- All languages
- AMPL
- Assembly
- C
- C#
- C++
- CAP CDS
- CSS
- Common Workflow Language
- Cuda
- Cython
- D
- Dockerfile
- Eagle
- Go
- Groovy
- HTML
- HyPhy
- Java
- JavaScript
- Jupyter Notebook
- Logos
- M4
- MATLAB
- Makefile
- Nextflow
- Nim
- Objective-C
- OpenSCAD
- PHP
- Pep8
- Perl
- Prolog
- Pure Data
- Python
- R
- Raku
- Roff
- Ruby
- Rust
- Scala
- Shell
- Swift
- TeX
- TypeScript
- Vim Script
- Vue
- WDL
Starred repositories
Python bindings for the official Sketchup API
bwa-mem2 / mm2-fast
Forked from lh3/minimap2A versatile pairwise aligner for genomic and spliced nucleotide sequences
asl / BandageNG
Forked from rrwick/Bandagea Bioinformatics Application for Navigating De novo Assembly Graphs Easily
Gaius-Augustus / TSEBRA
Forked from LarsGab/TSEBRATSEBRA: Transcript Selector for BRAKER
tbenavi1 / genomescope2.0
Forked from schatzlab/genomescopeReference-free profiling of polyploid genomes
lbcb-sci / ScaRa
Forked from kkrizanovic/pyheraSCARA - scaffolding with long reads
MariaNattestad / dot
Forked from dsommer/dotDot: An interactive dot plot viewer for comparative genomics
MacOS system extension that allows applications to pass audio to other applications. Soundflower works on macOS Catalina.
tacorna / taco
Forked from yniknafs/tacoMulti-sample transcriptome assembly from RNA-Seq
MarginPolish: Graph based assembly polishing
lbcb-sci / ra
Forked from rvaser/raAssembler for raw de novo genome assembly of long uncorrected reads.
JGI-Bioinformatics / albacore
Forked from dvera/albacoreDockerfile for the Albacore basecaller from Oxford Nanopore
hdfeos / go-hdf5
Forked from sbinet/go-hdf5Go bindings to the HDF5 library
shenwei356 / memusg
Forked from drewkett/memusgA 'time'-like utility for Unix that measures peak memory usage
benedictpaten / marginAlign
Forked from mitenjain/nanoporeUCSC Nanopore
TGAC / NanoOK
Forked from richardmleggett/NanoOKAnalysis tool for Nanopore sequencing data
lh3 / htsbox
Forked from samtools/htslibMy experimental tools on top of htslib. NOT OFFICIAL!!!
Big-genome modification to sparseMEM from Khan et al.
benedictpaten / toil
Forked from DataBiosphere/toilPython based pipeline management software for clusters that makes running recursive and dynamically scheduled computations straightforward. So far works with gridEngine, lsf, parasol and on multi-c…
tg / golang.tmbundle
Forked from syscrusher/golang.tmbundleA TextMate bundle for the Go programming language