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nextflow.config
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nextflow.config
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// Global default params, used in configs
params {
outdir = './nextflow_output'
clusterOptions = false
}
profiles {
standard {
includeConfig 'conf/base.config'
includeConfig 'conf/images.config'
}
k8s {
includeConfig 'conf/base.config'
includeConfig 'conf/images.config'
includeConfig 'conf/k8s.config'
}
singularity {
includeConfig 'conf/base.config'
includeConfig 'conf/lsf.config'
includeConfig 'conf/images.config'
includeConfig 'conf/singularity.config'
includeConfig 'conf/sanger-singularity.config'
}
}
// Capture exit codes from upstream processes when piping
process.shell = ['/bin/bash', '-euo', 'pipefail']
timeline {
enabled = true
file = "${params.outdir}/timeline.html"
}
trace {
enabled = true
file = "${params.outdir}/trace.txt"
}