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Commits on May 29, 2024

• Update README.md to point to readthedocs

  Tony-xy-Liu

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• Merge pull request #5 from hallamlab/docs

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  Tony-xy-Liu

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• add theme for readthedocs build

  Tony-xy-Liu

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• Merge pull request #4 from hallamlab/docs

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  Tony-xy-Liu

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• test sphinx docs

  Tony-xy-Liu

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  9d48682

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• fix circular dependency

  Tony-xy-Liu

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• move main diagram

  Tony-xy-Liu

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• Merge pull request #3 from hallamlab/redux

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  Tony-xy-Liu

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• Merge branch 'master' into redux

  Tony-xy-Liu

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• update gitignore

  Tony-xy-Liu

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Commits on Mar 8, 2024

• fix err on root placement

  Tony-xy-Liu

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Commits on Dec 15, 2023

• fn to add placements at root for unannotated ORFs

  Tony-xy-Liu

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Commits on Dec 13, 2023

• udpate readme

  Tony-xy-Liu

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• update readme

  Tony-xy-Liu

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• conda package as python module

  Tony-xy-Liu

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Commits on Dec 12, 2023

• working prototype, tested with scadc

  Tony-xy-Liu

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Commits on Dec 11, 2023

• mv old gitignore

  Tony-xy-Liu

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• move old to legacy folder

  Tony-xy-Liu

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Commits on Sep 7, 2016

• Updated with latest analysis code

  nielshanson

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Commits on Aug 3, 2015

• Updated code to version to submit to Oxford Bioinformatics

  nielshanson

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Commits on May 21, 2015

• Updated README and logo

  nielshanson

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• Updated analysis script and analysis to version ready to submit to Oxford Bioinfromatics

  nielshanson

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Commits on May 20, 2015

• Updating analysis for Oxford Bioinformatics

  nielshanson

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Commits on Mar 25, 2015

• Finished rmd of analysis up to MetaPathways output. Running of LCAStar needs cleaning up

  nielshanson

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Commits on Mar 24, 2015

• Updated readme

  

  Niels Hanson

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Commits on Feb 24, 2015

• Allows setting of alpha-majority, reports preferred MEGAN taxonomies, prints full lineages if requested, and provides a verbose mode with the election votes displayed

  nielshanson

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Commits on Feb 23, 2015

• Early form of verbose mode.

  nielshanson

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Commits on Jan 27, 2015

• Added error bars

  nielshanson

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Commits on Dec 2, 2014

• Updated p-value analysis

  nielshanson

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Commits on Nov 29, 2014

• Completed first pass of writing up Methods. Need to refine simulation section.

  nielshanson

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• Delete LCAStar.html

  

  Niels Hanson

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• Delete LCAStar.Rmd

  

  Niels Hanson

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• Delete test.out.txt.bk

  

  Niels Hanson

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• Delete taxa_to_columns.R

  

  Niels Hanson

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• Delete main_lca_star.py

  

  Niels Hanson

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