ if (!arguments.length) return projection;
+ projection = x;
+ return diagonal;
+ };
+ return diagonal;
+ };
+ function d3_svg_diagonalProjection(d) {
+ return [ d.x, d.y ];
+ }
+ d3.svg.diagonal.radial = function() {
+ var diagonal = d3.svg.diagonal(), projection = d3_svg_diagonalProjection, projection_ = diagonal.projection;
+ diagonal.projection = function(x) {
+ return arguments.length ? projection_(d3_svg_diagonalRadialProjection(projection = x)) : projection;
+ };
+ return diagonal;
+ };
+ function d3_svg_diagonalRadialProjection(projection) {
+ return function() {
+ var d = projection.apply(this, arguments), r = d[0], a = d[1] - halfπ;
+ return [ r * Math.cos(a), r * Math.sin(a) ];
+ };
+ }
+ d3.svg.symbol = function() {
+ var type = d3_svg_symbolType, size = d3_svg_symbolSize;
+ function symbol(d, i) {
+ return (d3_svg_symbols.get(type.call(this, d, i)) || d3_svg_symbolCircle)(size.call(this, d, i));
+ }
+ symbol.type = function(x) {
+ if (!arguments.length) return type;
+ type = d3_functor(x);
+ return symbol;
+ };
+ symbol.size = function(x) {
+ if (!arguments.length) return size;
+ size = d3_functor(x);
+ return symbol;
+ };
+ return symbol;
+ };
+ function d3_svg_symbolSize() {
+ return 64;
+ }
+ function d3_svg_symbolType() {
+ return "circle";
+ }
+ function d3_svg_symbolCircle(size) {
+ var r = Math.sqrt(size / π);
+ return "M0," + r + "A" + r + "," + r + " 0 1,1 0," + -r + "A" + r + "," + r + " 0 1,1 0," + r + "Z";
+ }
+ var d3_svg_symbols = d3.map({
+ circle: d3_svg_symbolCircle,
+ cross: function(size) {
+ var r = Math.sqrt(size / 5) / 2;
+ return "M" + -3 * r + "," + -r + "H" + -r + "V" + -3 * r + "H" + r + "V" + -r + "H" + 3 * r + "V" + r + "H" + r + "V" + 3 * r + "H" + -r + "V" + r + "H" + -3 * r + "Z";
+ },
+ diamond: function(size) {
+ var ry = Math.sqrt(size / (2 * d3_svg_symbolTan30)), rx = ry * d3_svg_symbolTan30;
+ return "M0," + -ry + "L" + rx + ",0" + " 0," + ry + " " + -rx + ",0" + "Z";
+ },
+ square: function(size) {
+ var r = Math.sqrt(size) / 2;
+ return "M" + -r + "," + -r + "L" + r + "," + -r + " " + r + "," + r + " " + -r + "," + r + "Z";
+ },
+ "triangle-down": function(size) {
+ var rx = Math.sqrt(size / d3_svg_symbolSqrt3), ry = rx * d3_svg_symbolSqrt3 / 2;
+ return "M0," + ry + "L" + rx + "," + -ry + " " + -rx + "," + -ry + "Z";
+ },
+ "triangle-up": function(size) {
+ var rx = Math.sqrt(size / d3_svg_symbolSqrt3), ry = rx * d3_svg_symbolSqrt3 / 2;
+ return "M0," + -ry + "L" + rx + "," + ry + " " + -rx + "," + ry + "Z";
+ }
+ });
+ d3.svg.symbolTypes = d3_svg_symbols.keys();
+ var d3_svg_symbolSqrt3 = Math.sqrt(3), d3_svg_symbolTan30 = Math.tan(30 * d3_radians);
+ d3_selectionPrototype.transition = function(name) {
+ var id = d3_transitionInheritId || ++d3_transitionId, ns = d3_transitionNamespace(name), subgroups = [], subgroup, node, transition = d3_transitionInherit || {
+ time: Date.now(),
+ ease: d3_ease_cubicInOut,
+ delay: 0,
+ duration: 250
+ };
+ for (var j = -1, m = this.length; ++j < m; ) {
+ subgroups.push(subgroup = []);
+ for (var group = this[j], i = -1, n = group.length; ++i < n; ) {
+ if (node = group[i]) d3_transitionNode(node, i, ns, id, transition);
+ subgroup.push(node);
+ }
+ }
+ return d3_transition(subgroups, ns, id);
+ };
+ d3_selectionPrototype.interrupt = function(name) {
+ return this.each(name == null ? d3_selection_interrupt : d3_selection_interruptNS(d3_transitionNamespace(name)));
+ };
+ var d3_selection_interrupt = d3_selection_interruptNS(d3_transitionNamespace());
+ function d3_selection_interruptNS(ns) {
+ return function() {
+ var lock, active;
+ if ((lock = this[ns]) && (active = lock[lock.active])) {
+ if (--lock.count) delete lock[lock.active]; else delete this[ns];
+ lock.active += .5;
+ active.event && active.event.interrupt.call(this, this.__data__, active.index);
+ }
+ };
+ }
+ function d3_transition(groups, ns, id) {
+ d3_subclass(groups, d3_transitionPrototype);
+ groups.namespace = ns;
+ groups.id = id;
+ return groups;
+ }
+ var d3_transitionPrototype = [], d3_transitionId = 0, d3_transitionInheritId, d3_transitionInherit;
+ d3_transitionPrototype.call = d3_selectionPrototype.call;
+ d3_transitionPrototype.empty = d3_selectionPrototype.empty;
+ d3_transitionPrototype.node = d3_selectionPrototype.node;
+ d3_transitionPrototype.size = d3_selectionPrototype.size;
+ d3.transition = function(selection, name) {
+ return selection && selection.transition ? d3_transitionInheritId ? selection.transition(name) : selection : d3.selection().transition(selection);
+ };
+ d3.transition.prototype = d3_transitionPrototype;
+ d3_transitionPrototype.select = function(selector) {
+ var id = this.id, ns = this.namespace, subgroups = [], subgroup, subnode, node;
+ selector = d3_selection_selector(selector);
+ for (var j = -1, m = this.length; ++j < m; ) {
+ subgroups.push(subgroup = []);
+ for (var group = this[j], i = -1, n = group.length; ++i < n; ) {
+ if ((node = group[i]) && (subnode = selector.call(node, node.__data__, i, j))) {
+ if ("__data__" in node) subnode.__data__ = node.__data__;
+ d3_transitionNode(subnode, i, ns, id, node[ns][id]);
+ subgroup.push(subnode);
+ } else {
+ subgroup.push(null);
+ }
+ }
+ }
+ return d3_transition(subgroups, ns, id);
+ };
+ d3_transitionPrototype.selectAll = function(selector) {
+ var id = this.id, ns = this.namespace, subgroups = [], subgroup, subnodes, node, subnode, transition;
+ selector = d3_selection_selectorAll(selector);
+ for (var j = -1, m = this.length; ++j < m; ) {
+ for (var group = this[j], i = -1, n = group.length; ++i < n; ) {
+ if (node = group[i]) {
+ transition = node[ns][id];
+ subnodes = selector.call(node, node.__data__, i, j);
+ subgroups.push(subgroup = []);
+ for (var k = -1, o = subnodes.length; ++k < o; ) {
+ if (subnode = subnodes[k]) d3_transitionNode(subnode, k, ns, id, transition);
+ subgroup.push(subnode);
+ }
+ }
+ }
+ }
+ return d3_transition(subgroups, ns, id);
+ };
+ d3_transitionPrototype.filter = function(filter) {
+ var subgroups = [], subgroup, group, node;
+ if (typeof filter !== "function") filter = d3_selection_filter(filter);
+ for (var j = 0, m = this.length; j < m; j++) {
+ subgroups.push(subgroup = []);
+ for (var group = this[j], i = 0, n = group.length; i < n; i++) {
+ if ((node = group[i]) && filter.call(node, node.__data__, i, j)) {
+ subgroup.push(node);
+ }
+ }
+ }
+ return d3_transition(subgroups, this.namespace, this.id);
+ };
+ d3_transitionPrototype.tween = function(name, tween) {
+ var id = this.id, ns = this.namespace;
+ if (arguments.length < 2) return this.node()[ns][id].tween.get(name);
+ return d3_selection_each(this, tween == null ? function(node) {
+ node[ns][id].tween.remove(name);
+ } : function(node) {
+ node[ns][id].tween.set(name, tween);
+ });
+ };
+ function d3_transition_tween(groups, name, value, tween) {
+ var id = groups.id, ns = groups.namespace;
+ return d3_selection_each(groups, typeof value === "function" ? function(node, i, j) {
+ node[ns][id].tween.set(name, tween(value.call(node, node.__data__, i, j)));
+ } : (value = tween(value), function(node) {
+ node[ns][id].tween.set(name, value);
+ }));
+ }
+ d3_transitionPrototype.attr = function(nameNS, value) {
+ if (arguments.length < 2) {
+ for (value in nameNS) this.attr(value, nameNS[value]);
+ return this;
+ }
+ var interpolate = nameNS == "transform" ? d3_interpolateTransform : d3_interpolate, name = d3.ns.qualify(nameNS);
+ function attrNull() {
+ this.removeAttribute(name);
+ }
+ function attrNullNS() {
+ this.removeAttributeNS(name.space, name.local);
+ }
+ function attrTween(b) {
+ return b == null ? attrNull : (b += "", function() {
+ var a = this.getAttribute(name), i;
+ return a !== b && (i = interpolate(a, b), function(t) {
+ this.setAttribute(name, i(t));
+ });
+ });
+ }
+ function attrTweenNS(b) {
+ return b == null ? attrNullNS : (b += "", function() {
+ var a = this.getAttributeNS(name.space, name.local), i;
+ return a !== b && (i = interpolate(a, b), function(t) {
+ this.setAttributeNS(name.space, name.local, i(t));
+ });
+ });
+ }
+ return d3_transition_tween(this, "attr." + nameNS, value, name.local ? attrTweenNS : attrTween);
+ };
+ d3_transitionPrototype.attrTween = function(nameNS, tween) {
+ var name = d3.ns.qualify(nameNS);
+ function attrTween(d, i) {
+ var f = tween.call(this, d, i, this.getAttribute(name));
+ return f && function(t) {
+ this.setAttribute(name, f(t));
+ };
+ }
+ function attrTweenNS(d, i) {
+ var f = tween.call(this, d, i, this.getAttributeNS(name.space, name.local));
+ return f && function(t) {
+ this.setAttributeNS(name.space, name.local, f(t));
+ };
+ }
+ return this.tween("attr." + nameNS, name.local ? attrTweenNS : attrTween);
+ };
+ d3_transitionPrototype.style = function(name, value, priority) {
+ var n = arguments.length;
+ if (n < 3) {
+ if (typeof name !== "string") {
+ if (n < 2) value = "";
+ for (priority in name) this.style(priority, name[priority], value);
+ return this;
+ }
+ priority = "";
+ }
+ function styleNull() {
+ this.style.removeProperty(name);
+ }
+ function styleString(b) {
+ return b == null ? styleNull : (b += "", function() {
+ var a = d3_window(this).getComputedStyle(this, null).getPropertyValue(name), i;
+ return a !== b && (i = d3_interpolate(a, b), function(t) {
+ this.style.setProperty(name, i(t), priority);
+ });
+ });
+ }
+ return d3_transition_tween(this, "style." + name, value, styleString);
+ };
+ d3_transitionPrototype.styleTween = function(name, tween, priority) {
+ if (arguments.length < 3) priority = "";
+ function styleTween(d, i) {
+ var f = tween.call(this, d, i, d3_window(this).getComputedStyle(this, null).getPropertyValue(name));
+ return f && function(t) {
+ this.style.setProperty(name, f(t), priority);
+ };
+ }
+ return this.tween("style." + name, styleTween);
+ };
+ d3_transitionPrototype.text = function(value) {
+ return d3_transition_tween(this, "text", value, d3_transition_text);
+ };
+ function d3_transition_text(b) {
+ if (b == null) b = "";
+ return function() {
+ this.textContent = b;
+ };
+ }
+ d3_transitionPrototype.remove = function() {
+ var ns = this.namespace;
+ return this.each("end.transition", function() {
+ var p;
+ if (this[ns].count < 2 && (p = this.parentNode)) p.removeChild(this);
+ });
+ };
+ d3_transitionPrototype.ease = function(value) {
+ var id = this.id, ns = this.namespace;
+ if (arguments.length < 1) return this.node()[ns][id].ease;
+ if (typeof value !== "function") value = d3.ease.apply(d3, arguments);
+ return d3_selection_each(this, function(node) {
+ node[ns][id].ease = value;
+ });
+ };
+ d3_transitionPrototype.delay = function(value) {
+ var id = this.id, ns = this.namespace;
+ if (arguments.length < 1) return this.node()[ns][id].delay;
+ return d3_selection_each(this, typeof value === "function" ? function(node, i, j) {
+ node[ns][id].delay = +value.call(node, node.__data__, i, j);
+ } : (value = +value, function(node) {
+ node[ns][id].delay = value;
+ }));
+ };
+ d3_transitionPrototype.duration = function(value) {
+ var id = this.id, ns = this.namespace;
+ if (arguments.length < 1) return this.node()[ns][id].duration;
+ return d3_selection_each(this, typeof value === "function" ? function(node, i, j) {
+ node[ns][id].duration = Math.max(1, value.call(node, node.__data__, i, j));
+ } : (value = Math.max(1, value), function(node) {
+ node[ns][id].duration = value;
+ }));
+ };
+ d3_transitionPrototype.each = function(type, listener) {
+ var id = this.id, ns = this.namespace;
+ if (arguments.length < 2) {
+ var inherit = d3_transitionInherit, inheritId = d3_transitionInheritId;
+ try {
+ d3_transitionInheritId = id;
+ d3_selection_each(this, function(node, i, j) {
+ d3_transitionInherit = node[ns][id];
+ type.call(node, node.__data__, i, j);
+ });
+ } finally {
+ d3_transitionInherit = inherit;
+ d3_transitionInheritId = inheritId;
+ }
+ } else {
+ d3_selection_each(this, function(node) {
+ var transition = node[ns][id];
+ (transition.event || (transition.event = d3.dispatch("start", "end", "interrupt"))).on(type, listener);
+ });
+ }
+ return this;
+ };
+ d3_transitionPrototype.transition = function() {
+ var id0 = this.id, id1 = ++d3_transitionId, ns = this.namespace, subgroups = [], subgroup, group, node, transition;
+ for (var j = 0, m = this.length; j < m; j++) {
+ subgroups.push(subgroup = []);
+ for (var group = this[j], i = 0, n = group.length; i < n; i++) {
+ if (node = group[i]) {
+ transition = node[ns][id0];
+ d3_transitionNode(node, i, ns, id1, {
+ time: transition.time,
+ ease: transition.ease,
+ delay: transition.delay + transition.duration,
+ duration: transition.duration
+ });
+ }
+ subgroup.push(node);
+ }
+ }
+ return d3_transition(subgroups, ns, id1);
+ };
+ function d3_transitionNamespace(name) {
+ return name == null ? "__transition__" : "__transition_" + name + "__";
+ }
+ function d3_transitionNode(node, i, ns, id, inherit) {
+ var lock = node[ns] || (node[ns] = {
+ active: 0,
+ count: 0
+ }), transition = lock[id];
+ if (!transition) {
+ var time = inherit.time;
+ transition = lock[id] = {
+ tween: new d3_Map(),
+ time: time,
+ delay: inherit.delay,
+ duration: inherit.duration,
+ ease: inherit.ease,
+ index: i
+ };
+ inherit = null;
+ ++lock.count;
+ d3.timer(function(elapsed) {
+ var delay = transition.delay, duration, ease, timer = d3_timer_active, tweened = [];
+ timer.t = delay + time;
+ if (delay <= elapsed) return start(elapsed - delay);
+ timer.c = start;
+ function start(elapsed) {
+ if (lock.active > id) return stop();
+ var active = lock[lock.active];
+ if (active) {
+ --lock.count;
+ delete lock[lock.active];
+ active.event && active.event.interrupt.call(node, node.__data__, active.index);
+ }
+ lock.active = id;
+ transition.event && transition.event.start.call(node, node.__data__, i);
+ transition.tween.forEach(function(key, value) {
+ if (value = value.call(node, node.__data__, i)) {
+ tweened.push(value);
+ }
+ });
+ ease = transition.ease;
+ duration = transition.duration;
+ d3.timer(function() {
+ timer.c = tick(elapsed || 1) ? d3_true : tick;
+ return 1;
+ }, 0, time);
+ }
+ function tick(elapsed) {
+ if (lock.active !== id) return 1;
+ var t = elapsed / duration, e = ease(t), n = tweened.length;
+ while (n > 0) {
+ tweened[--n].call(node, e);
+ }
+ if (t >= 1) {
+ transition.event && transition.event.end.call(node, node.__data__, i);
+ return stop();
+ }
+ }
+ function stop() {
+ if (--lock.count) delete lock[id]; else delete node[ns];
+ return 1;
+ }
+ }, 0, time);
+ }
+ }
+ d3.svg.axis = function() {
+ var scale = d3.scale.linear(), orient = d3_svg_axisDefaultOrient, innerTickSize = 6, outerTickSize = 6, tickPadding = 3, tickArguments_ = [ 10 ], tickValues = null, tickFormat_;
+ function axis(g) {
+ g.each(function() {
+ var g = d3.select(this);
+ var scale0 = this.__chart__ || scale, scale1 = this.__chart__ = scale.copy();
+ var ticks = tickValues == null ? scale1.ticks ? scale1.ticks.apply(scale1, tickArguments_) : scale1.domain() : tickValues, tickFormat = tickFormat_ == null ? scale1.tickFormat ? scale1.tickFormat.apply(scale1, tickArguments_) : d3_identity : tickFormat_, tick = g.selectAll(".tick").data(ticks, scale1), tickEnter = tick.enter().insert("g", ".domain").attr("class", "tick").style("opacity", ε), tickExit = d3.transition(tick.exit()).style("opacity", ε).remove(), tickUpdate = d3.transition(tick.order()).style("opacity", 1), tickSpacing = Math.max(innerTickSize, 0) + tickPadding, tickTransform;
+ var range = d3_scaleRange(scale1), path = g.selectAll(".domain").data([ 0 ]), pathUpdate = (path.enter().append("path").attr("class", "domain"),
+ d3.transition(path));
+ tickEnter.append("line");
+ tickEnter.append("text");
+ var lineEnter = tickEnter.select("line"), lineUpdate = tickUpdate.select("line"), text = tick.select("text").text(tickFormat), textEnter = tickEnter.select("text"), textUpdate = tickUpdate.select("text"), sign = orient === "top" || orient === "left" ? -1 : 1, x1, x2, y1, y2;
+ if (orient === "bottom" || orient === "top") {
+ tickTransform = d3_svg_axisX, x1 = "x", y1 = "y", x2 = "x2", y2 = "y2";
+ text.attr("dy", sign < 0 ? "0em" : ".71em").style("text-anchor", "middle");
+ pathUpdate.attr("d", "M" + range[0] + "," + sign * outerTickSize + "V0H" + range[1] + "V" + sign * outerTickSize);
+ } else {
+ tickTransform = d3_svg_axisY, x1 = "y", y1 = "x", x2 = "y2", y2 = "x2";
+ text.attr("dy", ".32em").style("text-anchor", sign < 0 ? "end" : "start");
+ pathUpdate.attr("d", "M" + sign * outerTickSize + "," + range[0] + "H0V" + range[1] + "H" + sign * outerTickSize);
+ }
+ lineEnter.attr(y2, sign * innerTickSize);
+ textEnter.attr(y1, sign * tickSpacing);
+ lineUpdate.attr(x2, 0).attr(y2, sign * innerTickSize);
+ textUpdate.attr(x1, 0).attr(y1, sign * tickSpacing);
+ if (scale1.rangeBand) {
+ var x = scale1, dx = x.rangeBand() / 2;
+ scale0 = scale1 = function(d) {
+ return x(d) + dx;
+ };
+ } else if (scale0.rangeBand) {
+ scale0 = scale1;
+ } else {
+ tickExit.call(tickTransform, scale1, scale0);
+ }
+ tickEnter.call(tickTransform, scale0, scale1);
+ tickUpdate.call(tickTransform, scale1, scale1);
+ });
+ }
+ axis.scale = function(x) {
+ if (!arguments.length) return scale;
+ scale = x;
+ return axis;
+ };
+ axis.orient = function(x) {
+ if (!arguments.length) return orient;
+ orient = x in d3_svg_axisOrients ? x + "" : d3_svg_axisDefaultOrient;
+ return axis;
+ };
+ axis.ticks = function() {
+ if (!arguments.length) return tickArguments_;
+ tickArguments_ = arguments;
+ return axis;
+ };
+ axis.tickValues = function(x) {
+ if (!arguments.length) return tickValues;
+ tickValues = x;
+ return axis;
+ };
+ axis.tickFormat = function(x) {
+ if (!arguments.length) return tickFormat_;
+ tickFormat_ = x;
+ return axis;
+ };
+ axis.tickSize = function(x) {
+ var n = arguments.length;
+ if (!n) return innerTickSize;
+ innerTickSize = +x;
+ outerTickSize = +arguments[n - 1];
+ return axis;
+ };
+ axis.innerTickSize = function(x) {
+ if (!arguments.length) return innerTickSize;
+ innerTickSize = +x;
+ return axis;
+ };
+ axis.outerTickSize = function(x) {
+ if (!arguments.length) return outerTickSize;
+ outerTickSize = +x;
+ return axis;
+ };
+ axis.tickPadding = function(x) {
+ if (!arguments.length) return tickPadding;
+ tickPadding = +x;
+ return axis;
+ };
+ axis.tickSubdivide = function() {
+ return arguments.length && axis;
+ };
+ return axis;
+ };
+ var d3_svg_axisDefaultOrient = "bottom", d3_svg_axisOrients = {
+ top: 1,
+ right: 1,
+ bottom: 1,
+ left: 1
+ };
+ function d3_svg_axisX(selection, x0, x1) {
+ selection.attr("transform", function(d) {
+ var v0 = x0(d);
+ return "translate(" + (isFinite(v0) ? v0 : x1(d)) + ",0)";
+ });
+ }
+ function d3_svg_axisY(selection, y0, y1) {
+ selection.attr("transform", function(d) {
+ var v0 = y0(d);
+ return "translate(0," + (isFinite(v0) ? v0 : y1(d)) + ")";
+ });
+ }
+ d3.svg.brush = function() {
+ var event = d3_eventDispatch(brush, "brushstart", "brush", "brushend"), x = null, y = null, xExtent = [ 0, 0 ], yExtent = [ 0, 0 ], xExtentDomain, yExtentDomain, xClamp = true, yClamp = true, resizes = d3_svg_brushResizes[0];
+ function brush(g) {
+ g.each(function() {
+ var g = d3.select(this).style("pointer-events", "all").style("-webkit-tap-highlight-color", "rgba(0,0,0,0)").on("mousedown.brush", brushstart).on("touchstart.brush", brushstart);
+ var background = g.selectAll(".background").data([ 0 ]);
+ background.enter().append("rect").attr("class", "background").style("visibility", "hidden").style("cursor", "crosshair");
+ g.selectAll(".extent").data([ 0 ]).enter().append("rect").attr("class", "extent").style("cursor", "move");
+ var resize = g.selectAll(".resize").data(resizes, d3_identity);
+ resize.exit().remove();
+ resize.enter().append("g").attr("class", function(d) {
+ return "resize " + d;
+ }).style("cursor", function(d) {
+ return d3_svg_brushCursor[d];
+ }).append("rect").attr("x", function(d) {
+ return /[ew]$/.test(d) ? -3 : null;
+ }).attr("y", function(d) {
+ return /^[ns]/.test(d) ? -3 : null;
+ }).attr("width", 6).attr("height", 6).style("visibility", "hidden");
+ resize.style("display", brush.empty() ? "none" : null);
+ var gUpdate = d3.transition(g), backgroundUpdate = d3.transition(background), range;
+ if (x) {
+ range = d3_scaleRange(x);
+ backgroundUpdate.attr("x", range[0]).attr("width", range[1] - range[0]);
+ redrawX(gUpdate);
+ }
+ if (y) {
+ range = d3_scaleRange(y);
+ backgroundUpdate.attr("y", range[0]).attr("height", range[1] - range[0]);
+ redrawY(gUpdate);
+ }
+ redraw(gUpdate);
+ });
+ }
+ brush.event = function(g) {
+ g.each(function() {
+ var event_ = event.of(this, arguments), extent1 = {
+ x: xExtent,
+ y: yExtent,
+ i: xExtentDomain,
+ j: yExtentDomain
+ }, extent0 = this.__chart__ || extent1;
+ this.__chart__ = extent1;
+ if (d3_transitionInheritId) {
+ d3.select(this).transition().each("start.brush", function() {
+ xExtentDomain = extent0.i;
+ yExtentDomain = extent0.j;
+ xExtent = extent0.x;
+ yExtent = extent0.y;
+ event_({
+ type: "brushstart"
+ });
+ }).tween("brush:brush", function() {
+ var xi = d3_interpolateArray(xExtent, extent1.x), yi = d3_interpolateArray(yExtent, extent1.y);
+ xExtentDomain = yExtentDomain = null;
+ return function(t) {
+ xExtent = extent1.x = xi(t);
+ yExtent = extent1.y = yi(t);
+ event_({
+ type: "brush",
+ mode: "resize"
+ });
+ };
+ }).each("end.brush", function() {
+ xExtentDomain = extent1.i;
+ yExtentDomain = extent1.j;
+ event_({
+ type: "brush",
+ mode: "resize"
+ });
+ event_({
+ type: "brushend"
+ });
+ });
+ } else {
+ event_({
+ type: "brushstart"
+ });
+ event_({
+ type: "brush",
+ mode: "resize"
+ });
+ event_({
+ type: "brushend"
+ });
+ }
+ });
+ };
+ function redraw(g) {
+ g.selectAll(".resize").attr("transform", function(d) {
+ return "translate(" + xExtent[+/e$/.test(d)] + "," + yExtent[+/^s/.test(d)] + ")";
+ });
+ }
+ function redrawX(g) {
+ g.select(".extent").attr("x", xExtent[0]);
+ g.selectAll(".extent,.n>rect,.s>rect").attr("width", xExtent[1] - xExtent[0]);
+ }
+ function redrawY(g) {
+ g.select(".extent").attr("y", yExtent[0]);
+ g.selectAll(".extent,.e>rect,.w>rect").attr("height", yExtent[1] - yExtent[0]);
+ }
+ function brushstart() {
+ var target = this, eventTarget = d3.select(d3.event.target), event_ = event.of(target, arguments), g = d3.select(target), resizing = eventTarget.datum(), resizingX = !/^(n|s)$/.test(resizing) && x, resizingY = !/^(e|w)$/.test(resizing) && y, dragging = eventTarget.classed("extent"), dragRestore = d3_event_dragSuppress(target), center, origin = d3.mouse(target), offset;
+ var w = d3.select(d3_window(target)).on("keydown.brush", keydown).on("keyup.brush", keyup);
+ if (d3.event.changedTouches) {
+ w.on("touchmove.brush", brushmove).on("touchend.brush", brushend);
+ } else {
+ w.on("mousemove.brush", brushmove).on("mouseup.brush", brushend);
+ }
+ g.interrupt().selectAll("*").interrupt();
+ if (dragging) {
+ origin[0] = xExtent[0] - origin[0];
+ origin[1] = yExtent[0] - origin[1];
+ } else if (resizing) {
+ var ex = +/w$/.test(resizing), ey = +/^n/.test(resizing);
+ offset = [ xExtent[1 - ex] - origin[0], yExtent[1 - ey] - origin[1] ];
+ origin[0] = xExtent[ex];
+ origin[1] = yExtent[ey];
+ } else if (d3.event.altKey) center = origin.slice();
+ g.style("pointer-events", "none").selectAll(".resize").style("display", null);
+ d3.select("body").style("cursor", eventTarget.style("cursor"));
+ event_({
+ type: "brushstart"
+ });
+ brushmove();
+ function keydown() {
+ if (d3.event.keyCode == 32) {
+ if (!dragging) {
+ center = null;
+ origin[0] -= xExtent[1];
+ origin[1] -= yExtent[1];
+ dragging = 2;
+ }
+ d3_eventPreventDefault();
+ }
+ }
+ function keyup() {
+ if (d3.event.keyCode == 32 && dragging == 2) {
+ origin[0] += xExtent[1];
+ origin[1] += yExtent[1];
+ dragging = 0;
+ d3_eventPreventDefault();
+ }
+ }
+ function brushmove() {
+ var point = d3.mouse(target), moved = false;
+ if (offset) {
+ point[0] += offset[0];
+ point[1] += offset[1];
+ }
+ if (!dragging) {
+ if (d3.event.altKey) {
+ if (!center) center = [ (xExtent[0] + xExtent[1]) / 2, (yExtent[0] + yExtent[1]) / 2 ];
+ origin[0] = xExtent[+(point[0] < center[0])];
+ origin[1] = yExtent[+(point[1] < center[1])];
+ } else center = null;
+ }
+ if (resizingX && move1(point, x, 0)) {
+ redrawX(g);
+ moved = true;
+ }
+ if (resizingY && move1(point, y, 1)) {
+ redrawY(g);
+ moved = true;
+ }
+ if (moved) {
+ redraw(g);
+ event_({
+ type: "brush",
+ mode: dragging ? "move" : "resize"
+ });
+ }
+ }
+ function move1(point, scale, i) {
+ var range = d3_scaleRange(scale), r0 = range[0], r1 = range[1], position = origin[i], extent = i ? yExtent : xExtent, size = extent[1] - extent[0], min, max;
+ if (dragging) {
+ r0 -= position;
+ r1 -= size + position;
+ }
+ min = (i ? yClamp : xClamp) ? Math.max(r0, Math.min(r1, point[i])) : point[i];
+ if (dragging) {
+ max = (min += position) + size;
+ } else {
+ if (center) position = Math.max(r0, Math.min(r1, 2 * center[i] - min));
+ if (position < min) {
+ max = min;
+ min = position;
+ } else {
+ max = position;
+ }
+ }
+ if (extent[0] != min || extent[1] != max) {
+ if (i) yExtentDomain = null; else xExtentDomain = null;
+ extent[0] = min;
+ extent[1] = max;
+ return true;
+ }
+ }
+ function brushend() {
+ brushmove();
+ g.style("pointer-events", "all").selectAll(".resize").style("display", brush.empty() ? "none" : null);
+ d3.select("body").style("cursor", null);
+ w.on("mousemove.brush", null).on("mouseup.brush", null).on("touchmove.brush", null).on("touchend.brush", null).on("keydown.brush", null).on("keyup.brush", null);
+ dragRestore();
+ event_({
+ type: "brushend"
+ });
+ }
+ }
+ brush.x = function(z) {
+ if (!arguments.length) return x;
+ x = z;
+ resizes = d3_svg_brushResizes[!x << 1 | !y];
+ return brush;
+ };
+ brush.y = function(z) {
+ if (!arguments.length) return y;
+ y = z;
+ resizes = d3_svg_brushResizes[!x << 1 | !y];
+ return brush;
+ };
+ brush.clamp = function(z) {
+ if (!arguments.length) return x && y ? [ xClamp, yClamp ] : x ? xClamp : y ? yClamp : null;
+ if (x && y) xClamp = !!z[0], yClamp = !!z[1]; else if (x) xClamp = !!z; else if (y) yClamp = !!z;
+ return brush;
+ };
+ brush.extent = function(z) {
+ var x0, x1, y0, y1, t;
+ if (!arguments.length) {
+ if (x) {
+ if (xExtentDomain) {
+ x0 = xExtentDomain[0], x1 = xExtentDomain[1];
+ } else {
+ x0 = xExtent[0], x1 = xExtent[1];
+ if (x.invert) x0 = x.invert(x0), x1 = x.invert(x1);
+ if (x1 < x0) t = x0, x0 = x1, x1 = t;
+ }
+ }
+ if (y) {
+ if (yExtentDomain) {
+ y0 = yExtentDomain[0], y1 = yExtentDomain[1];
+ } else {
+ y0 = yExtent[0], y1 = yExtent[1];
+ if (y.invert) y0 = y.invert(y0), y1 = y.invert(y1);
+ if (y1 < y0) t = y0, y0 = y1, y1 = t;
+ }
+ }
+ return x && y ? [ [ x0, y0 ], [ x1, y1 ] ] : x ? [ x0, x1 ] : y && [ y0, y1 ];
+ }
+ if (x) {
+ x0 = z[0], x1 = z[1];
+ if (y) x0 = x0[0], x1 = x1[0];
+ xExtentDomain = [ x0, x1 ];
+ if (x.invert) x0 = x(x0), x1 = x(x1);
+ if (x1 < x0) t = x0, x0 = x1, x1 = t;
+ if (x0 != xExtent[0] || x1 != xExtent[1]) xExtent = [ x0, x1 ];
+ }
+ if (y) {
+ y0 = z[0], y1 = z[1];
+ if (x) y0 = y0[1], y1 = y1[1];
+ yExtentDomain = [ y0, y1 ];
+ if (y.invert) y0 = y(y0), y1 = y(y1);
+ if (y1 < y0) t = y0, y0 = y1, y1 = t;
+ if (y0 != yExtent[0] || y1 != yExtent[1]) yExtent = [ y0, y1 ];
+ }
+ return brush;
+ };
+ brush.clear = function() {
+ if (!brush.empty()) {
+ xExtent = [ 0, 0 ], yExtent = [ 0, 0 ];
+ xExtentDomain = yExtentDomain = null;
+ }
+ return brush;
+ };
+ brush.empty = function() {
+ return !!x && xExtent[0] == xExtent[1] || !!y && yExtent[0] == yExtent[1];
+ };
+ return d3.rebind(brush, event, "on");
+ };
+ var d3_svg_brushCursor = {
+ n: "ns-resize",
+ e: "ew-resize",
+ s: "ns-resize",
+ w: "ew-resize",
+ nw: "nwse-resize",
+ ne: "nesw-resize",
+ se: "nwse-resize",
+ sw: "nesw-resize"
+ };
+ var d3_svg_brushResizes = [ [ "n", "e", "s", "w", "nw", "ne", "se", "sw" ], [ "e", "w" ], [ "n", "s" ], [] ];
+ var d3_time_format = d3_time.format = d3_locale_enUS.timeFormat;
+ var d3_time_formatUtc = d3_time_format.utc;
+ var d3_time_formatIso = d3_time_formatUtc("%Y-%m-%dT%H:%M:%S.%LZ");
+ d3_time_format.iso = Date.prototype.toISOString && +new Date("2000-01-01T00:00:00.000Z") ? d3_time_formatIsoNative : d3_time_formatIso;
+ function d3_time_formatIsoNative(date) {
+ return date.toISOString();
+ }
+ d3_time_formatIsoNative.parse = function(string) {
+ var date = new Date(string);
+ return isNaN(date) ? null : date;
+ };
+ d3_time_formatIsoNative.toString = d3_time_formatIso.toString;
+ d3_time.second = d3_time_interval(function(date) {
+ return new d3_date(Math.floor(date / 1e3) * 1e3);
+ }, function(date, offset) {
+ date.setTime(date.getTime() + Math.floor(offset) * 1e3);
+ }, function(date) {
+ return date.getSeconds();
+ });
+ d3_time.seconds = d3_time.second.range;
+ d3_time.seconds.utc = d3_time.second.utc.range;
+ d3_time.minute = d3_time_interval(function(date) {
+ return new d3_date(Math.floor(date / 6e4) * 6e4);
+ }, function(date, offset) {
+ date.setTime(date.getTime() + Math.floor(offset) * 6e4);
+ }, function(date) {
+ return date.getMinutes();
+ });
+ d3_time.minutes = d3_time.minute.range;
+ d3_time.minutes.utc = d3_time.minute.utc.range;
+ d3_time.hour = d3_time_interval(function(date) {
+ var timezone = date.getTimezoneOffset() / 60;
+ return new d3_date((Math.floor(date / 36e5 - timezone) + timezone) * 36e5);
+ }, function(date, offset) {
+ date.setTime(date.getTime() + Math.floor(offset) * 36e5);
+ }, function(date) {
+ return date.getHours();
+ });
+ d3_time.hours = d3_time.hour.range;
+ d3_time.hours.utc = d3_time.hour.utc.range;
+ d3_time.month = d3_time_interval(function(date) {
+ date = d3_time.day(date);
+ date.setDate(1);
+ return date;
+ }, function(date, offset) {
+ date.setMonth(date.getMonth() + offset);
+ }, function(date) {
+ return date.getMonth();
+ });
+ d3_time.months = d3_time.month.range;
+ d3_time.months.utc = d3_time.month.utc.range;
+ function d3_time_scale(linear, methods, format) {
+ function scale(x) {
+ return linear(x);
+ }
+ scale.invert = function(x) {
+ return d3_time_scaleDate(linear.invert(x));
+ };
+ scale.domain = function(x) {
+ if (!arguments.length) return linear.domain().map(d3_time_scaleDate);
+ linear.domain(x);
+ return scale;
+ };
+ function tickMethod(extent, count) {
+ var span = extent[1] - extent[0], target = span / count, i = d3.bisect(d3_time_scaleSteps, target);
+ return i == d3_time_scaleSteps.length ? [ methods.year, d3_scale_linearTickRange(extent.map(function(d) {
+ return d / 31536e6;
+ }), count)[2] ] : !i ? [ d3_time_scaleMilliseconds, d3_scale_linearTickRange(extent, count)[2] ] : methods[target / d3_time_scaleSteps[i - 1] < d3_time_scaleSteps[i] / target ? i - 1 : i];
+ }
+ scale.nice = function(interval, skip) {
+ var domain = scale.domain(), extent = d3_scaleExtent(domain), method = interval == null ? tickMethod(extent, 10) : typeof interval === "number" && tickMethod(extent, interval);
+ if (method) interval = method[0], skip = method[1];
+ function skipped(date) {
+ return !isNaN(date) && !interval.range(date, d3_time_scaleDate(+date + 1), skip).length;
+ }
+ return scale.domain(d3_scale_nice(domain, skip > 1 ? {
+ floor: function(date) {
+ while (skipped(date = interval.floor(date))) date = d3_time_scaleDate(date - 1);
+ return date;
+ },
+ ceil: function(date) {
+ while (skipped(date = interval.ceil(date))) date = d3_time_scaleDate(+date + 1);
+ return date;
+ }
+ } : interval));
+ };
+ scale.ticks = function(interval, skip) {
+ var extent = d3_scaleExtent(scale.domain()), method = interval == null ? tickMethod(extent, 10) : typeof interval === "number" ? tickMethod(extent, interval) : !interval.range && [ {
+ range: interval
+ }, skip ];
+ if (method) interval = method[0], skip = method[1];
+ return interval.range(extent[0], d3_time_scaleDate(+extent[1] + 1), skip < 1 ? 1 : skip);
+ };
+ scale.tickFormat = function() {
+ return format;
+ };
+ scale.copy = function() {
+ return d3_time_scale(linear.copy(), methods, format);
+ };
+ return d3_scale_linearRebind(scale, linear);
+ }
+ function d3_time_scaleDate(t) {
+ return new Date(t);
+ }
+ var d3_time_scaleSteps = [ 1e3, 5e3, 15e3, 3e4, 6e4, 3e5, 9e5, 18e5, 36e5, 108e5, 216e5, 432e5, 864e5, 1728e5, 6048e5, 2592e6, 7776e6, 31536e6 ];
+ var d3_time_scaleLocalMethods = [ [ d3_time.second, 1 ], [ d3_time.second, 5 ], [ d3_time.second, 15 ], [ d3_time.second, 30 ], [ d3_time.minute, 1 ], [ d3_time.minute, 5 ], [ d3_time.minute, 15 ], [ d3_time.minute, 30 ], [ d3_time.hour, 1 ], [ d3_time.hour, 3 ], [ d3_time.hour, 6 ], [ d3_time.hour, 12 ], [ d3_time.day, 1 ], [ d3_time.day, 2 ], [ d3_time.week, 1 ], [ d3_time.month, 1 ], [ d3_time.month, 3 ], [ d3_time.year, 1 ] ];
+ var d3_time_scaleLocalFormat = d3_time_format.multi([ [ ".%L", function(d) {
+ return d.getMilliseconds();
+ } ], [ ":%S", function(d) {
+ return d.getSeconds();
+ } ], [ "%I:%M", function(d) {
+ return d.getMinutes();
+ } ], [ "%I %p", function(d) {
+ return d.getHours();
+ } ], [ "%a %d", function(d) {
+ return d.getDay() && d.getDate() != 1;
+ } ], [ "%b %d", function(d) {
+ return d.getDate() != 1;
+ } ], [ "%B", function(d) {
+ return d.getMonth();
+ } ], [ "%Y", d3_true ] ]);
+ var d3_time_scaleMilliseconds = {
+ range: function(start, stop, step) {
+ return d3.range(Math.ceil(start / step) * step, +stop, step).map(d3_time_scaleDate);
+ },
+ floor: d3_identity,
+ ceil: d3_identity
+ };
+ d3_time_scaleLocalMethods.year = d3_time.year;
+ d3_time.scale = function() {
+ return d3_time_scale(d3.scale.linear(), d3_time_scaleLocalMethods, d3_time_scaleLocalFormat);
+ };
+ var d3_time_scaleUtcMethods = d3_time_scaleLocalMethods.map(function(m) {
+ return [ m[0].utc, m[1] ];
+ });
+ var d3_time_scaleUtcFormat = d3_time_formatUtc.multi([ [ ".%L", function(d) {
+ return d.getUTCMilliseconds();
+ } ], [ ":%S", function(d) {
+ return d.getUTCSeconds();
+ } ], [ "%I:%M", function(d) {
+ return d.getUTCMinutes();
+ } ], [ "%I %p", function(d) {
+ return d.getUTCHours();
+ } ], [ "%a %d", function(d) {
+ return d.getUTCDay() && d.getUTCDate() != 1;
+ } ], [ "%b %d", function(d) {
+ return d.getUTCDate() != 1;
+ } ], [ "%B", function(d) {
+ return d.getUTCMonth();
+ } ], [ "%Y", d3_true ] ]);
+ d3_time_scaleUtcMethods.year = d3_time.year.utc;
+ d3_time.scale.utc = function() {
+ return d3_time_scale(d3.scale.linear(), d3_time_scaleUtcMethods, d3_time_scaleUtcFormat);
+ };
+ d3.text = d3_xhrType(function(request) {
+ return request.responseText;
+ });
+ d3.json = function(url, callback) {
+ return d3_xhr(url, "application/json", d3_json, callback);
+ };
+ function d3_json(request) {
+ return JSON.parse(request.responseText);
+ }
+ d3.html = function(url, callback) {
+ return d3_xhr(url, "text/html", d3_html, callback);
+ };
+ function d3_html(request) {
+ var range = d3_document.createRange();
+ range.selectNode(d3_document.body);
+ return range.createContextualFragment(request.responseText);
+ }
+ d3.xml = d3_xhrType(function(request) {
+ return request.responseXML;
+ });
+ if (typeof define === "function" && define.amd) define(d3); else if (typeof module === "object" && module.exports) module.exports = d3;
+ this.d3 = d3;
+}();
\ No newline at end of file
diff --git a/ols-ui/ontologyWidget/relationalTree/script/jquery.min.1.11.2.js b/ols-ui/ontologyWidget/relationalTree/script/jquery.min.1.11.2.js
new file mode 100644
index 00000000..e6a051d0
--- /dev/null
+++ b/ols-ui/ontologyWidget/relationalTree/script/jquery.min.1.11.2.js
@@ -0,0 +1,4 @@
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0})}),m.each({Height:"height",Width:"width"},function(a,b){m.each({padding:"inner"+a,content:b,"":"outer"+a},function(c,d){m.fn[d]=function(d,e){var f=arguments.length&&(c||"boolean"!=typeof d),g=c||(d===!0||e===!0?"margin":"border");return V(this,function(b,c,d){var e;return m.isWindow(b)?b.document.documentElement["client"+a]:9===b.nodeType?(e=b.documentElement,Math.max(b.body["scroll"+a],e["scroll"+a],b.body["offset"+a],e["offset"+a],e["client"+a])):void 0===d?m.css(b,c,g):m.style(b,c,d,g)},b,f?d:void 0,f,null)}})}),m.fn.size=function(){return this.length},m.fn.andSelf=m.fn.addBack,"function"==typeof define&&define.amd&&define("jquery",[],function(){return m});var ed=a.jQuery,fd=a.$;return m.noConflict=function(b){return a.$===m&&(a.$=fd),b&&a.jQuery===m&&(a.jQuery=ed),m},typeof b===K&&(a.jQuery=a.$=m),m});
diff --git a/ols-ui/ontologyWidget/relationalTree/script/relationalTree.js b/ols-ui/ontologyWidget/relationalTree/script/relationalTree.js
new file mode 100644
index 00000000..975915f2
--- /dev/null
+++ b/ols-ui/ontologyWidget/relationalTree/script/relationalTree.js
@@ -0,0 +1,385 @@
+jQuery(document).ready(function () {
+ jQuery.noConflict();
+ jQuery('.term-relational-tree').injectRelationalTree();
+
+
+});
+
+var element_to_inject;
+var json_path;
+var label;
+var ontology_name;
+
+//make it a jquery plugin that can be attached to any element.
+(function ($) {
+
+
+ //function getDataAndInject(){
+ $.fn.injectRelationalTree = function () {
+
+ element_to_inject = this;
+
+ //Get the <term-relational-tree> tag label attribute
+ //var label = $(".term-relational-tree").attr("data-label");
+ var label = this.attr("data-label");
+ //Get the <term-relational-tree> tag ontology-name attribute
+ //var ontology_name= $(".term-relational-tree").attr("data-ontology-name");
+ ontology_name = this.attr("data-ontology-name");
+
+ //Get the <term-relational-tree> tag json-path attribute
+ // The json_path the url pointing to the solr server, or the server which given a label parameter returns the expected json.
+ // The label part of the url should contain the following string "LABEL_TO_REPLACE" so that the widget can easily replace
+ // this with the given label.
+
+ // If the json_path was not given use the ebi default url.
+ //var json_path = $(".term-relational-tree").attr("data-json-path")
+ json_path = this.attr("data-json-path");
+ if (typeof json_path == 'undefined' || json_path.indexOf("LABEL_TO_REPLACE") == -1) {
+ json_path = "http://localhost:8983/solr/ontology/select?q=label%3ALABEL_TO_REPLACE&rows=1&wt=json&indent=true";
+ }
+ //If the json_path does not contain a LABEL_TO_REPLACE string then send an error message.
+ else if (json_path.indexOf("LABEL_TO_REPLACE") == -1) {
+ html_to_inject = '<div class="msgError">BAD USE OF THE <term-relational-tree> tag, you should provide a json_path parameter which is a url' +
+ 'pointing to your solr server with a LABEL_TO_REPLACE string where the widget need to replace with the given label<br>' +
+ 'ex : <term-relational-tree label="lung" ontology-name="EFO" json-path="http://localhost:8983/solr/ontology/select?q=label%3ALABEL_TO_REPLACE+AND+ontology_name%3AONTOLOGY_NAME_TO_REPLACE&rows=1&wt=json&indent=true"></term-relational-tree></div>';
+
+ //$('.term-relational-tree').append(html_to_inject);
+ this.append(html_to_inject);
+ }
+ //If the json_path does not contain a LABEL_TO_REPLACE string then send an error message.
+ else if (json_path.indexOf("ONTOLOGY_NAME_TO_REPLACE") == -1) {
+ html_to_inject = '<div class="msgError">BAD USE OF THE <term-relational-tree> tag, you should provide a json_path parameter which is a url' +
+ 'pointing to your solr server with a ONTOLOGY_NAME_TO_REPLACE string where the widget need to replace with the given ontology-name<br>' +
+ 'ex : <term-relational-tree label="lung" ontology-name="EFO" json-path="http://localhost:8983/solr/ontology/select?q=label%3ALABEL_TO_REPLACE+AND+ontology_name%3AONTOLOGY_NAME_TO_REPLACE&rows=1&wt=json&indent=true"></term-relational-tree></div>';
+
+ //$('.term-relational-tree').append(html_to_inject);
+ this.append(html_to_inject);
+ }
+ //If the user didn't provide the label parameter then send an error message.
+ else if (typeof label == 'undefined') {
+ html_to_inject = '<div class="msgError">BAD USE OF THE <term-relational-tree> tag, you should at least provide a label parameter<br>' +
+ 'ex : <term-relational-tree label="lung"></term-relational-tree></div>';
+ //$('.term-relational-tree').append(html_to_inject);
+ this.append(html_to_inject);
+ }
+ else if (typeof ontology_name == 'undefined') {
+ html_to_inject = '<div class="msgError">BAD USE OF THE <term-relational-tree> tag, you should at least provide an ontology-name parameter<br>' +
+ 'ex : <term-relational-tree label="lung" ontology-name="EFO"></term-relational-tree></div>';
+ //$('.term-relational-tree').append(html_to_inject);
+ this.append(html_to_inject);
+ }
+
+
+ //Finally if the user has provided everything then parse the json, build the term overview and inject it in the <term-relational-tree> tag.
+ else {
+
+ var full_path = json_path.replace("LABEL_TO_REPLACE", label);
+ full_path = full_path.replace("ONTOLOGY_NAME_TO_REPLACE", ontology_name);
+ //because the url contains the string json.wrf=on_data, then javascript knows that when
+ // $.getJSON(full_path);
+ // is called it should build the json object from the given full_path parameter and send it to the on_data function.
+ full_path = full_path + "&wt=json&json.wrf=on_data&callback=?"
+
+ $.getJSON(full_path);//,function(json){
+ }
+ }
+
+}(jQuery));
+
+
+
+
+
+function getLabel (data){
+
+ label = data.response.docs[0].label;
+ short_form = data.response.docs[0].short_form;
+
+ //label = 'fish';
+ console.log("getLabel callback function THE LABEL = " + label);
+
+ var x = document.getElementsByTagName("text");
+ var i;
+ for (i = 0; i < x.length; i++) {
+ var text = x[i].innerHTML;
+ var lastIndexOf = text.lastIndexOf('/');
+ lastIndexOf++;
+ var short_form_from_URI = text.substr(lastIndexOf);
+ short_form_from_URI = short_form_from_URI.replace('snap#','');
+
+ if(short_form.indexOf(short_form_from_URI) != -1){
+ x[i].innerHTML=label;
+ }
+ console.log("text = " + text);
+ }
+
+
+
+
+}
+
+
+function on_data(json) {
+
+ var bbop_sibling_graph_json_string = json.response.docs[0].bbop_sibling_graph_json;
+
+ var bbop_sibling_graph_json = JSON.parse(bbop_sibling_graph_json_string);
+
+ var requestedTermLabel = json.response.docs[0].label;
+
+ var treeData = new Object();
+
+
+
+ var array_of_parents = [];
+ var all_children;
+ var all_parent = [];
+
+ var iri2label = [];
+ for (var i = 0; i<bbop_sibling_graph_json.nodes.length; i++){
+ var iri =bbop_sibling_graph_json.nodes[i].IRI;
+ var label = bbop_sibling_graph_json.nodes[i].LABEL;
+ console.log(iri + " = " + label + "\n");
+ iri2label[iri2label.length] = iri + "\t" + label;
+ }
+
+ console.log("iri2label.length = " + iri2label.length + "\n");
+
+ for (var i = 0; i < bbop_sibling_graph_json.edges.length; i++) {
+
+
+ var obj = bbop_sibling_graph_json.edges[i].obj;
+ var sub = bbop_sibling_graph_json.edges[i].sub;
+
+ all_children = all_children + "\t" + obj;
+ all_parent[all_parent.length] = sub;
+
+
+ var children_array = treeData[sub];
+ if (typeof children_array == 'undefined') {
+ //console.log("children_array is undefined\n");
+ children_array = [];
+ }else{
+ //console.log("children_array is NOT undefined\n");
+
+ }
+ children_array[children_array.length] = obj;
+ treeData[sub] = children_array;
+ //console.log("adding for parent " + sub + " array of children with " + children_array.length + " children including " + obj+ "\n");
+
+ //console.log("obj = " + obj + "\n");
+ //console.log("sub = " + sub + "\n\n");
+
+
+ }
+
+ //Search for the tree root
+ var root;
+ for (var i = 0; i < all_parent.length; i++) {
+ var parent = all_parent[i];
+ if (all_children.indexOf(parent) == -1) {
+ root = parent;
+ }
+
+ }
+
+
+ //var treeData =
+ //{
+ // "name": "lung",
+ // "children": [
+ // {
+ // "name": "has_parts",
+ // "children":[
+ // {"name": "respiratory system"}
+ // ]
+ // },
+ // {
+ // "name": "develops_from",
+ // "children": [
+ // {"name": "digetive_system"},
+ // {"name":"endoderm"},
+ // {"name" : "primordium"},
+ // ]
+ // }
+ // ]
+ //};
+ //
+
+
+
+ var d3Node = {"name": root} ;
+ d3Node = readTreeData(treeData, root, 0, iri2label, requestedTermLabel);
+
+
+ // Create a svg canvas
+ var vis = d3.select("#myid").append("svg:svg")
+ .attr("width", 2500)
+ .attr("height", 1500)
+ .append("svg:g")
+ .attr("transform", "translate(400, 0)"); // shift everything to the right
+
+ // Create a tree "canvas"
+ var tree = d3.layout.tree()
+ .size([1500,1200]);
+ //tree.nodeSize(100);
+ var diagonal = d3.svg.diagonal()
+ // change x and y (for the left to right tree)
+ .projection(function(d) { return [d.y, d.x]; });
+
+
+
+ // Preparing the data for the tree layout, convert data into an array of nodes
+ var nodes = tree.nodes(d3Node);
+ // Create an array with all the links
+ var links = tree.links(nodes);
+
+ var link = vis.selectAll("pathlink")
+ .data(links)
+ .enter().append("svg:path")
+ .attr("class", "link")
+ .attr("d", diagonal)
+ .attr("stroke:gray;stroke-width:1;")
+
+ var node = vis.selectAll("g.node")
+ .data(nodes)
+ .enter().append("svg:g")
+ .attr("stroke", "#4D4D4D")
+ .attr("transform", function(d) { return "translate(" + d.y + "," + d.x + ")"; })
+
+ //x = d.x;
+ //y = d.y;
+ //console.log("x = " + x);
+
+ // Add the dot at every node
+ node.append("svg:rect")
+ .attr("width", function(d) { name = d.name; length = name.length*6 + name.length*6*0.15; return length})
+ .attr("height",40)
+ .attr("style", function(d) { if(d.type == 'red') {return "fill:#FFEFD8;fill-opacity:1;stroke-width:1;stroke:#FFC36E"} else {return "fill:#DBEEFF;fill-opacity:1;stroke-width:1;stroke:#77BEFE"}})
+// .attr("x",x)
+// .attr("y",y)
+ .attr("align-content","center")
+ .attr("transform", function(d){
+ name = d.name;
+ length = name.length*6+name.length*6*0.1;
+ if(!d.children){
+ string = "translate(0,-20)";
+ return string;
+ }
+ string = "translate(0,-20)";
+ return string
+ })
+ .attr("rx","10")
+ .attr("rx","10");
+
+ // place the name atribute left or right depending if children
+ node.append("svg:text")
+ .attr("dx", function(d) {return 0;})
+//return d.children ? -8 : 8; })
+ .attr("dy", 3)
+ // .attr("text-anchor", function(d) { return d.children ? "end" : "start"; })
+ .text(function(d) { return d.name; }).attr("style","font-family:sans-serif;font-weight: 200;font-size:13px")
+
+
+
+
+
+
+
+ console.log("\n\n\n\n\n\n\n");
+
+
+ //console.log("bbop_sibling_graph_json_string = " + bbop_sibling_graph_json_string);
+}
+
+function readTreeData(treeData, root, tabCount, iri2label, requestedTermLabel){
+
+ var solr_path = json_path;
+
+ var label;
+ for(var k=0;k<iri2label.length; k++){
+ var value = iri2label[k];
+ console.log("value = " + value + "/n");
+ if(value.indexOf(root) != -1){
+ var splitValue = value.split("\t");
+ label = splitValue[1];
+ }
+ }
+
+ //
+ //var lastIndexOf = root.lastIndexOf('/');
+ //lastIndexOf++;
+ //var shortform = root.substr(lastIndexOf);
+ //shortform = shortform.replace('snap#','');
+ //
+ //
+ //solr_path = solr_path.replace("LABEL_TO_REPLACE", shortform);
+ //solr_path = solr_path.replace("ONTOLOGY_NAME_TO_REPLACE", ontology_name);
+ //solr_path = solr_path.replace("label" , 'short_form');
+ //solr_path = solr_path + "&wt=json&json.wrf=getLabel&callback=?";
+ //
+ //
+ //jQuery.getJSON(solr_path);//,function(json){
+
+
+ //var script = document.createElement('script');
+ //script.src = solr_path;
+ //document.getElementsByTagName('head')[0].appendChild(script);
+ ////window.setTimeout(wait(), 1000);
+
+ console.log("first call back, label = " + label + "\n");
+
+
+ //solr_path = solr_path + "&wt=json&json.wrf=get_label&callback=?"
+ //console.log("solr_path = " + solr_path);
+ var color = 'black';
+ if(requestedTermLabel == label){
+ color = 'red';
+ }
+
+ var d3Node = {"name":label, "type" : color};
+
+
+
+ var tabs = "\t";
+ for(i = 0; i<tabCount;i++){
+ tabs = tabs + "\t";
+ }
+ tabCount++;
+
+
+ //console.log("looking for " + root + " in treeData\n");
+ var rootChildren = treeData[root];
+ if(typeof rootChildren !== 'undefined' ) {
+
+ if(rootChildren.length !== 0) {
+ var childrenArray = [];
+
+ for (var i = 0; i < rootChildren.length; i++) {
+
+
+ var children = d3Node['children'];
+ if(typeof children == 'undefined'){
+ children = [];
+ }
+
+ //console.log(tabs + rootChildren[i] + "\n");
+ var child = readTreeData(treeData, rootChildren[i], tabCount,iri2label,requestedTermLabel);
+
+ children[children.length]=child;
+ d3Node['children']=children;
+
+
+ }
+
+ }
+ }
+
+ return d3Node;
+
+
+}
+
+
+
+
diff --git a/ols-ui/ontologyWidget/relationalTree/script/relationalTreeColapsible.js b/ols-ui/ontologyWidget/relationalTree/script/relationalTreeColapsible.js
new file mode 100644
index 00000000..23ce1b0e
--- /dev/null
+++ b/ols-ui/ontologyWidget/relationalTree/script/relationalTreeColapsible.js
@@ -0,0 +1,384 @@
+// Uses javascript from there : http://code.stephenmorley.org/javascript/collapsible-lists/#usage but modified.
+
+jQuery(document).ready(function () {
+ jQuery.noConflict();
+ jQuery('.term-relational-tree').injectRelationalTree();
+
+
+});
+
+var element_to_inject;
+var json_path;
+var label;
+var ontology_name;
+
+//make it a jquery plugin that can be attached to any element.
+(function ($) {
+
+
+ //function getDataAndInject(){
+ $.fn.injectRelationalTree = function () {
+
+ element_to_inject = this;
+
+ //Get the <term-relational-tree> tag label attribute
+ //var label = $(".term-relational-tree").attr("data-label");
+ var label = this.attr("data-label");
+ //Get the <term-relational-tree> tag ontology-name attribute
+ //var ontology_name= $(".term-relational-tree").attr("data-ontology-name");
+ ontology_name = this.attr("data-ontology-name");
+
+ //Get the <term-relational-tree> tag json-path attribute
+ // The json_path the url pointing to the solr server, or the server which given a label parameter returns the expected json.
+ // The label part of the url should contain the following string "LABEL_TO_REPLACE" so that the widget can easily replace
+ // this with the given label.
+
+ // If the json_path was not given use the ebi default url.
+ //var json_path = $(".term-relational-tree").attr("data-json-path")
+ json_path = this.attr("data-json-path");
+ if (typeof json_path == 'undefined' || json_path.indexOf("LABEL_TO_REPLACE") == -1) {
+ json_path = "http://localhost:8983/solr/ontology/select?q=label%3ALABEL_TO_REPLACE&rows=1&wt=json&indent=true";
+ }
+ //If the json_path does not contain a LABEL_TO_REPLACE string then send an error message.
+ else if (json_path.indexOf("LABEL_TO_REPLACE") == -1) {
+ html_to_inject = '<div class="msgError">BAD USE OF THE <term-relational-tree> tag, you should provide a json_path parameter which is a url' +
+ 'pointing to your solr server with a LABEL_TO_REPLACE string where the widget need to replace with the given label<br>' +
+ 'ex : <term-relational-tree label="lung" ontology-name="EFO" json-path="http://localhost:8983/solr/ontology/select?q=label%3ALABEL_TO_REPLACE+AND+ontology_name%3AONTOLOGY_NAME_TO_REPLACE&rows=1&wt=json&indent=true"></term-relational-tree></div>';
+
+ //$('.term-relational-tree').append(html_to_inject);
+ this.append(html_to_inject);
+ }
+ //If the json_path does not contain a LABEL_TO_REPLACE string then send an error message.
+ else if (json_path.indexOf("ONTOLOGY_NAME_TO_REPLACE") == -1) {
+ html_to_inject = '<div class="msgError">BAD USE OF THE <term-relational-tree> tag, you should provide a json_path parameter which is a url' +
+ 'pointing to your solr server with a ONTOLOGY_NAME_TO_REPLACE string where the widget need to replace with the given ontology-name<br>' +
+ 'ex : <term-relational-tree label="lung" ontology-name="EFO" json-path="http://localhost:8983/solr/ontology/select?q=label%3ALABEL_TO_REPLACE+AND+ontology_name%3AONTOLOGY_NAME_TO_REPLACE&rows=1&wt=json&indent=true"></term-relational-tree></div>';
+
+ //$('.term-relational-tree').append(html_to_inject);
+ this.append(html_to_inject);
+ }
+ //If the user didn't provide the label parameter then send an error message.
+ else if (typeof label == 'undefined') {
+ html_to_inject = '<div class="msgError">BAD USE OF THE <term-relational-tree> tag, you should at least provide a label parameter<br>' +
+ 'ex : <term-relational-tree label="lung"></term-relational-tree></div>';
+ //$('.term-relational-tree').append(html_to_inject);
+ this.append(html_to_inject);
+ }
+ else if (typeof ontology_name == 'undefined') {
+ html_to_inject = '<div class="msgError">BAD USE OF THE <term-relational-tree> tag, you should at least provide an ontology-name parameter<br>' +
+ 'ex : <term-relational-tree label="lung" ontology-name="EFO"></term-relational-tree></div>';
+ //$('.term-relational-tree').append(html_to_inject);
+ this.append(html_to_inject);
+ }
+
+
+ //Finally if the user has provided everything then parse the json, build the term overview and inject it in the <term-relational-tree> tag.
+ else {
+
+ var full_path = json_path.replace("LABEL_TO_REPLACE", label);
+ full_path = full_path.replace("ONTOLOGY_NAME_TO_REPLACE", ontology_name);
+ //because the url contains the string json.wrf=on_data, then javascript knows that when
+ // $.getJSON(full_path);
+ // is called it should build the json object from the given full_path parameter and send it to the on_data function.
+ full_path = full_path + "&wt=json&json.wrf=on_data&callback=?"
+ console.log("FULL_PAHT = " + full_path);
+ $.getJSON(full_path);//,function(json){
+ }
+ }
+
+}(jQuery));
+
+function solr_has_children(json){
+ var hasChildren = json.response.docs[0].has_children;
+ if(hasChildren){
+ var label = json.response.docs[0].label;
+ var uri = json.response.docs[0].uri;
+ var bbop_sibling_graph_json_string = json.response.docs[0].bbop_direct_children_json;
+ console.log("label = " + label);
+ jQuery('#' + label).addClass('solrCollapsibleListClosed');
+ jQuery('#' + label).unbind('click').click(function(event) {
+ console.log("BOnjour\n\n");
+ console.log("jQuery('#' + label).attr(class) = " + jQuery('#' + label).attr("class") + "\n\n");
+
+ event.stopPropagation();
+
+ //jQuery('#' + label).attr("class", "solrCollapsibleListOpen");
+ //jQuery('#' + label).addClass('solrCollapsibleListOpen').removeClass('solrCollapsibleListClosed');
+ var elmtClass = jQuery(this).attr("class");
+ console.log("elmtClass = " + elmtClass+ " index of : " + elmtClass.indexOf("solrCollapsibleListClosed") + "_\n");
+ if (elmtClass.indexOf("solrCollapsibleListClosed") == 0){
+ jQuery(this).removeClass("solrCollapsibleListClosed");
+ jQuery(this).addClass(' solrCollapsibleListOpen');
+ console.log("id = " + jQuery(this).attr('id'));
+ var toInject = buildAndInjectTree(json, uri, true);
+ toInject = toInject.substring(toInject.indexOf("</font>") + 7, toInject.lastIndexOf("</li>"));
+ jQuery(this).append(toInject);
+ }else if (elmtClass.indexOf("solrCollapsibleListOpen") == 0){
+ jQuery(this).find( "ul").empty();
+ jQuery(this).removeClass("solrCollapsibleListOpen");
+ jQuery(this).addClass("solrCollapsibleListClosed");
+ }
+
+ });
+ console.log("\n\n\n");
+
+
+ }
+}
+
+function on_data(json) {
+
+
+ //Get the html description of the tree
+ var collapsibleHtml = "<ul class=\"collapsibleList\">"
+ + buildAndInjectTree(json, undefined, false);
+ +"</ul>";
+
+ //Inject the html description of the tree in the element with id "myid"
+ var element = document.getElementById("myid");
+ element.innerHTML = collapsibleHtml ;
+
+ // make ul element with class="collapsibleList" collapsible
+ CollapsibleLists.apply();
+ console.log("\n\n");
+}
+
+
+function buildAndInjectTree(json,root,childrenRequired){
+
+ var bbop_graph_json_string;
+ if(childrenRequired){
+ var bbop_graph_json_string = json.response.docs[0].bbop_direct_children_json;
+
+ }else {
+ var bbop_graph_json_string = json.response.docs[0].bbop_sibling_graph_json;
+ }
+ console.log("bbop_graph_json_string = " + bbop_graph_json_string);
+ var bbop_graph_json = JSON.parse(bbop_graph_json_string);
+
+ var requestedTermLabel = json.response.docs[0].label;
+ console.log("requestedTermLabel = " + requestedTermLabel);
+
+ var treeData = new Object();
+
+ var all_children;
+ var all_parent = [];
+
+ // The bbop_sibling_graph_json which is stored in the solR index is composed of 2 part :
+ // the node part where all the node composing the tree are described
+ // the edge part where the tree is described
+ // From the node part we get all the term IRI and label and build and iri2label array associating
+ // the iri with their label as follow :
+ // IRI[\t]label
+ // This array will be used later on when building the tree to display the the node label in the nodes rather then
+ // the node IRI.
+ var iri2label = [];
+ for (var i = 0; i<bbop_graph_json.nodes.length; i++){
+ var iri =bbop_graph_json.nodes[i].IRI;
+ var label = bbop_graph_json.nodes[i].LABEL;
+ console.log(iri + " = " + label + "\n");
+ iri2label[iri2label.length] = iri + "\t" + label;
+ }
+
+
+ //Walking through the bbob_sibling_graph_json.edges description of the tree to build the treeData object.
+ //There I have used the javascript object treeData as a 'dictionnary', 'hash' or 'map' to associate a nodes with
+ // an array of their children.
+ // treeData[http://ebi.ac.uk/efo/EFO_000001] woulr return and array containing the IRI of the direct children of that
+ // node.
+ for (var i = 0; i < bbop_graph_json.edges.length; i++) {
+
+
+ var obj = bbop_graph_json.edges[i].obj;
+ var sub = bbop_graph_json.edges[i].sub;
+
+ all_children = all_children + "\t" + obj;
+ all_parent[all_parent.length] = sub;
+
+
+ var children_array = treeData[sub];
+ if (typeof children_array == 'undefined') {
+ children_array = [];
+ }
+ children_array[children_array.length] = obj;
+ treeData[sub] = children_array;
+
+
+ }
+
+ //Search for the tree root (i.e. : the one element which has no parent).
+ if(!root) {
+ for (var i = 0; i < all_parent.length; i++) {
+ var parent = all_parent[i];
+ if (all_children.indexOf(parent) == -1) {
+ root = parent;
+ }
+ }
+ }
+ console.log("ROOT = " + root + "\n");
+
+ return readTreeData(treeData, root, iri2label, requestedTermLabel,childrenRequired);
+
+}
+
+
+//Returns true if the iri term has children, false if it doesn't.
+//treeData : an object which associates parents with and array of direct children
+// ex : { http://www.ebi.ac.uk/efo/EFO_0000001 : ["http://www.ifomis.org/bfo/1.1/snap#SpecificallyDependentContinuant","http://www.ifomis.org/bfo/1.1/snap#MaterialEntity","http://www.ifomis.org/bfo/1.1/snap#Site","http://purl.obolibrary.org/obo/IAO_0000030", "http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"],
+// http://www.ifomis.org/bfo/1.1/snap#SpecificallyDependentContinuant : ["http://www.ifomis.org/bfo/1.1/snap#Disposition", "http://www.ifomis.org/bfo/1.1/snap#Function", "http://www.ifomis.org/bfo/1.1/snap#Role", "http://www.ifomis.org/bfo/1.1/snap#Quality"]
+// }
+//
+function hasChildren(treeData, iri){
+ var rootChildren = treeData[iri];
+ if(typeof rootChildren !== 'undefined' ) {
+
+ if(rootChildren.length !== 0) {
+ return true;
+ }else{
+ return false;
+ }
+ }else{
+ return false;
+ }
+
+}
+
+//
+// Recursive function which build the tree.
+// treeData : an object which associates parents with and array of direct children
+// ex : { http://www.ebi.ac.uk/efo/EFO_0000001 : ["http://www.ifomis.org/bfo/1.1/snap#SpecificallyDependentContinuant","http://www.ifomis.org/bfo/1.1/snap#MaterialEntity","http://www.ifomis.org/bfo/1.1/snap#Site","http://purl.obolibrary.org/obo/IAO_0000030", "http://www.ifomis.org/bfo/1.1/span#ProcessualEntity"],
+// http://www.ifomis.org/bfo/1.1/snap#SpecificallyDependentContinuant : ["http://www.ifomis.org/bfo/1.1/snap#Disposition", "http://www.ifomis.org/bfo/1.1/snap#Function", "http://www.ifomis.org/bfo/1.1/snap#Role", "http://www.ifomis.org/bfo/1.1/snap#Quality"]
+// }
+// root : the root of the tree
+// ex :http://www.ebi.ac.uk/efo/EFO_0000001
+// iri2label : an array of cells containing the iri of a term followed by its label
+// ex : http://www.ebi.ac.uk/efo/EFO_0000001 experimental factor
+// requestedTermLabel : the term for which we're building the tree ( this is so that it can be highlighted when displayed (if not given, nothing will be highlighted).
+//
+// Return : an html string representing the tree.
+// ex : <ul class="collapsibleList">
+// <li class=" collapsibleListOpen"><font color="#4D4D4D"> experimental factor</font>
+// <ul class="collapsibleList collapsibleList">
+// <li class=" collapsibleListOpen"><font color="#4D4D4D"> material property</font>
+// <ul class="collapsibleList collapsibleList collapsibleList">
+// <li class=" collapsibleListOpen"><font color="#4D4D4D"> disposition</font>
+// <ul class="collapsibleList collapsibleList collapsibleList collapsibleList">
+// <li class=" collapsibleListOpen"><font color="#4D4D4D"> disease</font>
+// <ul class="collapsibleList collapsibleList collapsibleList collapsibleList collapsibleList">
+// <li class=" collapsibleListOpen"><font color="#4D4D4D"> brain disease</font>
+// <ul class="collapsibleList collapsibleList collapsibleList collapsibleList collapsibleList collapsibleList">
+// <li><font color="#FFC36E"> insomnia</font></li><li><font color="#4D4D4D"> Genetic neurodegenerative disease</font></li>
+// <li><font color="#4D4D4D"> narcolepsy with cataplexy</font></li><li><font color="#4D4D4D"> mental retardation</font></li>
+// <li><font color="#4D4D4D"> Genetic dementia</font></li>
+// <li><font color="#4D4D4D"> memory impairment</font></li>
+// <li><font color="#4D4D4D"> Pick disease</font></li>
+// <li><font color="#4D4D4D"> central nervous system cyst</font></li>
+// <li><font color="#4D4D4D"> dementia</font></li>
+// </ul>
+// </li>
+// <li><font color="#4D4D4D"> mode of inheritance</font></li>
+// <li><font color="#4D4D4D"> normal</font></li>
+// <li><font color="#4D4D4D"> mental health</font></li>
+// </ul>
+// </li>
+// <li><font color="#4D4D4D"> function</font></li>
+// <li><font color="#4D4D4D"> role</font></li>
+// <li><font color="#4D4D4D"> quality</font></li>
+// </ul>
+// </li>
+// <li><font color="#4D4D4D"> material entity</font></li>
+// <li><font color="#4D4D4D"> site</font></li>
+// <li><font color="#4D4D4D"> information entity</font></li>
+// <li><font color="#4D4D4D"> process</font></li>
+// </ul>
+// </li>
+// </ul>
+//
+function readTreeData(treeData, root, iri2label, requestedTermLabel, childrenRequired){
+
+ //console.log("json path = " + json_path + "\n");
+ //short_form
+ var string = "";
+
+ //Getting the short form of the IRI to search in solr with short_form.
+ //
+ // ex : IRI = http://purl.obolibrary.org/obo/IAO_0000030
+ // short_form = IAO_0000030
+ //
+ // IRI = http://www.ifomis.org/bfo/1.1/span#ProcessualEntity
+ // short_form = ProcessualEntity
+ //
+ // IRI = http://www.ebi.ac.uk/efo/EFO_0000684
+ // short_form = EFO_0000684
+ //
+ short_form = root.substr(root.lastIndexOf("/")+1, root.length).replace("span#", "").replace("snap#","");
+ console.log("short_form = " + short_form);
+
+
+ if(! treeData[root]) {
+ var subTerm_solrPath = json_path;
+ subTerm_solrPath = subTerm_solrPath.replace("LABEL_TO_REPLACE", short_form);
+ subTerm_solrPath = subTerm_solrPath.replace("ONTOLOGY_NAME_TO_REPLACE", ontology_name);
+ subTerm_solrPath = subTerm_solrPath.replace("label", "short_form");
+ subTerm_solrPath = subTerm_solrPath + "&wt=json&json.wrf=solr_has_children&callback=?"
+
+ jQuery.getJSON(subTerm_solrPath);//,function(json){
+
+
+ console.log("subTerm_solrPath = " + subTerm_solrPath);
+ }
+
+ var label;
+ for(var k=0;k<iri2label.length; k++){
+ var value = iri2label[k];
+ if(value.indexOf(root) != -1){
+ var splitValue = value.split("\t");
+ label = splitValue[1];
+ }
+ }
+
+ //Right the node label in orange if the node is the node for which the user requested the tree or in dark grey
+ // otherwise.
+ var color = "#4D4D4D"; //dark grey
+ console.log( "Bip " + requestedTermLabel + ", " + root + ", " + label + "\n");
+ if(requestedTermLabel == label && !childrenRequired){
+ color = "#FFC36E";//orange
+ }
+
+ string = string + "<li id=\"" + label+ "\">";
+ string = string + "<font color=" +color + "> " + label + "</font>";
+ if(hasChildren(treeData, root)) {
+ if(childrenRequired){
+ string = string + "<ul class=\"solrCollapsibleList\">";
+
+ }else {
+ string = string + "<ul class=\"collapsibleList\">";
+ }
+ }
+
+ var rootChildren = treeData[root];
+ if(typeof rootChildren !== 'undefined' ) {
+
+ if(rootChildren.length !== 0) {
+
+ for (var i = 0; i < rootChildren.length; i++) {
+
+ string = string + readTreeData(treeData, rootChildren[i], iri2label,requestedTermLabel,childrenRequired);
+
+ }
+
+ }
+ }
+ if(hasChildren(treeData, root)) {
+ string = string + "</ul>";
+ }
+ string = string + "</li>";
+
+ return string;
+
+
+}
+
+
+
+
diff --git a/ols-ui/ontologyWidget/relationalTree/script/relationalTreeIndented.js b/ols-ui/ontologyWidget/relationalTree/script/relationalTreeIndented.js
new file mode 100644
index 00000000..86a69916
--- /dev/null
+++ b/ols-ui/ontologyWidget/relationalTree/script/relationalTreeIndented.js
@@ -0,0 +1,459 @@
+jQuery(document).ready(function () {
+ jQuery.noConflict();
+ jQuery('.term-relational-tree').injectRelationalTree();
+
+
+});
+
+var element_to_inject;
+var json_path;
+var label;
+var ontology_name;
+
+//make it a jquery plugin that can be attached to any element.
+(function ($) {
+
+
+ //function getDataAndInject(){
+ $.fn.injectRelationalTree = function () {
+
+ element_to_inject = this;
+
+ //Get the <term-relational-tree> tag label attribute
+ //var label = $(".term-relational-tree").attr("data-label");
+ var label = this.attr("data-label");
+ //Get the <term-relational-tree> tag ontology-name attribute
+ //var ontology_name= $(".term-relational-tree").attr("data-ontology-name");
+ ontology_name = this.attr("data-ontology-name");
+
+ //Get the <term-relational-tree> tag json-path attribute
+ // The json_path the url pointing to the solr server, or the server which given a label parameter returns the expected json.
+ // The label part of the url should contain the following string "LABEL_TO_REPLACE" so that the widget can easily replace
+ // this with the given label.
+
+ // If the json_path was not given use the ebi default url.
+ //var json_path = $(".term-relational-tree").attr("data-json-path")
+ json_path = this.attr("data-json-path");
+ if (typeof json_path == 'undefined' || json_path.indexOf("LABEL_TO_REPLACE") == -1) {
+ json_path = "http://localhost:8983/solr/ontology/select?q=label%3ALABEL_TO_REPLACE&rows=1&wt=json&indent=true";
+ }
+ //If the json_path does not contain a LABEL_TO_REPLACE string then send an error message.
+ else if (json_path.indexOf("LABEL_TO_REPLACE") == -1) {
+ html_to_inject = '<div class="msgError">BAD USE OF THE <term-relational-tree> tag, you should provide a json_path parameter which is a url' +
+ 'pointing to your solr server with a LABEL_TO_REPLACE string where the widget need to replace with the given label<br>' +
+ 'ex : <term-relational-tree label="lung" ontology-name="EFO" json-path="http://localhost:8983/solr/ontology/select?q=label%3ALABEL_TO_REPLACE+AND+ontology_name%3AONTOLOGY_NAME_TO_REPLACE&rows=1&wt=json&indent=true"></term-relational-tree></div>';
+
+ //$('.term-relational-tree').append(html_to_inject);
+ this.append(html_to_inject);
+ }
+ //If the json_path does not contain a LABEL_TO_REPLACE string then send an error message.
+ else if (json_path.indexOf("ONTOLOGY_NAME_TO_REPLACE") == -1) {
+ html_to_inject = '<div class="msgError">BAD USE OF THE <term-relational-tree> tag, you should provide a json_path parameter which is a url' +
+ 'pointing to your solr server with a ONTOLOGY_NAME_TO_REPLACE string where the widget need to replace with the given ontology-name<br>' +
+ 'ex : <term-relational-tree label="lung" ontology-name="EFO" json-path="http://localhost:8983/solr/ontology/select?q=label%3ALABEL_TO_REPLACE+AND+ontology_name%3AONTOLOGY_NAME_TO_REPLACE&rows=1&wt=json&indent=true"></term-relational-tree></div>';
+
+ //$('.term-relational-tree').append(html_to_inject);
+ this.append(html_to_inject);
+ }
+ //If the user didn't provide the label parameter then send an error message.
+ else if (typeof label == 'undefined') {
+ html_to_inject = '<div class="msgError">BAD USE OF THE <term-relational-tree> tag, you should at least provide a label parameter<br>' +
+ 'ex : <term-relational-tree label="lung"></term-relational-tree></div>';
+ //$('.term-relational-tree').append(html_to_inject);
+ this.append(html_to_inject);
+ }
+ else if (typeof ontology_name == 'undefined') {
+ html_to_inject = '<div class="msgError">BAD USE OF THE <term-relational-tree> tag, you should at least provide an ontology-name parameter<br>' +
+ 'ex : <term-relational-tree label="lung" ontology-name="EFO"></term-relational-tree></div>';
+ //$('.term-relational-tree').append(html_to_inject);
+ this.append(html_to_inject);
+ }
+
+
+ //Finally if the user has provided everything then parse the json, build the term overview and inject it in the <term-relational-tree> tag.
+ else {
+
+ var full_path = json_path.replace("LABEL_TO_REPLACE", label);
+ full_path = full_path.replace("ONTOLOGY_NAME_TO_REPLACE", ontology_name);
+ //because the url contains the string json.wrf=on_data, then javascript knows that when
+ // $.getJSON(full_path);
+ // is called it should build the json object from the given full_path parameter and send it to the on_data function.
+ full_path = full_path + "&wt=json&json.wrf=on_data&callback=?"
+
+ $.getJSON(full_path);//,function(json){
+ }
+ }
+
+}(jQuery));
+
+
+
+
+
+function getLabel (data){
+
+ label = data.response.docs[0].label;
+ short_form = data.response.docs[0].short_form;
+
+ //label = 'fish';
+ console.log("getLabel callback function THE LABEL = " + label);
+
+ var x = document.getElementsByTagName("text");
+ var i;
+ for (i = 0; i < x.length; i++) {
+ var text = x[i].innerHTML;
+ var lastIndexOf = text.lastIndexOf('/');
+ lastIndexOf++;
+ var short_form_from_URI = text.substr(lastIndexOf);
+ short_form_from_URI = short_form_from_URI.replace('snap#','');
+
+ if(short_form.indexOf(short_form_from_URI) != -1){
+ x[i].innerHTML=label;
+ }
+ console.log("text = " + text);
+ }
+
+
+
+
+}
+
+
+function on_data(json) {
+
+ var bbop_sibling_graph_json_string = json.response.docs[0].bbop_sibling_graph_json;
+
+ var bbop_sibling_graph_json = JSON.parse(bbop_sibling_graph_json_string);
+
+ var requestedTermLabel = json.response.docs[0].label;
+
+ var treeData = new Object();
+
+
+
+ var array_of_parents = [];
+ var all_children;
+ var all_parent = [];
+
+ var iri2label = [];
+ for (var i = 0; i<bbop_sibling_graph_json.nodes.length; i++){
+ var iri =bbop_sibling_graph_json.nodes[i].IRI;
+ var label = bbop_sibling_graph_json.nodes[i].LABEL;
+ console.log(iri + " = " + label + "\n");
+ iri2label[iri2label.length] = iri + "\t" + label;
+ }
+
+ console.log("iri2label.length = " + iri2label.length + "\n");
+
+ for (var i = 0; i < bbop_sibling_graph_json.edges.length; i++) {
+
+
+ var obj = bbop_sibling_graph_json.edges[i].obj;
+ var sub = bbop_sibling_graph_json.edges[i].sub;
+
+ all_children = all_children + "\t" + obj;
+ all_parent[all_parent.length] = sub;
+
+
+ var children_array = treeData[sub];
+ if (typeof children_array == 'undefined') {
+ //console.log("children_array is undefined\n");
+ children_array = [];
+ }else{
+ //console.log("children_array is NOT undefined\n");
+
+ }
+ children_array[children_array.length] = obj;
+ treeData[sub] = children_array;
+ //console.log("adding for parent " + sub + " array of children with " + children_array.length + " children including " + obj+ "\n");
+
+ //console.log("obj = " + obj + "\n");
+ //console.log("sub = " + sub + "\n\n");
+
+
+ }
+
+ //Search for the tree root
+ var root;
+ for (var i = 0; i < all_parent.length; i++) {
+ var parent = all_parent[i];
+ if (all_children.indexOf(parent) == -1) {
+ root = parent;
+ }
+
+ }
+
+
+ //var treeData =
+ //{
+ // "name": "lung",
+ // "children": [
+ // {
+ // "name": "has_parts",
+ // "children":[
+ // {"name": "respiratory system"}
+ // ]
+ // },
+ // {
+ // "name": "develops_from",
+ // "children": [
+ // {"name": "digetive_system"},
+ // {"name":"endoderm"},
+ // {"name" : "primordium"},
+ // ]
+ // }
+ // ]
+ //};
+ //
+
+
+
+
+
+
+ // Create a svg canvas
+ var vis = d3.select("#myid").append("svg:svg")
+ .attr("width", 2500)
+ .attr("height", 1500)
+ .append("svg:g")
+ .attr("transform", "translate(200, 0)"); // shift everything to the right
+
+
+
+ //var g = vis.append("g")
+ // .attr("stroke", "#4D4D4D")
+ // .attr("transform","translate(10,40)");
+ //
+ //
+ //g.append("rect").
+ // attr("r",10)
+ // .attr("width",120)
+ // .attr("height","40")
+ // .attr("style","fill:#DBEEFF;fill-opacity:1;stroke-width:1;stroke:#77BEFE")
+ // .attr("align-content","center");
+ //
+ //g = vis.append("g")
+ // .attr("stroke", "#4D4D4D")
+ // .attr("transform","translate(20,90)");
+ //
+ //
+ //g.append("rect").
+ // attr("r",10)
+ // .attr("width",208)
+ // .attr("height","40")
+ // .attr("style","fill:#DBEEFF;fill-opacity:1;stroke-width:1;stroke:#77BEFE")
+ // .attr("align-content","center");
+
+
+
+ var d3Node = {"name": root} ;
+ d3Node = readTreeData(treeData, root, 1, iri2label, requestedTermLabel,vis,1);
+
+
+
+
+
+
+// // Create a tree "canvas"
+// var tree = d3.layout.tree()
+// .size([1500,1200]);
+// //tree.nodeSize(100);
+// var diagonal = d3.svg.diagonal()
+// //change x and y (for the left to right tree)
+// .projection(function(d) { return [d.y, d.x]; });
+//
+//
+//
+// // Preparing the data for the tree layout, convert data into an array of nodes
+// var nodes = tree.nodes(d3Node);
+// // Create an array with all the links
+// var links = tree.links(nodes);
+//
+// var link = vis.selectAll("pathlink")
+// .data(links)
+// .enter().append("svg:path")
+// .attr("class", "link")
+// .attr("d", diagonal)
+// .attr("stroke:gray;stroke-width:1;")
+//
+// var node = vis.selectAll("g.node")
+// .data(nodes)
+// .enter().append("svg:g")
+// .attr("stroke", "#4D4D4D")
+// .attr("transform", function(d) { return "translate(" + d.y + "," + d.x + ")"; })
+//
+// //x = d.x;
+// //y = d.y;
+// //console.log("x = " + x);
+//
+// // Add the dot at every node
+// node.append("svg:rect")
+// .attr("width", function(d) { name = d.name; length = name.length*6 + name.length*6*0.15; return length})
+// .attr("height",40)
+// .attr("style", function(d) { if(d.type == 'red') {return "fill:#FFEFD8;fill-opacity:1;stroke-width:1;stroke:#FFC36E"} else {return "fill:#DBEEFF;fill-opacity:1;stroke-width:1;stroke:#77BEFE"}})
+//// .attr("x",x)
+//// .attr("y",y)
+// .attr("align-content","center")
+// .attr("transform", function(d){
+// name = d.name;
+// length = name.length*6+name.length*6*0.1;
+// if(!d.children){
+// string = "translate(0,-20)";
+// return string;
+// }
+// string = "translate(0,-20)";
+// return string
+// })
+// .attr("rx","10")
+// .attr("rx","10");
+//
+// // place the name atribute left or right depending if children
+// node.append("svg:text")
+// .attr("dx", function(d) {return 0;})
+////return d.children ? -8 : 8; })
+// .attr("dy", 3)
+// // .attr("text-anchor", function(d) { return d.children ? "end" : "start"; })
+// .text(function(d) { return d.name; }).attr("style","font-family:sans-serif;font-weight: 200;font-size:13px")
+//
+//
+//
+//
+//
+//
+//
+// console.log("\n\n\n\n\n\n\n");
+
+
+ //console.log("bbop_sibling_graph_json_string = " + bbop_sibling_graph_json_string);
+}
+var labelNumber = 0;
+
+function hasChildren(treeData, iri){
+ var rootChildren = treeData[iri];
+ if(typeof rootChildren !== 'undefined' ) {
+
+ if(rootChildren.length !== 0) {
+ return true;
+ }else{
+ return false;
+ }
+ }else{
+ return false;
+ }
+
+}
+
+function readTreeData(treeData, root, tabCount, iri2label, requestedTermLabel, vis){
+
+ labelNumber++;
+ var solr_path = json_path;
+
+ var label;
+ for(var k=0;k<iri2label.length; k++){
+ var value = iri2label[k];
+ if(value.indexOf(root) != -1){
+ var splitValue = value.split("\t");
+ label = splitValue[1];
+ }
+ }
+
+
+
+ var tabs = "\t";
+ for(i = 0; i<tabCount;i++){
+ tabs = tabs + "\t";
+ }
+
+ var color = "#4D4D4D";
+ console.log(requestedTermLabel + ", " + root + ", " + label + "\n");
+ if(requestedTermLabel == label){
+ color = "#FFC36E";
+ }
+
+ var width = label.length*6 + label.length*6*0.15;
+ var x = 20 * tabCount;
+ var y = labelNumber*10 + 10*labelNumber;
+ console.log(tabs + label + "(" + x + "," + y + ")\n");
+
+
+
+ var g = vis.append("g")
+ .attr("stroke", color)
+ .attr("transform","translate(" + x + "," + y+ ")")
+
+ if(hasChildren(treeData, root)){
+ g.append("text").
+ attr("style","font-family:sans-serif;font-weight: 200;font-size:13px")
+ .attr("dx","0")
+ .attr("dy", 3)
+ .text("+ " + label)
+ .attr("id",label);
+ }else {
+ //g.append("rect").
+ // attr("r",10)
+ // .attr("width",width)
+ // .attr("height","40")
+ // .attr("style","fill:#DBEEFF;fill-opacity:1;stroke-width:1;stroke:#77BEFE")
+ // .attr("align-content","center");
+ g.append("text").
+ attr("style", "font-family:sans-serif;font-weight: 200;font-size:13px")
+ .attr("dx", "0")
+ .attr("dy", 3)
+ .text(label);
+ }
+
+
+
+
+
+
+
+ //solr_path = solr_path + "&wt=json&json.wrf=get_label&callback=?"
+ //console.log("solr_path = " + solr_path);
+ var color = 'black';
+ if(requestedTermLabel == label){
+ color = 'red';
+ }
+
+ var d3Node = {"name":label, "type" : color};
+
+
+
+ tabCount++;
+
+
+ //console.log("looking for " + root + " in treeData\n");
+ var rootChildren = treeData[root];
+ if(typeof rootChildren !== 'undefined' ) {
+
+ if(rootChildren.length !== 0) {
+ var childrenArray = [];
+
+ for (var i = 0; i < rootChildren.length; i++) {
+
+
+ var children = d3Node['children'];
+ if(typeof children == 'undefined'){
+ children = [];
+ }
+
+ //console.log(tabs + rootChildren[i] + "\n");
+ var child = readTreeData(treeData, rootChildren[i], tabCount,iri2label,requestedTermLabel, vis, labelNumber);
+
+ children[children.length]=child;
+ d3Node['children']=children;
+
+
+ }
+
+ }
+ }
+
+ return d3Node;
+
+
+}
+
+
+
+
diff --git a/ols-ui/ontologyWidget/termOverview/css/ontology.css b/ols-ui/ontologyWidget/termOverview/css/ontology.css
new file mode 100644
index 00000000..20d8ec28
--- /dev/null
+++ b/ols-ui/ontologyWidget/termOverview/css/ontology.css
@@ -0,0 +1,88 @@
+
+html {
+ font-family: sans-serif;
+ /* 1 */
+ -ms-text-size-adjust: 100%;
+ /* 2 */
+ -webkit-text-size-adjust: 100%;
+ /* 2 */ }
+.msgError{
+ color:#AD5E5C;
+ font-size:1.2em;
+ font-family: 'helvetica', Georgia, arial, sans-serif;
+ font-weight:bold;
+}
+table {
+ width: 100%;
+ max-width: 100%;
+ margin-bottom: 1.5em;
+ border-collapse: collapse;
+ border-spacing: 0;
+ background-color: transparent; }
+table th,
+table td {
+ padding: .5em;
+ vertical-align: top;
+ border-top: 1px solid #8c9bab;
+ font-size: 0.875em;
+ line-height: 1.5;
+ text-align: left; }
+table th {
+ font-weight: bold; }
+table thead th {
+ background-color:#DBEEFF;
+ vertical-align: bottom; }
+table thead td {
+ background-color:#DBEEFF;
+}
+table thead {
+ background-color:#DBEEFF;
+}
+table colgroup + thead tr:first-child th,
+table colgroup + thead tr:first-child td {
+ border-top: 0; }
+table thead:first-child tr:first-child th,
+table thead:first-child tr:first-child td {
+ border-top: 0; }
+table tbody {
+ overflow: auto;
+}
+
+table tbody + tbody {
+ border-top: 2px solid #8c9bab; }
+
+.table-condensed th,
+.table-condensed td {
+ padding: .25em .3125em; }
+
+.table-bordered {
+ border: 1px solid #8c9bab;
+ border-left: 0;
+ border-collapse: separate;
+ *border-collapse: collapsed; }
+.table-bordered th,
+.table-bordered td {
+ border-left: 1px solid #8c9bab; }
+.table-bordered thead:first-child tr:first-child th {
+ border-top: 0; }
+.table-bordered tbody:first-child tr:first-child th,
+.table-bordered tbody:first-child tr:first-child td {
+ border-top: 0; }
+
+.table-striped tbody tr:nth-child(odd) td,
+.table-striped tbody tr:nth-child(odd) th {
+ background-color: #c7ced6; }
+.tbl_container{ overflow:auto; width: 100%;height: 100%; }
+.node {
+ fill: #fff;
+ stroke: steelblue;
+ stroke-width: 3px;
+}
+
+.node text { font: 12px sans-serif; }
+
+.link {
+ fill: none;
+ stroke: #ccc;
+ stroke-width: 2px;
+}
\ No newline at end of file
diff --git a/ols-ui/ontologyWidget/termOverview/index.html b/ols-ui/ontologyWidget/termOverview/index.html
new file mode 100644
index 00000000..0834c96c
--- /dev/null
+++ b/ols-ui/ontologyWidget/termOverview/index.html
@@ -0,0 +1,110 @@
+<!DOCTYPE html>
+
+<html>
+<head>
+ <link rel="stylesheet" href="css/ontology.css">
+ <script src="script/jquery.min.1.11.2.js" ></script>
+ <script src="script/termOverview.js"></script>
+ <script src="script/jquery.mCustomScrollbar.concat.min.js" ></script>
+ <script type="text/javascript">
+ function update() {
+ document.getElementById("myid").setAttribute("data-label",document.getElementById("givenLabel").value);
+ document.getElementById("myid").innerHTML="";
+ jQuery.noConflict();
+ jQuery('.term-overview').injectTermOverview();
+ }
+ </script>
+ <!--<script src="http://ajax.googleapis.com/ajax/libs/jquery/1.11.2/jquery.min.js"></script>-->
+</head>
+<body>
+<h1>Term overview tag</h1>
+This tag can be used if you have an ontologie term label and want to get an overview of it as shown below.<br>
+<h2>Term overview example</h2>
+<br>
+Label : <input type="text" id="givenLabel" value="insomnia"><br><br>
+<button onclick="update()">Update Overview</button>
+<br>
+<br>
+<div id="myid" class="term-overview" data-label="insomnia" data-ontology-name="EFO" data-json-path="http://localhost:8983/solr/ontology/select?q=label%3ALABEL_TO_REPLACE+AND+ontology_name%3AONTOLOGY_NAME_TO_REPLACE&rows=1&wt=json&indent=true"></div>
+<h2>Integrating it in your code as a jquery plugin</h2>
+If you need to learn about jquery plugin, go <a href="http://learn.jquery.com/plugins/">here</a>.<br>
+If you want to have a look at the jquery plugin registry, go <a href="http://plugins.jquery.com/">here</a><br>
+<br>
+For that, just import the following files in the head tag of your html page :
+<ul>
+ <li>the ontology.css file</li>
+ <li>the jquery.min.1.11.2.js javascript file</li>
+ <li>the termOverview.js javascript file</li>
+ <li>the jquery.mCustomScrollbar.concat.min.js javascript file</li>
+</ul>
+<br>
+Inside the body of your html page, add any tag (div or p) with the following attributes :
+<ul>
+ <li>data-label : this is the label of the term you're interested in (MANDATORY).</li>
+ <li>data-ontology-name : this is the name of the ontology you want to retrieve the term from (MANDATORY)</li>
+ <li>data-json-path : this is the path to the solr server where your ontologies are indexed. If not given it will default to the EBI solr server. If the url is given, it should contain the
+ string "LABEL_TO_REPLACE" where the given label should be inserted and the string ONTOLOGY_NAME_TO_REPLACE where the ontology name should be inserted. (NON MANDATORY)</li>
+</ul>
+Then in a script tag add the following code :<br>
+jQuery(document).ready(function () {<br>
+ jQuery.noConflict();<br>
+ jQuery('p').injectTermOverview();<br>
+});<br>
+<br>
+Your page should look like :<br><br>
+<font color="#1e90ff"><br>
+<html><br>
+<head><br>
+ <link rel="stylesheet" href="css/ontology.css"><br>
+ <script src="script/jquery.min.1.11.2.js" ></script><br>
+ <script src="script/termOverview.js"></script><br>
+ <script src="script/jquery.mCustomScrollbar.concat.min.js" ></script><br>
+ <script><br>
+ jQuery(document).ready(function () {<br>
+ jQuery.noConflict();<br>
+ jQuery('p').injectTermOverview();<br>
+ });<br>
+ </script><br>
+</head><br>
+<body><br>
+<p data-label="insomnia" data-ontology-name="EFO" data-json-path="http://localhost:8983/solr/ontology/select?q=label%3ALABEL_TO_REPLACE+AND+ontology_name%3AONTOLOGY_NAME_TO_REPLACE&rows=1&wt=json&indent=true"></p><br>
+</body><br>
+</html><br>
+</font>
+<br>
+<h2>Integrating it just by adding a div tag in your html page</h2>
+<br>
+For that, just import the following files in the head tag of your html page :
+<ul>
+ <li>the ontology.css file</li>
+ <li>the jquery.min.1.11.2.js javascript file</li>
+ <li>the termOverview.js javascript file</li>
+ <li>the jquery.mCustomScrollbar.concat.min.js javascript file</li>
+</ul>
+<br>
+and inside the body tag of your html page add one of the following tag :<br>
+<br>
+<font color="#1e90ff">
+<<strong>term-overview json-path</strong>="http://localhost:8983/solr/ontology/select?q=label%3ALABEL_TO_REPLACE&rows=1&wt=json&indent=true" <strong>ontology-name</strong>="EFO" <strong>label</strong>="lung"></term-overview><br>
+</font>
+<br>
+The <strong>json_path</strong> attribute is the url pointing to your solr server where your ontology/ontologies is/are indexed, if you don't have one just don't put the json_path attribute and the <a href="http://www.ebi.ac.uk">EBI</a> default one will be used.<br>
+The <strong>ontology-name</strong> attribute is the name of the name of the ontology for which you want solr to return results.<br>
+The <strong>label</strong> is the label of the term you want to overview.<br>
+<br>
+Your overall page should therefore look like : <br>
+<br>
+<font color="#1e90ff">
+<!DOCTYPE html><br>
+<html><br>
+<head><br>
+ <link rel="stylesheet" href="css/ontology.css"><br>
+ <script src="script/jquery.min.1.11.2.js" ></script><br>
+ <script src="script/termOverview.js"></script><br>
+</head><br>
+<body><br>
+ <<strong>term-overview json-path</strong>="http://localhost:8983/solr/ontology/select?q=label%3ALABEL_TO_REPLACE&rows=1&wt=json&indent=true" <strong>ontology-name</strong>="EFO" <strong>label</strong>="lung"></term-overview><br>
+</body><br>
+</font>
+<br>
+</body>
\ No newline at end of file
diff --git a/ols-ui/ontologyWidget/termOverview/script/jquery.mCustomScrollbar.concat.min.js b/ols-ui/ontologyWidget/termOverview/script/jquery.mCustomScrollbar.concat.min.js
new file mode 100755
index 00000000..e26c9385
--- /dev/null
+++ b/ols-ui/ontologyWidget/termOverview/script/jquery.mCustomScrollbar.concat.min.js
@@ -0,0 +1,5 @@
+/* == jquery mousewheel plugin == Version: 3.1.12, License: MIT License (MIT) */
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+/* == malihu jquery custom scrollbar plugin == Version: 3.0.7, License: MIT License (MIT) */
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0})}),m.each({Height:"height",Width:"width"},function(a,b){m.each({padding:"inner"+a,content:b,"":"outer"+a},function(c,d){m.fn[d]=function(d,e){var f=arguments.length&&(c||"boolean"!=typeof d),g=c||(d===!0||e===!0?"margin":"border");return V(this,function(b,c,d){var e;return m.isWindow(b)?b.document.documentElement["client"+a]:9===b.nodeType?(e=b.documentElement,Math.max(b.body["scroll"+a],e["scroll"+a],b.body["offset"+a],e["offset"+a],e["client"+a])):void 0===d?m.css(b,c,g):m.style(b,c,d,g)},b,f?d:void 0,f,null)}})}),m.fn.size=function(){return this.length},m.fn.andSelf=m.fn.addBack,"function"==typeof define&&define.amd&&define("jquery",[],function(){return m});var ed=a.jQuery,fd=a.$;return m.noConflict=function(b){return a.$===m&&(a.$=fd),b&&a.jQuery===m&&(a.jQuery=ed),m},typeof b===K&&(a.jQuery=a.$=m),m});
diff --git a/ols-ui/ontologyWidget/termOverview/script/termOverview.js b/ols-ui/ontologyWidget/termOverview/script/termOverview.js
new file mode 100644
index 00000000..b6ac1c39
--- /dev/null
+++ b/ols-ui/ontologyWidget/termOverview/script/termOverview.js
@@ -0,0 +1,230 @@
+
+jQuery(document).ready(function () {
+ jQuery.noConflict();
+ jQuery('.term-overview').injectTermOverview();
+
+
+});
+
+var element_to_inject;
+
+//make it a jquery plugin that can be attached to any element.
+(function ($) {
+
+
+ //function getDataAndInject(){
+ $.fn.injectTermOverview = function () {
+
+ element_to_inject = this;
+
+ //Get the <term-overview> tag label attribute
+ //var label = $(".term-overview").attr("data-label");
+ var label = this.attr("data-label");
+ console.log("LABEL = " + label);
+ //Get the <term-overview> tag ontology-name attribute
+ //var ontology_name= $(".term-overview").attr("data-ontology-name");
+ var ontology_name = this.attr("data-ontology-name");
+
+ //Get the <term-overview> tag json-path attribute
+ // The json_path the url pointing to the solr server, or the server which given a label parameter returns the expected json.
+ // The label part of the url should contain the following string "LABEL_TO_REPLACE" so that the widget can easily replace
+ // this with the given label.
+
+ // If the json_path was not given use the ebi default url.
+ //var json_path = $(".term-overview").attr("data-json-path")
+ var json_path = this.attr("data-json-path");
+ if (typeof json_path == 'undefined' || json_path.indexOf("LABEL_TO_REPLACE") == -1) {
+ json_path = "http://localhost:8983/solr/ontology/select?q=label%3ALABEL_TO_REPLACE&rows=1&wt=json&indent=true";
+ }
+ //If the json_path does not contain a LABEL_TO_REPLACE string then send an error message.
+ else if (json_path.indexOf("LABEL_TO_REPLACE") == -1) {
+ html_to_inject = '<div class="msgError">BAD USE OF THE <term-overview> tag, you should provide a json_path parameter which is a url' +
+ 'pointing to your solr server with a LABEL_TO_REPLACE string where the widget need to replace with the given label<br>' +
+ 'ex : <term-overview label="lung" ontology-name="EFO" json-path="http://localhost:8983/solr/ontology/select?q=label%3ALABEL_TO_REPLACE+AND+ontology_name%3AONTOLOGY_NAME_TO_REPLACE&rows=1&wt=json&indent=true"></term-overview></div>';
+
+ //$('.term-overview').append(html_to_inject);
+ this.append(html_to_inject);
+ }
+ //If the json_path does not contain a LABEL_TO_REPLACE string then send an error message.
+ else if (json_path.indexOf("ONTOLOGY_NAME_TO_REPLACE") == -1) {
+ html_to_inject = '<div class="msgError">BAD USE OF THE <term-overview> tag, you should provide a json_path parameter which is a url' +
+ 'pointing to your solr server with a ONTOLOGY_NAME_TO_REPLACE string where the widget need to replace with the given ontology-name<br>' +
+ 'ex : <term-overview label="lung" ontology-name="EFO" json-path="http://localhost:8983/solr/ontology/select?q=label%3ALABEL_TO_REPLACE+AND+ontology_name%3AONTOLOGY_NAME_TO_REPLACE&rows=1&wt=json&indent=true"></term-overview></div>';
+
+ //$('.term-overview').append(html_to_inject);
+ this.append(html_to_inject);
+ }
+ //If the user didn't provide the label parameter then send an error message.
+ else if (typeof label == 'undefined') {
+ html_to_inject = '<div class="msgError">BAD USE OF THE <term-overview> tag, you should at least provide a label parameter<br>' +
+ 'ex : <term-overview label="lung"></term-overview></div>';
+ //$('.term-overview').append(html_to_inject);
+ this.append(html_to_inject);
+ }
+ else if (typeof ontology_name == 'undefined') {
+ html_to_inject = '<div class="msgError">BAD USE OF THE <term-overview> tag, you should at least provide an ontology-name parameter<br>' +
+ 'ex : <term-overview label="lung" ontology-name="EFO"></term-overview></div>';
+ //$('.term-overview').append(html_to_inject);
+ this.append(html_to_inject);
+ }
+ //Finally if the user has provided everything then parse the json, build the term overview and inject it in the <term-overview> tag.
+ else {
+ var full_path = json_path.replace("LABEL_TO_REPLACE", label);
+ full_path = full_path.replace("ONTOLOGY_NAME_TO_REPLACE", ontology_name);
+ //because the url contains the string json.wrf=on_data, then javascript knows that when
+ // $.getJSON(full_path);
+ // is called it should build the json object from the given full_path parameter and send it to the on_data function.
+ full_path = full_path + "&wt=json&json.wrf=on_data&callback=?"
+
+ $.getJSON(full_path);//,function(json){
+ }
+ }
+
+}(jQuery));
+
+
+
+//In order to avoid having the png icons in a separate file which would make the user life a bit more complicated, I include them directly below.
+//png code for the minus icon
+var minus_png = "data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAADAAAAAwCAYAAABXAvmHAAACYElEQVR4nO2ZTWtTQRSGn8k1KErSqi1Uqi3WFq3/oRW60u70PyiiCwVx5V43rsSNgkK7VRA3Ii4Kbf+CtfiBaFSkJEhJ" +
+ "wa/kznFjwVXOuXduciO9D2R3zsz75pyZTGagoGBn46yB06tbETABTJUcR4GBjLX8AmpeeAesrc9UfluSdllHF+EMcBM44YVyOo2GeaAGLB5f2br1erbyXYs3VWBquTkOrDnYFyrQSEvg/NtT1QUt0FSBWHhI78QDlIErgGpArcD4UnPA" +
+ "wWYWqhISCxz6OFetdwpSK+BFjmSnKRERcBJY7hSkGoh9Vnq6g16B/91AW6QXOlKjt1B/698BLRQXLdRdsthGbzvHaprJRRgFbgCjafLBZKBzCeKzB66nnRwgevLtNN00oOgPJnR81YB0cxt63IjE+yhkCP00qu1Cj+qXgZepZhcZAiZT5" +
+ "f5FN6DX+G6IgFAMBvr7lyy8hXImixbKlaKF8qZoobwxtBAbkFcV3Ac1wjTO/fevgOlANUn5zIUJ9UbEdrXo5SrIU2BPqCojMbh7lsCSabiLx14gXEOkhQg9+DxH5I5FmvlyF5EHwAYi54ARYLc510YM1HFuBVjg0mTTkmS+Xv+XsWf1Ib" +
+ "JvpzbQqM0Pt5MkJXkfKAHDDg4nVZYEgQbwZX2mYjJivV4vOedGHBy05gTyQ+DTm9nKTy3QtAZEGBSRKtAKlmYjAvYDX7VA6/tAL8Vvs9cSZDXggZ6fKcaWmuXaXLXjF2cy4L2YHtzywFYBT14G1EOYyUBbet7/22RjIMcWUteddRHnUoHN" +
+ "+cH+/jdVAPwBrDT9OIYx++8AAAAASUVORK5CYII=";
+//png code for the plus icon
+var plus_png = "data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAEAAAABACAYAAACqaXHeAAAACXBIWXMAAAsTAAALEwEAmpwYAAAAGXRFWHRTb2Z0d2FyZQBBZG9iZSBJbWFnZVJlYWR5ccllPAAAAuZJREFUeNrsms9PU0EQx7" +
+ "elFRLTlkYM4URVkBAO5Q8QWrlwM1z8A7yYGP8Iyx9hTDyhVz30KBdpwT9ADoQg/mjVRAlEHu2pltdx9tkDeVh5u7zpTtv9JptNXvt2Zz6dmZ2XPiGsrKysBliRMBaZe1efxCnTZdsrO3cSVWMAZrc8pws4VnCRUVO/IAixJu3YXdCDoQVgZ" +
+ "rOexalk0nEfBAen/N5iYpscwHS5Jn/591yc90GY388llSIhprpRC7ywZ+V8W6PtlHxAGgE3NmrAuKg7X+4m02QAJt964V9hfrJlqkvB0yCmFv6QEfwlbSQC0Oq/RkgxAiyAsFQ4WE6tnr0wvn7ypF3Fu6qoypddgFCG33kpeS2s9Xs2BUyk" +
+ "mAVgAaj1AcQAwEYAawAusYEu+xQI3gkWmivpVVVjGvfSHZ9N4sVjkj4hqpqjQYaO8xdJrhl0/75thSn2VwIAYJYAxf4xRQvMef/6KCV6BsCrQ1mwSh0/v3+93OG+3H/2zhs/BRSS8KJqHemwfon1MUieAtw7QQtg4AH04cOAjQA2Br78nho" +
+ "cAC++ne8TiM55rjWgIJiod1phC4AFAPnHKHcIkYrSt5XXf/75WPB8P0DKEQ9vKv09HlXeAqDopQLPUVR1RwMAVnAAh6HzjgD100XvLbFnH7O4Y4lRKjjoSl48mtqmjwApuRGIeRxr2Bs4Xn9gZjieDdIWDef1I8Cvpx+MvCgpHt++9IuSsTA" +
+ "smctOHOL0q8sAGjthHJq6N85u1a/gNIELjJlMfkyEI5x+7C4kfncNwMxmfQSnKbx5iEMFRAguTl/3FhM1cgDT5Vocp1tcnPdB+LSfSzZJawAW32t/9xOnDDtBadtPagAjTJ2Xukp+CiAAYAxAvs0ary4FTwMNAMDWeZ26pg6gJbgDAOoUaA4" +
+ "0ABcuHwEYo42D5VTj7LXx9ZNhtHy4ByIglBpwLookkLE3zlAvpMAplZGUa1sAVlZW/9IfAQYAcEOjn2AeGLwAAAAASUVORK5CYII=";
+
+
+
+function on_data(json) {
+
+
+ //Build the first row of the table holding the term label
+ var local_label = json.response.docs[0].label;
+
+ html_to_inject = "<div class=\"tbl_container\">"
+ + "<div role=\"main\">"
+ + "<table class=\"mCustomScrollbar\" data-mcs-theme=\"dark\">"
+ + "<thead>"
+ + "<tr>"
+ + "<th scope=\"row\">"
+ + local_label
+ + "<a class=\"hideAll\"><img width=\"20\" height=\"20\" title=\"\" alt=\"\" src=\"" + minus_png + "\"></a>"
+ + "<a class=\"showAll\"><img width=\"20\" height=\"20\" title=\"\" alt=\"\" src=\"" + plus_png + "\"></a>"
+ + "</th>"
+ + "<td>"
+ + "<tr>"
+ + "</thead>"
+ + "<tbody>";
+
+ //Build the second row holding the term description
+ if (json.response.docs[0].description) {
+ html_to_inject = html_to_inject + build_html("description", json.response.docs[0].description);
+ }
+ //Build the third row holding the term external_definition_annotation
+ if (json.response.docs[0].external_definition_annotation) {
+ html_to_inject = html_to_inject + build_html("external_definition_annotation", json.response.docs[0].external_definition_annotation);
+ }
+ //Build all the other row of the table filling with the field from the json file in the order they come (do not re-add label, description or external_definition_annotation)
+ jQuery.each(json.response.docs[0], function (key, val) {
+ if (key != "label" && key != "description" && key != "external_definition_annotation") {
+ html_to_inject = html_to_inject + build_html(key, val);
+ }
+ });
+
+ //Close the table
+ html_to_inject = html_to_inject
+ + "</tbody>"
+ + "</table>"
+ + "</div>"
+
+ + "</div>";
+
+ //Inject the html in the <term-overview> tag
+ //this.append(html_to_inject);
+ element_to_inject.append(html_to_inject);
+ //jQuery(".term-overview").append(html_to_inject);
+
+ //attach the on click hide behaviour to all the tag of class .hide.
+ //For example, the tag <a target="description" class="hide"> will be listening for any click event because it is
+ //of class "hide". If the click event occurs then all the tag with id equal to "description" will be hidden.
+ jQuery(".hide").click(function () {
+ $('#' + $(this).attr('target')).hide();
+ });
+ //attach the on click show behaviour to all the tag of class .show.
+ //For example, the tag <a target="description" class="show"> will be listening for any click event because it is
+ //of class "show". If the click event occurs then all the tag with id equal to "description" will be shown.
+ jQuery(".show").click(function () {
+ $('#' + $(this).attr('target')).show();
+ });
+
+ //attach an on click behaviour to all the tag of class .hideAll.
+ //For example, the tag <a class="showAll"> will be listening for any click event. If a click event occurs it will
+ //hide all the element of class .hideOrShow (ex : <description id="description" class="hideOrShow>hello</description>)
+ jQuery(".hideAll").click(function () {
+ $('.hideOrShow').hide();
+ });
+
+ //attach an on click behaviour to all the tag of class .showAll.
+ //For example, the tag <a class="showAll"> will be listening for any click event. If a click event occurs it will
+ //show all the elements of class .hideOrShow (ex : <description id="description" class="hideOrShow>hello</description>)
+ jQuery(".showAll").click(function () {
+ $('.hideOrShow').show();
+ });
+
+ //By default when first loading the page we want to make the table as small as possible so all the tag of class hideOrShow
+ // are hidden.
+ jQuery('.hideOrShow').hide();
+
+}
+
+
+
+
+//Given a key (ex : synonym) and a value (ex : pulmo), it builds the html for an additional row for the term overview table and returns it.
+function build_html(key, val) {
+ //By default we only display the x first letters of any of the field in the table, if the user wants to see the entire field he can click on the plus png image
+ //If the user wants to hide it again he can click on the minus png image. The length of the string displayed by default is hard-coded in the show_length parameter
+ //below.
+ var show_length = 150;
+ val = val.toString();
+ val = val.toString();
+ val = val.replace(/,/g, ', ');
+
+ //In the first cell of the row, add the key as the row title
+ var local_html_to_inject = "<tr>"
+ + "<th scope=\"row\">" + key + "</th>";
+
+ //In the second cell of the row add the value.
+ //If the value length is shorter then show_length then just display it all.
+ if (val.length < show_length) {
+ local_html_to_inject = local_html_to_inject
+ + "<td>"
+ + val
+ + "</td>"
+ + "</tr>";
+ //If the value length is longer then show_length then put the first part of the string normally inside the cell but
+ // but add the end of the string in a tag of class "hideOrShow" that can be hidden or shown later.
+ } else {
+ local_html_to_inject = local_html_to_inject
+ + "<td>"
+ + val.substring(0, show_length)
+ + "<" + key + " id=\"" + key + "\" class=\"hideOrShow\">"
+ + val.substring(show_length, val.length)
+ + "</" + key + ">"
+ + "<a target=\"" + key + "\" class=\"hide\"><img width=\"20\" height=\"20\" title=\"\" alt=\"\" src=\"" + minus_png + "\"></a>"
+ + "<a target=\"" + key + "\" class=\"show\"><img width=\"20\" height=\"20\" title=\"\" alt=\"\" src=\"" + plus_png + "\"></a>"
+ + "</td>"
+ + "</tr>";
+ }
+
+ return local_html_to_inject;
+}
+
diff --git a/ols-web/pom.xml b/ols-web/pom.xml
index 437511ee..abcdf471 100644
--- a/ols-web/pom.xml
+++ b/ols-web/pom.xml
@@ -1,45 +1,42 @@
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
- xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
- xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
- <parent>
- <artifactId>ols-ebi</artifactId>
- <groupId>uk.ac.ebi.ols</groupId>
- <version>3.0-SNAPSHOT</version>
- </parent>
- <modelVersion>4.0.0</modelVersion>
+ xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+ xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+ <parent>
+ <groupId>uk.ac.ebi.spot</groupId>
+ <artifactId>ols-parent</artifactId>
+ <version>3.0.0-SNAPSHOT</version>
+ <relativePath>../ols-parent/pom.xml</relativePath>
+ </parent>
+ <modelVersion>4.0.0</modelVersion>
- <artifactId>ols-web</artifactId>
+ <artifactId>ols-web</artifactId>
- <dependencies>
- <dependency>
- <groupId>org.springframework.boot</groupId>
- <artifactId>spring-boot-starter-web</artifactId>
- <version>1.2.0.RELEASE</version>
- </dependency>
- <dependency>
- <groupId>org.springframework.boot</groupId>
- <artifactId>spring-boot-starter-thymeleaf</artifactId>
- <version>1.2.0.RELEASE</version>
- </dependency>
- <dependency>
- <groupId>org.springframework.boot</groupId>
- <artifactId>spring-boot-starter-actuator</artifactId>
- <version>1.2.0.RELEASE</version>
- </dependency>
- <dependency>
- <groupId>org.springframework.boot</groupId>
- <artifactId>spring-boot-starter-test</artifactId>
- <version>1.2.0.RELEASE</version>
- <scope>test</scope>
- </dependency>
- </dependencies>
+ <dependencies>
+ <dependency>
+ <groupId>org.springframework.boot</groupId>
+ <artifactId>spring-boot-starter-web</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework.boot</groupId>
+ <artifactId>spring-boot-starter-thymeleaf</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework.boot</groupId>
+ <artifactId>spring-boot-starter-actuator</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework.boot</groupId>
+ <artifactId>spring-boot-starter-test</artifactId>
+ <scope>test</scope>
+ </dependency>
+ </dependencies>
- <properties>
- <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
- <start-class>uk.ac.ebi.spot.goci.SearchApplication</start-class>
- <java.version>1.8</java.version>
- </properties>
+ <!--<properties>-->
+ <!--<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>-->
+ <!--<start-class>uk.ac.ebi.spot.spot.goci.SearchApplication</start-class>-->
+ <!--<java.version>1.8</java.version>-->
+ <!--</properties>-->
</project>
\ No newline at end of file
diff --git a/ols-web/src/main/java/uk/ac/ebi/spot/OLSApplication.java b/ols-web/src/main/java/uk/ac/ebi/spot/ols/OLSApplication.java
similarity index 77%
rename from ols-web/src/main/java/uk/ac/ebi/spot/OLSApplication.java
rename to ols-web/src/main/java/uk/ac/ebi/spot/ols/OLSApplication.java
index 8e5df131..5d8fe091 100644
--- a/ols-web/src/main/java/uk/ac/ebi/spot/OLSApplication.java
+++ b/ols-web/src/main/java/uk/ac/ebi/spot/ols/OLSApplication.java
@@ -1,4 +1,4 @@
-package uk.ac.ebi.spot;
+package uk.ac.ebi.spot.ols;
import org.springframework.boot.SpringApplication;
import org.springframework.boot.autoconfigure.SpringBootApplication;
@@ -11,7 +11,7 @@
@SpringBootApplication
public class OLSApplication {
public static void main(String[] args) {
- SpringApplication.run(uk.ac.ebi.spot.OLSApplication.class, args);
+ SpringApplication.run(OLSApplication.class, args);
}
}
diff --git a/ols-web/src/main/java/uk/ac/ebi/spot/ui/controller/OntologySuggestController.java b/ols-web/src/main/java/uk/ac/ebi/spot/ols/ui/controller/OntologySuggestController.java
similarity index 88%
rename from ols-web/src/main/java/uk/ac/ebi/spot/ui/controller/OntologySuggestController.java
rename to ols-web/src/main/java/uk/ac/ebi/spot/ols/ui/controller/OntologySuggestController.java
index b981a6a5..6c0f0827 100644
--- a/ols-web/src/main/java/uk/ac/ebi/spot/ui/controller/OntologySuggestController.java
+++ b/ols-web/src/main/java/uk/ac/ebi/spot/ols/ui/controller/OntologySuggestController.java
@@ -1,4 +1,4 @@
-package uk.ac.ebi.spot.ui.controller;
+package uk.ac.ebi.spot.ols.ui.controller;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
diff --git a/ontology-tools/pom.xml b/ontology-tools/pom.xml
index 8d71ca05..fef04904 100644
--- a/ontology-tools/pom.xml
+++ b/ontology-tools/pom.xml
@@ -3,28 +3,30 @@
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<parent>
- <artifactId>ols-ebi</artifactId>
- <groupId>uk.ac.ebi.ols</groupId>
- <version>3.0-SNAPSHOT</version>
+ <groupId>uk.ac.ebi.spot</groupId>
+ <artifactId>ols-parent</artifactId>
+ <version>3.0.0-SNAPSHOT</version>
+ <relativePath>../ols-parent/pom.xml</relativePath>
</parent>
<modelVersion>4.0.0</modelVersion>
<artifactId>ontology-tools</artifactId>
<dependencies>
+
+ <dependency>
+ <groupId>org.slf4j</groupId>
+ <artifactId>slf4j-api</artifactId>
+ </dependency>
+
<dependency>
<groupId>net.sourceforge.owlapi</groupId>
<artifactId>owlapi-distribution</artifactId>
- <!--todo: inherit version from ols dependencies-->
- <version>3.4.10</version>
</dependency>
<dependency>
<groupId>com.hermit-reasoner</groupId>
<artifactId>org.semanticweb.hermit</artifactId>
- <!--todo: inherit version from ols dependencies-->
-
- <version>1.3.8.4</version>
</dependency>
<dependency>
@@ -34,10 +36,20 @@
</dependency>
<dependency>
- <groupId>org.springframework.boot</groupId>
- <artifactId>spring-boot</artifactId>
- <version>1.2.0.RELEASE</version>
+ <groupId>com.fasterxml.jackson.core</groupId>
+ <artifactId>jackson-core</artifactId>
+ </dependency>
+
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-core</artifactId>
+ </dependency>
+
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-context</artifactId>
</dependency>
+
</dependencies>
</project>
\ No newline at end of file
diff --git a/ontology-tools/src/main/java/uk/ac/ebi/spot/config/OntologyDefaults.java b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/config/OntologyDefaults.java
similarity index 89%
rename from ontology-tools/src/main/java/uk/ac/ebi/spot/config/OntologyDefaults.java
rename to ontology-tools/src/main/java/uk/ac/ebi/spot/ols/config/OntologyDefaults.java
index ba4bb985..767a3b09 100644
--- a/ontology-tools/src/main/java/uk/ac/ebi/spot/config/OntologyDefaults.java
+++ b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/config/OntologyDefaults.java
@@ -1,4 +1,4 @@
-package uk.ac.ebi.spot.config;
+package uk.ac.ebi.spot.ols.config;
/**
* @author Simon Jupp
diff --git a/ontology-tools/src/main/java/uk/ac/ebi/spot/config/OntologyResourceConfig.java b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/config/OntologyResourceConfig.java
similarity index 98%
rename from ontology-tools/src/main/java/uk/ac/ebi/spot/config/OntologyResourceConfig.java
rename to ontology-tools/src/main/java/uk/ac/ebi/spot/ols/config/OntologyResourceConfig.java
index 5714842d..09c795c1 100644
--- a/ontology-tools/src/main/java/uk/ac/ebi/spot/config/OntologyResourceConfig.java
+++ b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/config/OntologyResourceConfig.java
@@ -1,7 +1,7 @@
-package uk.ac.ebi.spot.config;
+package uk.ac.ebi.spot.ols.config;
-import uk.ac.ebi.spot.util.DLExpressivity;
+import uk.ac.ebi.spot.ols.util.DLExpressivity;
import java.net.URI;
import java.util.Collection;
diff --git a/ontology-tools/src/main/java/uk/ac/ebi/spot/config/PropertyBasedLoadingService.java b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/config/PropertyBasedLoadingService.java
similarity index 90%
rename from ontology-tools/src/main/java/uk/ac/ebi/spot/config/PropertyBasedLoadingService.java
rename to ontology-tools/src/main/java/uk/ac/ebi/spot/ols/config/PropertyBasedLoadingService.java
index 9d2dfa55..254b0dd4 100644
--- a/ontology-tools/src/main/java/uk/ac/ebi/spot/config/PropertyBasedLoadingService.java
+++ b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/config/PropertyBasedLoadingService.java
@@ -1,16 +1,11 @@
-package uk.ac.ebi.spot.config;
+package uk.ac.ebi.spot.ols.config;
-import org.semanticweb.owlapi.model.IRI;
-import org.semanticweb.owlapi.model.OWLOntologyCreationException;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.beans.factory.annotation.Value;
-import org.springframework.boot.context.properties.ConfigurationProperties;
-import org.springframework.context.annotation.Bean;
import org.springframework.core.env.Environment;
import org.springframework.stereotype.Component;
-import uk.ac.ebi.spot.exception.OntologyLoadingException;
-import uk.ac.ebi.spot.loader.*;
-import uk.ac.ebi.spot.util.TermType;
+import uk.ac.ebi.spot.ols.exception.OntologyLoadingException;
+import uk.ac.ebi.spot.ols.loader.*;
import java.net.URI;
import java.util.Collection;
diff --git a/ontology-tools/src/main/java/uk/ac/ebi/spot/exception/OntologyLoadingException.java b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/exception/OntologyLoadingException.java
similarity index 95%
rename from ontology-tools/src/main/java/uk/ac/ebi/spot/exception/OntologyLoadingException.java
rename to ontology-tools/src/main/java/uk/ac/ebi/spot/ols/exception/OntologyLoadingException.java
index 2d2c2b15..fa624f40 100644
--- a/ontology-tools/src/main/java/uk/ac/ebi/spot/exception/OntologyLoadingException.java
+++ b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/exception/OntologyLoadingException.java
@@ -1,4 +1,4 @@
-package uk.ac.ebi.spot.exception;
+package uk.ac.ebi.spot.ols.exception;
/**
* @author Simon Jupp
diff --git a/ontology-tools/src/main/java/uk/ac/ebi/spot/loader/AbstractOWLOntologyLoader.java b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/AbstractOWLOntologyLoader.java
similarity index 97%
rename from ontology-tools/src/main/java/uk/ac/ebi/spot/loader/AbstractOWLOntologyLoader.java
rename to ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/AbstractOWLOntologyLoader.java
index aee6c405..c7a5f614 100644
--- a/ontology-tools/src/main/java/uk/ac/ebi/spot/loader/AbstractOWLOntologyLoader.java
+++ b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/AbstractOWLOntologyLoader.java
@@ -1,4 +1,4 @@
-package uk.ac.ebi.spot.loader;
+package uk.ac.ebi.spot.ols.loader;
import org.semanticweb.owlapi.apibinding.OWLManager;
import org.semanticweb.owlapi.model.*;
@@ -9,15 +9,13 @@
import org.springframework.core.io.Resource;
import org.springframework.core.io.UrlResource;
import org.springframework.util.StringUtils;
-import uk.ac.ebi.spot.config.OntologyResourceConfig;
-import uk.ac.ebi.spot.exception.OntologyLoadingException;
-import uk.ac.ebi.spot.util.Initializable;
-import uk.ac.ebi.spot.util.Namespaces;
+import uk.ac.ebi.spot.ols.config.OntologyResourceConfig;
+import uk.ac.ebi.spot.ols.exception.OntologyLoadingException;
+import uk.ac.ebi.spot.ols.util.Namespaces;
+import uk.ac.ebi.spot.ols.util.Initializable;
import uk.ac.manchester.cs.owl.owlapi.mansyntaxrenderer.ManchesterOWLSyntaxOWLObjectRendererImpl;
-import uk.ac.manchester.cs.owl.owlapi.mansyntaxrenderer.ManchesterOWLSyntaxRenderer;
import java.net.MalformedURLException;
-import java.net.URI;
import java.util.*;
import java.util.concurrent.Callable;
import java.util.regex.Matcher;
@@ -265,6 +263,7 @@ public void visit(OWLClass cls) {
classes.add(cls.getIRI());
indexSubclassRelations(cls);
indexEquivalentRelations(cls);
+
} catch (OWLOntologyCreationException e) {
getLog().error("unable to index classes, unable to create reasoner");
}
@@ -528,9 +527,7 @@ else if (propertyIRI.equals(Namespaces.OWL.createIRI("deprecated"))) {
}
if (!termAnnotations.get(owlEntityIRI).containsKey(propertyIRI)) {
- HashMap<IRI, Collection<String>> newMap = new HashMap<>();
- newMap.put(propertyIRI, new HashSet<>());
- termAnnotations.put(owlEntityIRI, newMap);
+ termAnnotations.get(owlEntityIRI).put(propertyIRI, new HashSet<>());
}
termAnnotations.get(owlEntityIRI).get(propertyIRI).add(getOWLAnnotationValueAsString(annotation.getValue()).get());
@@ -602,6 +599,8 @@ protected void addRelatedTerms(IRI termIRI, Map<IRI, Collection<IRI>> relatedTer
protected void addAllRelatedTerms(IRI termIRI, Map<IRI, Collection<IRI>> relatedTerms) {
this.allRelatedTerms.put(termIRI, relatedTerms);
}
+
+
protected void addSuperClassDescriptions(IRI termIRI, Set<String> relatedSuperDescriptions) {
this.superclassExpressionsAsString.put(termIRI, relatedSuperDescriptions);
}
@@ -627,6 +626,15 @@ public Map<IRI, Collection<IRI>> getDirectParentTerms() {
return directParentTerms;
}
+ @Override
+ public Collection<IRI> getDirectParentTerms(IRI iri) {
+ Collection<IRI> parentTerms = directParentTerms.get(iri);
+ if(parentTerms == null){
+ return new ArrayList<IRI>();
+ }
+ return parentTerms;
+ }
+
@Override
public Map<IRI, Collection<IRI>> getAllParentTerms() {
return allParentTerms;
@@ -637,6 +645,15 @@ public Map<IRI, Collection<IRI>> getDirectChildTerms() {
return directChildTerms;
}
+ @Override
+ public Collection<IRI> getDirectChildTerms(IRI iri) {
+ Collection<IRI> childTerms = directChildTerms.get(iri);
+ if(childTerms == null){
+ return new ArrayList<IRI>();
+ }
+ return directChildTerms.get(iri);
+ }
+
@Override
public Map<IRI, Collection<IRI>> getAllChildTerms() {
return allChildTerms;
diff --git a/ontology-tools/src/main/java/uk/ac/ebi/spot/loader/DocumentLoadingService.java b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/DocumentLoadingService.java
similarity index 77%
rename from ontology-tools/src/main/java/uk/ac/ebi/spot/loader/DocumentLoadingService.java
rename to ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/DocumentLoadingService.java
index 870320fe..5226c3ca 100644
--- a/ontology-tools/src/main/java/uk/ac/ebi/spot/loader/DocumentLoadingService.java
+++ b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/DocumentLoadingService.java
@@ -1,7 +1,6 @@
-package uk.ac.ebi.spot.loader;
+package uk.ac.ebi.spot.ols.loader;
-import uk.ac.ebi.spot.exception.OntologyLoadingException;
-import uk.ac.ebi.spot.loader.OntologyLoader;
+import uk.ac.ebi.spot.ols.exception.OntologyLoadingException;
/**
* @author Simon Jupp
diff --git a/ontology-tools/src/main/java/uk/ac/ebi/spot/loader/ELKOWLOntologyLoader.java b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/ELKOWLOntologyLoader.java
similarity index 95%
rename from ontology-tools/src/main/java/uk/ac/ebi/spot/loader/ELKOWLOntologyLoader.java
rename to ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/ELKOWLOntologyLoader.java
index db7db91f..e01c1693 100644
--- a/ontology-tools/src/main/java/uk/ac/ebi/spot/loader/ELKOWLOntologyLoader.java
+++ b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/ELKOWLOntologyLoader.java
@@ -1,11 +1,11 @@
-package uk.ac.ebi.spot.loader;
+package uk.ac.ebi.spot.ols.loader;
import org.semanticweb.elk.owlapi.ElkReasonerFactory;
import org.semanticweb.owlapi.model.*;
import org.semanticweb.owlapi.reasoner.*;
import org.slf4j.Logger;
-import uk.ac.ebi.spot.config.OntologyResourceConfig;
-import uk.ac.ebi.spot.exception.OntologyLoadingException;
+import uk.ac.ebi.spot.ols.config.OntologyResourceConfig;
+import uk.ac.ebi.spot.ols.exception.OntologyLoadingException;
/**
diff --git a/ontology-tools/src/main/java/uk/ac/ebi/spot/loader/HermitOWLOntologyLoader.java b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/HermitOWLOntologyLoader.java
similarity index 95%
rename from ontology-tools/src/main/java/uk/ac/ebi/spot/loader/HermitOWLOntologyLoader.java
rename to ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/HermitOWLOntologyLoader.java
index a08bbd9a..a05f3e56 100644
--- a/ontology-tools/src/main/java/uk/ac/ebi/spot/loader/HermitOWLOntologyLoader.java
+++ b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/HermitOWLOntologyLoader.java
@@ -1,11 +1,11 @@
-package uk.ac.ebi.spot.loader;
+package uk.ac.ebi.spot.ols.loader;
import org.semanticweb.HermiT.Reasoner;
import org.semanticweb.owlapi.model.*;
import org.semanticweb.owlapi.reasoner.*;
import org.slf4j.Logger;
-import uk.ac.ebi.spot.config.OntologyResourceConfig;
-import uk.ac.ebi.spot.exception.OntologyLoadingException;
+import uk.ac.ebi.spot.ols.config.OntologyResourceConfig;
+import uk.ac.ebi.spot.ols.exception.OntologyLoadingException;
/**
* Loads an ontology using the OWLAPI and a HermiT reasoner to classify the ontology. This allows for richer typing
@@ -49,7 +49,6 @@ protected OWLReasoner getOWLReasoner(OWLOntology ontology) throws OWLOntologyCre
return reasoner;
}
-
protected class LoggingReasonerProgressMonitor implements ReasonerProgressMonitor {
private final Logger log;
private int lastPercent = 0;
diff --git a/ontology-tools/src/main/java/uk/ac/ebi/spot/loader/OBOLoader.java b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/OBOLoader.java
similarity index 78%
rename from ontology-tools/src/main/java/uk/ac/ebi/spot/loader/OBOLoader.java
rename to ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/OBOLoader.java
index 47362c3e..f64646d5 100644
--- a/ontology-tools/src/main/java/uk/ac/ebi/spot/loader/OBOLoader.java
+++ b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/OBOLoader.java
@@ -1,4 +1,4 @@
-package uk.ac.ebi.spot.loader;
+package uk.ac.ebi.spot.ols.loader;
/**
* @author Simon Jupp
diff --git a/ontology-tools/src/main/java/uk/ac/ebi/spot/loader/OntologyLoader.java b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/OntologyLoader.java
similarity index 95%
rename from ontology-tools/src/main/java/uk/ac/ebi/spot/loader/OntologyLoader.java
rename to ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/OntologyLoader.java
index 5effb39a..c96c5a49 100644
--- a/ontology-tools/src/main/java/uk/ac/ebi/spot/loader/OntologyLoader.java
+++ b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/OntologyLoader.java
@@ -1,4 +1,4 @@
-package uk.ac.ebi.spot.loader;
+package uk.ac.ebi.spot.ols.loader;
/**
* @author Simon Jupp
@@ -7,13 +7,10 @@
*/
import org.semanticweb.owlapi.model.IRI;
-import org.semanticweb.owlapi.model.OWLOntology;
import org.springframework.core.io.Resource;
-import java.net.URI;
import java.util.Collection;
import java.util.Map;
-import java.util.Set;
/**
* An ontology loader that provides some abstraction around core concepts in ontologies. We essentially
@@ -63,7 +60,7 @@ public interface OntologyLoader {
*/
String getOntologyName();
- Collection<IRI> getAllClasses();
+ Collection<IRI> getAllClasses();
Collection<IRI> getAllObjectPropertyIRIs();
Collection<IRI> getAllDataPropertyIRIs();
Collection<IRI> getAllIndividualIRIs();
@@ -103,8 +100,13 @@ public interface OntologyLoader {
Map<IRI, Collection<String>> getTermDefinitions();
Map<IRI, Collection<IRI>> getDirectParentTerms();
+ Collection<IRI> getDirectParentTerms(IRI iri);
Map<IRI, Collection<IRI>> getAllParentTerms();
+
+
+
Map<IRI, Collection<IRI>> getDirectChildTerms();
+ Collection<IRI> getDirectChildTerms(IRI iri);
Map<IRI, Collection<IRI>> getAllChildTerms();
Map<IRI, Collection<String>> getLogicalSuperClassDescriptions();
@@ -122,6 +124,7 @@ public interface OntologyLoader {
* @return the relationship IRI and the set of related terms
*/
Map<IRI, Collection<IRI>> getAllRelatedTerms(IRI entityIRI);
+
Map<IRI, Collection<IRI>> getRelatedTerms(IRI entityIRI);
diff --git a/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/OntologyLoaderFactory.java b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/OntologyLoaderFactory.java
new file mode 100644
index 00000000..478f5f63
--- /dev/null
+++ b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/OntologyLoaderFactory.java
@@ -0,0 +1,24 @@
+package uk.ac.ebi.spot.ols.loader;
+
+import uk.ac.ebi.spot.ols.config.OntologyResourceConfig;
+import uk.ac.ebi.spot.ols.exception.OntologyLoadingException;
+
+/**
+ * @author Simon Jupp
+ * @date 04/03/2015
+ * Samples, Phenotypes and Ontologies Team, EMBL-EBI
+ */
+public class OntologyLoaderFactory {
+
+ public static OntologyLoader getLoader(OntologyResourceConfig config) throws OntologyLoadingException {
+ if (config.isClassify()) {
+ return new HermitOWLOntologyLoader(config);
+ }
+ else if (config.isSkos()) {
+ return new SKOSLoader(config);
+ }
+ else {
+ return new ELKOWLOntologyLoader(config);
+ }
+ }
+}
diff --git a/ontology-tools/src/main/java/uk/ac/ebi/spot/loader/SKOSLoader.java b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/SKOSLoader.java
similarity index 61%
rename from ontology-tools/src/main/java/uk/ac/ebi/spot/loader/SKOSLoader.java
rename to ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/SKOSLoader.java
index 90e81d74..6ce7dfe4 100644
--- a/ontology-tools/src/main/java/uk/ac/ebi/spot/loader/SKOSLoader.java
+++ b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/loader/SKOSLoader.java
@@ -1,12 +1,9 @@
-package uk.ac.ebi.spot.loader;
+package uk.ac.ebi.spot.ols.loader;
-import org.semanticweb.owlapi.model.OWLAxiom;
import org.semanticweb.owlapi.model.OWLOntology;
-import org.semanticweb.owlapi.model.OWLOntologyCreationException;
import org.semanticweb.owlapi.reasoner.OWLReasoner;
-import uk.ac.ebi.spot.config.OntologyResourceConfig;
-import uk.ac.ebi.spot.exception.OntologyLoadingException;
-import uk.ac.ebi.spot.loader.AbstractOWLOntologyLoader;
+import uk.ac.ebi.spot.ols.config.OntologyResourceConfig;
+import uk.ac.ebi.spot.ols.exception.OntologyLoadingException;
/**
* @author Simon Jupp
diff --git a/ontology-tools/src/main/java/uk/ac/ebi/spot/util/DLExpressivity.java b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/util/DLExpressivity.java
similarity index 79%
rename from ontology-tools/src/main/java/uk/ac/ebi/spot/util/DLExpressivity.java
rename to ontology-tools/src/main/java/uk/ac/ebi/spot/ols/util/DLExpressivity.java
index b8132a1a..2675e2df 100644
--- a/ontology-tools/src/main/java/uk/ac/ebi/spot/util/DLExpressivity.java
+++ b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/util/DLExpressivity.java
@@ -1,6 +1,4 @@
-package uk.ac.ebi.spot.util;
-
-import org.omg.CORBA.UNKNOWN;
+package uk.ac.ebi.spot.ols.util;
/**
* @author Simon Jupp
diff --git a/ontology-tools/src/main/java/uk/ac/ebi/spot/util/Initializable.java b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/util/Initializable.java
similarity index 99%
rename from ontology-tools/src/main/java/uk/ac/ebi/spot/util/Initializable.java
rename to ontology-tools/src/main/java/uk/ac/ebi/spot/ols/util/Initializable.java
index 750b9944..beb55855 100644
--- a/ontology-tools/src/main/java/uk/ac/ebi/spot/util/Initializable.java
+++ b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/util/Initializable.java
@@ -1,4 +1,4 @@
-package uk.ac.ebi.spot.util;
+package uk.ac.ebi.spot.ols.util;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
diff --git a/ontology-tools/src/main/java/uk/ac/ebi/spot/util/Namespaces.java b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/util/Namespaces.java
similarity index 96%
rename from ontology-tools/src/main/java/uk/ac/ebi/spot/util/Namespaces.java
rename to ontology-tools/src/main/java/uk/ac/ebi/spot/ols/util/Namespaces.java
index 1ff75749..09d59abd 100644
--- a/ontology-tools/src/main/java/uk/ac/ebi/spot/util/Namespaces.java
+++ b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/util/Namespaces.java
@@ -1,9 +1,7 @@
-package uk.ac.ebi.spot.util;
+package uk.ac.ebi.spot.ols.util;
import org.semanticweb.owlapi.model.IRI;
-import java.net.URI;
-
/**
* @author Simon Jupp
* @date 04/02/2015
diff --git a/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/util/SiblingGraphCreator.java b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/util/SiblingGraphCreator.java
new file mode 100644
index 00000000..dbb75bdb
--- /dev/null
+++ b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/util/SiblingGraphCreator.java
@@ -0,0 +1,249 @@
+package uk.ac.ebi.spot.ols.util;
+
+import com.fasterxml.jackson.core.JsonFactory;
+import com.fasterxml.jackson.core.JsonGenerator;
+import org.semanticweb.owlapi.model.IRI;
+import uk.ac.ebi.spot.ols.exception.OntologyLoadingException;
+import uk.ac.ebi.spot.ols.loader.OntologyLoader;
+
+import java.io.*;
+import java.util.Collection;
+
+/**
+ * Created by catherineleroy on 16/03/2015.<br>
+ *<br>
+ * This class contains the utility method to create for term a bbob json graph describing the tree with all the siblings,
+ * parents, parent's sibling of this term.<br>
+ * To find out more about bbop graph :<br>
+ * https://github.com/berkeleybop/bbop-js/wiki/Graph<br>
+ *<br>
+ * This is an example of a bbpop graph : <br>
+ * <br>
+ * {<br>
+ * "nodes": [<br>
+ * {<br>
+ * "id": "GO:0043474",<br>
+ * "lbl": "pigment metabolic process involved in pigmentation"<br>
+ * },<br>
+ * {<br>
+ * "id": "GO:0043475",<br>
+ * "lbl": "pigment metabolic process involved in pigment accumulation"<br>
+ * }<br>
+ * ],<br>
+ * "edges": [<br>
+ * {<br>
+ * "sub": "GO:0043475",<br>
+ * "obj": "GO:0043474",<br>
+ * "pred": "is_a"<br>
+ * }<br>
+ * ]<br>
+ * }<br>
+ *<br>
+ */
+public class SiblingGraphCreator {
+
+ /**
+ * Build the bbop graph containing all the parents, sibling, sibling parents, describing how those relate and
+ * flush it to the given OutputStream.<br>
+ *<br>
+ * @param loader - an ontology loader for the ontology your interested in<br>
+ * @param classTerm - the IRI of the term for which you want to build the sibbling graph<br>
+ * @param out - an OutputStream in which the graph will be saved<br>
+ *<br>
+ * @throws IOException<br>
+ */
+ public void buildBpopGraph(OntologyLoader loader, IRI classTerm, OutputStream out) throws IOException {
+
+
+ JsonGenerator jsonGenerator = new JsonFactory().createGenerator(out);
+
+ //Start the json object
+ jsonGenerator.writeStartObject();
+
+ // Building the "nodes" section of the json file in which we describe all the nodes that will be represented
+ // in the graph.
+ jsonGenerator.writeArrayFieldStart("nodes");
+ jsonGenerator = addParentsNodes(classTerm, loader, jsonGenerator);
+ jsonGenerator.writeEndArray();
+
+ // Building the "edges" section of the json file in which we describe the relationship between the nodes previously
+ // described in the nodes section
+ jsonGenerator.writeArrayFieldStart("edges");
+ jsonGenerator = addParentsEdges(classTerm, loader, jsonGenerator);
+ jsonGenerator.writeEndArray();
+
+ //Close the json object
+ jsonGenerator.writeEndObject();
+
+ //Flush and close so that the json is written in the given OutputStream object
+ jsonGenerator.flush();
+ jsonGenerator.close();
+
+ return;
+ }
+
+
+ public JsonGenerator addChildrenNodes(IRI term, OntologyLoader loader, JsonGenerator jsonGenerator) throws IOException {
+
+ Collection<IRI> directChildren = loader.getDirectChildTerms(term);
+
+
+ for (IRI directChild : directChildren) {
+
+ jsonGenerator.writeStartObject();
+ jsonGenerator.writeStringField("IRI", directChild.toString());
+ jsonGenerator.writeEndObject();
+
+ jsonGenerator = addChildrenNodes(directChild, loader, jsonGenerator);
+ }
+
+
+ return jsonGenerator;
+
+ }
+
+
+ public JsonGenerator addChildrenEdges(IRI term, OntologyLoader loader, JsonGenerator jsonGenerator) throws IOException {
+
+ Collection<IRI> directChildren = loader.getDirectChildTerms(term);
+
+
+ for (IRI directChild : directChildren) {
+
+
+ jsonGenerator.writeStartObject();
+ jsonGenerator.writeStringField("pred", "is_a");
+ jsonGenerator.writeStringField("obj", directChild.toString());
+ jsonGenerator.writeStringField("sub", term.toString());
+ jsonGenerator.writeEndObject();
+
+ jsonGenerator = addChildrenEdges(directChild, loader, jsonGenerator);
+ }
+
+
+ return jsonGenerator;
+
+ }
+
+ /**
+ * Gets all the parents, siblings of the given term and using the jsonGenerator it adds a description
+ * of the nodes to the json as follow :<br>
+ * ex : {"IRI":"http://www.ebi.ac.uk/efo/EFO_0000510"},<br>
+ * {"IRI":"http://www.ebi.ac.uk/efo/EFO_0000506"},<br>
+ * {"IRI":"http://www.ebi.ac.uk/efo/EFO_0004020"},<br>
+ * {"IRI":"http://www.ebi.ac.uk/efo/EFO_0004021"},
+ * {"IRI":"http://www.ebi.ac.uk/efo/EFO_0004293"},<br>
+ * {"IRI":"http://www.ebi.ac.uk/efo/EFO_0004030"}<br>
+ * ... etc<br>
+ * This method is recursive so it will call itself on any found parent.<br>
+ * @param term - the IRI of the term for which you want to get all the parents and sibling nodes.<br>
+ * @param loader - an ontology loader for the ontology your interested in<br>
+ * @param jsonGenerator - a jsonGenerator object<br>
+ * @return<br>
+ * @throws IOException<br>
+ */
+ public JsonGenerator addParentsNodes(IRI term, OntologyLoader loader, JsonGenerator jsonGenerator) throws IOException {
+
+ Collection<IRI> directParents = loader.getDirectParentTerms(term);
+
+ //For each parent
+ for (IRI directParent : directParents) {
+ //add the node using the jsonGenerator object.
+ jsonGenerator.writeStartObject();
+ jsonGenerator.writeStringField("IRI", directParent.toString());
+ jsonGenerator.writeEndObject();
+
+ //get the sibbling of the given term and add them using the jsonGenerator object.
+ jsonGenerator = addSiblingNodes(directParent, term, loader, jsonGenerator);
+
+ //run recursively this method on the directParent
+ jsonGenerator = addParentsNodes(directParent, loader, jsonGenerator);
+ }
+
+ return jsonGenerator;
+
+ }
+
+ /**
+ * Gets all the parents,siblings of the given term and using the jsonGenerator it adds a description<br>
+ * of the nodes as follow to the json indicating the relationship between the nodes :<br>
+ * ex : {<br>
+ * "pred":"is_a",<br>
+ * "obj":"http://www.ebi.ac.uk/efo/EFO_0004019",<br>
+ * "sub":"http://www.ebi.ac.uk/efo/EFO_0000510"<br>
+ * },<br>
+ * {<br>
+ * "pred":"is_a",<br>
+ * "obj":"http://www.ebi.ac.uk/efo/EFO_0000506",<br>
+ * "sub":"http://www.ebi.ac.uk/efo/EFO_0000510"<br>
+ * },<br>
+ * {<br>
+ * "pred":"is_a",<br>
+ * "obj":"http://www.ebi.ac.uk/efo/EFO_0004020",<br>
+ * "sub":"http://www.ebi.ac.uk/efo/EFO_0000510"<br>
+ * }<br>
+ * ... etc<br>
+ * This method is recursive so it will call itself on any found parent.<br>
+ * @param term - the IRI of the term for which you want to get all the parents and sibling nodes.<br>
+ * @param loader - an ontology loader for the ontology your interested in<br>
+ * @param jsonGenerator - a jsonGenerator object<br>
+ * @return the jsonGenerator object
+ * @throws IOException
+ */
+ public JsonGenerator addParentsEdges(IRI term, OntologyLoader loader, JsonGenerator jsonGenerator) throws IOException {
+
+ Collection<IRI> directParents = loader.getDirectParentTerms(term);
+
+ for (IRI directParent : directParents) {
+ jsonGenerator.writeStartObject();
+ jsonGenerator.writeStringField("pred", "is_a");
+ jsonGenerator.writeStringField("obj", term.toString());
+ jsonGenerator.writeStringField("sub", directParent.toString());
+ jsonGenerator.writeEndObject();
+
+ jsonGenerator = addSiblingEdges(directParent, term, loader, jsonGenerator);
+
+ jsonGenerator = addParentsEdges(directParent, loader, jsonGenerator);
+ }
+
+
+ return jsonGenerator;
+
+ }
+
+ public JsonGenerator addSiblingNodes(IRI parent, IRI child, OntologyLoader loader, JsonGenerator jsonGenerator) throws IOException {
+
+ Collection<IRI> directChildren = loader.getDirectChildTerms(parent);
+
+
+ for (IRI directChild : directChildren) {
+ if (!directChild.equals(child)) {
+ jsonGenerator.writeStartObject();
+ jsonGenerator.writeStringField("IRI", directChild.toString());
+ jsonGenerator.writeEndObject();
+ }
+ }
+
+
+ return jsonGenerator;
+ }
+
+ public JsonGenerator addSiblingEdges(IRI parent, IRI child, OntologyLoader loader, JsonGenerator jsonGenerator) throws IOException {
+
+ Collection<IRI> directChildren = loader.getDirectChildTerms(parent);
+
+ for (IRI directChild : directChildren) {
+ if (!directChild.equals(child)) {
+ jsonGenerator.writeStartObject();
+ jsonGenerator.writeStringField("pred", "is_a");
+ jsonGenerator.writeStringField("obj", directChild.toString());
+ jsonGenerator.writeStringField("sub", parent.toString());
+ jsonGenerator.writeEndObject();
+ }
+ }
+
+
+ return jsonGenerator;
+ }
+
+}
\ No newline at end of file
diff --git a/ontology-tools/src/main/java/uk/ac/ebi/spot/util/TermType.java b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/util/TermType.java
similarity index 84%
rename from ontology-tools/src/main/java/uk/ac/ebi/spot/util/TermType.java
rename to ontology-tools/src/main/java/uk/ac/ebi/spot/ols/util/TermType.java
index 41661f1e..0025ac7d 100644
--- a/ontology-tools/src/main/java/uk/ac/ebi/spot/util/TermType.java
+++ b/ontology-tools/src/main/java/uk/ac/ebi/spot/ols/util/TermType.java
@@ -1,4 +1,4 @@
-package uk.ac.ebi.spot.util;
+package uk.ac.ebi.spot.ols.util;
/**
* @author Simon Jupp
diff --git a/ontology-tools/src/test/java/uk/ac/ebi/spot/OWLOntologyLoaderEFOTest.java b/ontology-tools/src/test/java/uk/ac/ebi/spot/ols/OWLOntologyLoaderEFOTest.java
similarity index 93%
rename from ontology-tools/src/test/java/uk/ac/ebi/spot/OWLOntologyLoaderEFOTest.java
rename to ontology-tools/src/test/java/uk/ac/ebi/spot/ols/OWLOntologyLoaderEFOTest.java
index 16c3f246..ab1c6e76 100644
--- a/ontology-tools/src/test/java/uk/ac/ebi/spot/OWLOntologyLoaderEFOTest.java
+++ b/ontology-tools/src/test/java/uk/ac/ebi/spot/ols/OWLOntologyLoaderEFOTest.java
@@ -1,10 +1,10 @@
-package uk.ac.ebi.spot;
+package uk.ac.ebi.spot.ols;
import org.semanticweb.owlapi.model.IRI;
-import uk.ac.ebi.spot.config.OntologyResourceConfig;
-import uk.ac.ebi.spot.exception.OntologyLoadingException;
-import uk.ac.ebi.spot.loader.HermitOWLOntologyLoader;
-import uk.ac.ebi.spot.loader.OntologyLoader;
+import uk.ac.ebi.spot.ols.config.OntologyResourceConfig;
+import uk.ac.ebi.spot.ols.exception.OntologyLoadingException;
+import uk.ac.ebi.spot.ols.loader.HermitOWLOntologyLoader;
+import uk.ac.ebi.spot.ols.loader.OntologyLoader;
import java.net.URI;
import java.util.Collection;
@@ -47,6 +47,7 @@ public static void main(String[] args) {
terms.addAll(loader.getAllObjectPropertyIRIs());
for (IRI iri: terms) {
+
System.out.println(iri + " -> label: " + loader.getTermLabels().get(iri));
for (String acc : loader.getAccessions(iri)) {
@@ -88,6 +89,7 @@ public static void main(String[] args) {
}
}
+
}
}
diff --git a/ontology-tools/src/test/java/uk/ac/ebi/spot/OWLOntologyLoaderTest.java b/ontology-tools/src/test/java/uk/ac/ebi/spot/ols/OWLOntologyLoaderTest.java
similarity index 89%
rename from ontology-tools/src/test/java/uk/ac/ebi/spot/OWLOntologyLoaderTest.java
rename to ontology-tools/src/test/java/uk/ac/ebi/spot/ols/OWLOntologyLoaderTest.java
index af6dca01..8f4e438c 100644
--- a/ontology-tools/src/test/java/uk/ac/ebi/spot/OWLOntologyLoaderTest.java
+++ b/ontology-tools/src/test/java/uk/ac/ebi/spot/ols/OWLOntologyLoaderTest.java
@@ -1,16 +1,14 @@
-package uk.ac.ebi.spot;
+package uk.ac.ebi.spot.ols;
import org.semanticweb.owlapi.model.IRI;
-import org.semanticweb.owlapi.model.OWLOntologyCreationException;
-import uk.ac.ebi.spot.config.OntologyResourceConfig;
-import uk.ac.ebi.spot.exception.OntologyLoadingException;
-import uk.ac.ebi.spot.loader.HermitOWLOntologyLoader;
-import uk.ac.ebi.spot.loader.OntologyLoader;
+import uk.ac.ebi.spot.ols.loader.OntologyLoader;
+import uk.ac.ebi.spot.ols.config.OntologyResourceConfig;
+import uk.ac.ebi.spot.ols.exception.OntologyLoadingException;
+import uk.ac.ebi.spot.ols.loader.HermitOWLOntologyLoader;
import java.net.URI;
import java.util.Collection;
import java.util.Collections;
-import java.util.Set;
/**
* @author Simon Jupp
diff --git a/ontology-tools/src/test/resources/catalog-v001.xml b/ontology-tools/src/test/resources/catalog-v001.xml
index 5cbe3cf2..f801e895 100644
--- a/ontology-tools/src/test/resources/catalog-v001.xml
+++ b/ontology-tools/src/test/resources/catalog-v001.xml
@@ -1,4 +1,6 @@
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
- <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base=""/>
+ <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
+ <uri id="Automatically generated entry, Timestamp=1430398791919" name="http://www.ebi.ac.uk/ols/test1.owl" uri="test1.owl"/>
+ </group>
</catalog>
diff --git a/ontology-tools/src/test/resources/test1.owl b/ontology-tools/src/test/resources/test1.owl
index bcacf4a1..b717ebd6 100644
--- a/ontology-tools/src/test/resources/test1.owl
+++ b/ontology-tools/src/test/resources/test1.owl
@@ -13,12 +13,12 @@
<rdf:RDF xmlns="http://www.ebi.ac.uk/ols/test1.owl#"
xml:base="http://www.ebi.ac.uk/ols/test1.owl"
- xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
- xmlns:test1="http://www.ebi.ac.uk/ols/test1.owl/"
- xmlns:efo="http://www.ebi.ac.uk/efo/"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
- xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
+ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+ xmlns:test1="http://www.ebi.ac.uk/ols/test1.owl/"
+ xmlns:efo="http://www.ebi.ac.uk/efo/">
<owl:Ontology rdf:about="http://www.ebi.ac.uk/ols/test1.owl"/>
@@ -31,23 +31,22 @@
///////////////////////////////////////////////////////////////////////////////////////
-->
- <owl:AnnotationProperty rdf:about="&test1;TEST_0000012">
- <rdfs:label xml:lang="en">definition</rdfs:label>
- </owl:AnnotationProperty>
+
+
+
+ <!-- http://www.ebi.ac.uk/ols/test1.owl/TEST_0000011 -->
+
<owl:AnnotationProperty rdf:about="&test1;TEST_0000011">
<rdfs:label xml:lang="en">altLabel</rdfs:label>
</owl:AnnotationProperty>
- <!--
- ///////////////////////////////////////////////////////////////////////////////////////
- //
- // Datatypes
- //
- ///////////////////////////////////////////////////////////////////////////////////////
- -->
+ <!-- http://www.ebi.ac.uk/ols/test1.owl/TEST_0000012 -->
+ <owl:AnnotationProperty rdf:about="&test1;TEST_0000012">
+ <rdfs:label xml:lang="en">definition</rdfs:label>
+ </owl:AnnotationProperty>
@@ -73,7 +72,7 @@
<!-- http://www.ebi.ac.uk/ols/test1.owl/TEST_0000010 -->
<owl:ObjectProperty rdf:about="&test1;TEST_0000010">
- <rdfs:label xml:lang="en">PARTOF</rdfs:label>
+ <rdfs:label xml:lang="en">part of</rdfs:label>
<rdfs:subPropertyOf rdf:resource="&test1;TEST_0000009"/>
</owl:ObjectProperty>
@@ -133,7 +132,7 @@
<!-- http://www.ebi.ac.uk/ols/test1.owl/TEST_0000003 -->
<owl:Class rdf:about="&test1;TEST_0000003">
- <rdfs:label xml:lang="en">C</rdfs:label>
+ <rdfs:label xml:lang="en">label with spaces</rdfs:label>
<rdfs:subClassOf rdf:resource="&test1;TEST_0000001"/>
</owl:Class>
@@ -185,5 +184,5 @@
-<!-- Generated by the OWL API (version 3.2.3.1824) http://owlapi.sourceforge.net -->
+<!-- Generated by the OWL API (version 3.4.2) http://owlapi.sourceforge.net -->
diff --git a/pom.xml b/pom.xml
index fc47089e..9f555c13 100644
--- a/pom.xml
+++ b/pom.xml
@@ -4,81 +4,19 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
- <groupId>uk.ac.ebi.ols</groupId>
+ <groupId>uk.ac.ebi.spot</groupId>
<artifactId>ols-ebi</artifactId>
<packaging>pom</packaging>
- <version>3.0-SNAPSHOT</version>
+ <version>3.0.0-SNAPSHOT</version>
<modules>
<module>ols-core</module>
<module>ols-solr</module>
<module>ontology-tools</module>
- <module>ols-mongo</module>
- <module>ols-web</module>
- <module>ols-loader</module>
+ <!--<module>ols-mongo</module>-->
+ <!--<module>ols-neo4j</module>-->
<module>ols-apps</module>
- <module>ols-interfaces</module>
- <module>ols-parent</module>
<module>ols-dependencies</module>
+ <module>ols-parent</module>
</modules>
- <properties>
- <org.slf4j.version>1.7.7</org.slf4j.version>
- </properties>
-
- <dependencies>
-
- <dependency>
- <groupId>org.slf4j</groupId>
- <artifactId>slf4j-api</artifactId>
- <version>${org.slf4j.version}</version>
- </dependency>
-
- <dependency>
- <groupId>org.slf4j</groupId>
- <artifactId>slf4j-log4j12</artifactId>
- <version>${org.slf4j.version}</version>
- <scope>test</scope>
- </dependency>
- <dependency>
- <groupId>log4j</groupId>
- <artifactId>log4j</artifactId>
- <version>1.2.16</version>
- <scope>test</scope>
- </dependency>
- <dependency>
- <groupId>org.springframework</groupId>
- <artifactId>spring-web</artifactId>
- <version>4.1.4.RELEASE</version>
- </dependency>
- <dependency>
- <groupId>org.apache.httpcomponents</groupId>
- <artifactId>httpcore</artifactId>
- <version>4.3.3</version>
- </dependency>
- <dependency>
- <groupId>org.apache.httpcomponents</groupId>
- <artifactId>httpclient</artifactId>
- <version>4.3.6</version>
- </dependency>
- <dependency>
- <groupId>javax.servlet</groupId>
- <artifactId>javax.servlet-api</artifactId>
- <version>3.0.1</version>
- </dependency>
-
- </dependencies>
-
- <build>
- <plugins>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-compiler-plugin</artifactId>
- <version>3.2</version>
- <configuration>
- <source>1.8</source>
- <target>1.8</target>
- </configuration>
- </plugin>
- </plugins>
- </build>
</project>
\ No newline at end of file