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Commits on Apr 28, 2022

• Dockerfile CUDA compilation round 4

  gahdritz

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  e9b75b2

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• Dockerfile CUDA compilation round 3

  gahdritz

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• Dockerfile CUDA compilation round 2

  gahdritz

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  453c90a

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• Test Dockerfile CUDA compilation

  gahdritz

  committed
  23c69cb

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• Fix validation metric bugs

  gahdritz

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Commits on Apr 26, 2022

• Update environment.yml

  gahdritz

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• Add type check to attention kernel

  gahdritz

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• Remove stray comment

  gahdritz

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• Add licence notice to kernel files

  gahdritz

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• Add FastFold link

  gahdritz

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• Add memory-efficient attention kernels

  gahdritz

  committed
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Commits on Apr 21, 2022

• Merge pull request aqlaboratory#97 from CyrusBiotechnology/small-bugfixes

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  gahdritz

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• fixing dockerfile and small bug in run_pretrained_openfold.py

  decarboxy

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Commits on Apr 20, 2022

• Correct wording in README

  gahdritz

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• Add LMA arXiv link to README

  gahdritz

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• Add features to README

  gahdritz

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Commits on Apr 19, 2022

• Fix template bugs

  gahdritz

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Commits on Apr 15, 2022

• Add missing pLDDT test

  gahdritz

  committed
  8c169fb

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Commits on Apr 14, 2022

• Fix evoformer paths in some old tests

  gahdritz

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Commits on Apr 13, 2022

• Remove exception for num_recycle=0

  gahdritz

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Commits on Apr 6, 2022

• Improve memory management in extra msa stack

  gahdritz

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Commits on Mar 30, 2022

• Add latest FASTA parser

  gahdritz

  committed
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• One more FASTA parsing fix...

  gahdritz

  committed
  dcc9072

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• Fix FASTA parsing again (hopefully for good)

  gahdritz

  committed
  094e338

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• Fix FASTA parsing bug in inference script

  gahdritz

  committed
  c59a85b

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• Undo DeepSpeed config change

  gahdritz

  committed
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Commits on Mar 29, 2022

• Fix FASTA parsing bug in inference script, add option to save outputs

  gahdritz

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  16e0082

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• Fix DeepSpeed config builder

  gahdritz

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  9f55817

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• Fix bug in DeepSpeed config

  gahdritz

  committed
  47f1d66

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Commits on Mar 23, 2022

• Fix bug in DRMSD function

  gahdritz

  committed
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Commits on Mar 21, 2022

• Fix default in LR scheduler

  gahdritz

  committed
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Commits on Mar 20, 2022

• Tweak training script. Install new LR scheduler

  gahdritz

  committed
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• Add DRMSD edge case

  gahdritz

  committed
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Commits on Mar 19, 2022

• Merge pull request aqlaboratory#90 from KiddoZhu/main

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  gahdritz

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Commits on Mar 18, 2022

• fix parameter restorage in validation

  KiddoZhu

  committed
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