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@article{cabana:2015,
title={Quantitative magnetization transfer imaging made easy with qMTLab: software for data simulation, analysis, and visualization},
author={Cabana, Jean-Fran{\c{c}}ois and Gu, Ye and Boudreau, Mathieu and Levesque, Ives R and Atchia, Yaaseen and Sled, John G and Narayanan, Sridar and Arnold, Douglas L and Pike, G Bruce and Cohen-Adad, Julien and others},
journal={Concepts in Magnetic Resonance Part A},
volume={44},
number={5},
pages={263--277},
year={2015},
publisher={Wiley Online Library}
}
@article{wood:2018,
title={QUIT: QUantitative imaging tools},
author={Wood, Tobias},
journal={Journal of Open Source Software},
volume={3},
number={26},
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year={2018}
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@article{tabelow:2019,
title={{hMRI}--A toolbox for quantitative {MRI} in neuroscience and clinical research},
author={Tabelow, Karsten and Balteau, Evelyne and Ashburner, John and Callaghan, Martina F and Draganski, Bogdan and Helms, Gunther and Kherif, Ferath and Leutritz, Tobias and Lutti, Antoine and Phillips, Christophe and others},
journal={Neuroimage},
volume={194},
pages={191--210},
year={2019},
publisher={Elsevier}
}
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publisher={Elsevier}
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@inproceedings{weiskopf:2008,
title={Multi-parameter mapping of the human brain at 1mm resolution in less than 20 minutes},
author={Weiskopf, N and Helms, G},
booktitle={Proceedings of ISMRM},
volume={16},
pages={2241},
year={2008}
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@article{hafyane:2018,
title={Let's talk about cardiac {T1} mapping},
author={{Hafyane}, T. and {Karakuzu}, A. and {Duquette}, C. and {Mongeon}, F.~P. and {Cohen-Adad}, J. and {Herold}, M.~J. and {Friedrich}, M.~G. and {Stikov}, N.},
journal={BioRxiv},
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year={2018},
doi = {10.1101/343079},
publisher={Cold Spring Harbor Laboratory}
}
@article{werys:2020,
title={Total Mapping Toolbox {(TOMATO)}: An open source library for cardiac magnetic resonance parametric mapping},
author={{Werys}, K. and {Dragonu}, I. and {Zhang}, Q. and {Popescu}, I. and {Hann}, E. and {Puchta}, H. and {Kubik}, A. and {Polat}, D. and {Wu}, C. and {Moon}, N.~O.},
journal={SoftwareX},
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year={2020},
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publisher={Elsevier}
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@misc{mezer:2016,
author = {{Mezer}, A. and {Berman}, S. and {Bain}, J.},
title = {mrQ},
year = {2016},
publisher = {GitHub},
journal = {GitHub repository},
url = {https://github.com/mezera/mrQ}
}
@misc{samsonov:2011,
author = {{Hurley}, S.~A. and {Mossahebi}, P. and {Samsonov}, A.~A.},
title = {Quantitative {MRI} Analysis Package},
year = {2011},
publisher = {University of Wisconsin - Madison},
journal = {Code repository},
url = {https://www.medphysics.wisc.edu/~samsonov/qmap/doc/index.html}
}
@article{raymond:1999,
title={The cathedral and the bazaar},
author={Raymond, Eric},
journal={Knowledge, Technology \& Policy},
volume={12},
number={3},
pages={23--49},
year={1999},
doi={10.4135/9781412950657.n33},
publisher={Springer}
}
@article{di:2017,
title={Nextflow enables reproducible computational workflows},
author={Di Tommaso, Paolo and Chatzou, Maria and Floden, Evan W and Barja, Pablo Prieto and Palumbo, Emilio and Notredame, Cedric},
journal={Nature biotechnology},
volume={35},
number={4},
pages={316--319},
year={2017},
publisher={Nature Publishing Group},
doi={10.1038/nbt.3820}
}
@article{theaud:2020,
title={TractoFlow: A robust, efficient and reproducible diffusion {MRI} pipeline leveraging {Nextflow} \& {Singularity}},
author={Theaud, Guillaume and Houde, Jean-Christophe and Bor{\'e}, Arnaud and Rheault, Fran{\c{c}}ois and Morency, Felix and Descoteaux, Maxime},
journal={NeuroImage},
pages={116889},
year={2020},
publisher={Elsevier},
doi={oi.org/10.1101/631952}
}
@inproceedings{cook:2006,
title={Camino: {open-source diffusion-MRI} reconstruction and processing},
author={Cook, PA and Bai, Yu and Nedjati-Gilani, SKKS and Seunarine, KK and Hall, MG and Parker, GJ and Alexander, D Cq},
booktitle={14th scientific meeting of the international society for magnetic resonance in medicine},
volume={2759},
pages={2759},
year={2006},
organization={Seattle WA, USA}
}
@article{garyfallidis:2014,
title={Dipy, a library for the analysis of diffusion {MRI} data},
author={Garyfallidis, Eleftherios and Brett, Matthew and Amirbekian, Bagrat and Rokem, Ariel and Van Der Walt, Stefan and Descoteaux, Maxime and Nimmo-Smith, Ian},
journal={Frontiers in neuroinformatics},
volume={8},
pages={8},
year={2014},
publisher={Frontiers},
doi={doi.org/10.3389/fninf.2014.00008}
}
@article{fick:2019,
title={The dmipy toolbox: Diffusion mri multi-compartment modeling and microstructure recovery made easy},
author={Fick, Rutger HJ and Wassermann, Demian and Deriche, Rachid},
journal={Frontiers in neuroinformatics},
volume={13},
pages={64},
year={2019},
publisher={Frontiers},
doi={doi.org/10.3389/fninf.2019.00064}
}