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Commits on Nov 24, 2022

• Update README.md

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Commits on Sep 30, 2022

• Update README to direct users to new pipeline

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Commits on Nov 5, 2021

• Sort things locally instead of in /tmp

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Commits on Oct 28, 2021

• Remove default file options

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• Updated README for auto-github downloading

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Commits on Sep 15, 2021

• This repo is old, so branch is still master

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• Made nextflow auto-pull friendly

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Commits on Jul 21, 2021

• Move final output instead of symlinking

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Commits on Jan 15, 2021

• Blacked

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• Removed SLURM references from README

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Commits on Jan 22, 2020

• Added two packages

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• Changed to allow imperfectly paired bam files

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• Added super() call to Error definition

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Commits on Jan 17, 2020

• Format string bug fix

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Commits on Nov 19, 2019

• Make bedtools call explicit

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Commits on Aug 22, 2019

• Added a Dockerfile

  

  Edward S. Rice

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  c6692e2

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• Added SALSA path as env variable

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  33659a1

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Commits on Aug 21, 2019

• Converted to nextflow

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Commits on Jul 26, 2019

• Made SLURM and python scripts for whole pipeline

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• New script for combining R1 and R2

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  022eed8

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• New script for removing chimeric alignments

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• Ignore vim .swp files

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Commits on Jul 25, 2019

• Initial commit

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