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Commits on Jan 22, 2024

• sampling chromosomes according to length for the random variation

  

  wql443

  committed
  859612f

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Commits on Jan 16, 2024

• removed modulus operator

  

  wql443

  committed
  60d1b59

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• Random variation - additional method for number of variation. Both division and modulus are changed to solely rely of full genome length.

  

  wql443

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Commits on Nov 22, 2023

• sprintf deprecated to snprintf

  

  wql443

  committed
  770b447

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Commits on Nov 21, 2023

• fixed breadth of coverage for longer chromosomes, and unneccesary read sampling to increase wall clock time, updated maketest for new changes

  

  wql443

  committed
  57e593e

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• fixed breadth of coverage for longer chromosomes, and unneccesary read sampling to increase wall clock time, updated maketest for new changes

  

  wql443

  committed
  757bec5

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Commits on Oct 27, 2023

• segmentation core fault, and double corruption for allocation, corrupted size vs. prev_size

  

  wql443

  committed
  1c66dcf

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Commits on Oct 26, 2023

• fixed memory allocation for misc - random variants

  

  wql443

  committed
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Commits on Oct 10, 2023

• altered the printout message for global seed

  

  wql443

  committed
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Commits on Oct 6, 2023

• changed bug about q1 was required for fasta

  

  wql443

  committed
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• updated -lf,-ld,-l in terms of -c when -qs (not -q1) and -cl is or isn't provided

  

  wql443

  committed
  a9a2031

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Commits on Sep 15, 2023

• Merge pull request RAHenriksen#35 from fgvieira/misc_outputs

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  ANGSD

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Commits on Sep 13, 2023

• Consistent input/output options, and tweak help messages

  fgvieira

  committed
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Commits on Sep 12, 2023

• Added id information for genotype selection when creating the bed file

  

  wql443

  committed
  e8f83a6

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• Changing meta information and wrong argument

  

  wql443

  committed
  365f368

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• Updated random reference genome and random variation file

  

  wql443

  committed
  157fc32

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• File to remove stop codons from reference genome or specified codons

  

  wql443

  committed
  34d42c2

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Commits on Sep 11, 2023

• altered the misc makefile

  

  wql443

  committed
  8a1d7d8

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• created a vcf to bed file coordinate conversion

  

  wql443

  committed
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• Modified randomref to remove stop codons

  

  wql443

  committed
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Commits on Sep 8, 2023

• Update make.yml

  ANGSD

  authored
  1e90b39

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• Update MycoBactTest.md5

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  RAHenriksen

  authored
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• This should fail. Let us test.

  ANGSD

  committed
  3230773

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• added badge

  

  wql443

  committed
  6ebcb86

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• altered test back to correct to test badge for passing

  

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  committed
  a0a08fc

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• altering the badge for failure cases

  

  wql443

  committed
  385b5d4

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• Testing failure possiblity of make test

  

  wql443

  committed
  0642849

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Commits on Aug 17, 2023

• ensured mean fragment length works to calculate correct reads given -c for -qs fq,sam

  

  wql443

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Commits on Jul 26, 2023

• Altered the modification vector when using mf

  

  wql443

  committed
  9a6331b

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• added test for fixed quality score (-qs) with a lower limit (-ll)

  

  wql443

  committed
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• Added a fixed quality score (-qs) option

  

  wql443

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Commits on Jul 25, 2023

• changed the version print statement and the samtools sorting in test files due to different compression on various ubuntu system

  

  wql443

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Commits on Jul 24, 2023

• added echo statement for make test before samtools sort

  

  wql443

  committed
  9dc6103

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• added echo statement for make test

  

  wql443

  committed
  ecfea9d

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• Altered compression level for bam to sam test in make test and added more info for genetic variation test

  

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