Basic Computational Fluid Dynamics (CFD) schemes implemented in FORTRAN using Finite-Volume and Finite-Difference Methods. Sample simulations and figures are provided.

Scripts that are used during the 1D finite volume method tutorial.

Finite volume method applied to the advection-diffusion equation

Course notes for a course based on R.J. LeVeque's "Finite Volume Methods for Hyperbolic Problems"

C++ code for implementing a spatial model of Wolbachia spread following release into Aedes aegypti target populations

❗ This is a read-only mirror of the CRAN R package repository. PSPManalysis — Analysis of Physiologically Structured Population Models

This repository contains some MATLAB files which can be used to numerically solve integro-differential equations.

A study of tumour development and effects of cytotoxic drugs using Ordinary Differential Equations and Integro-Differential Equations.

simulation of chlorine disinfection using the advection-diffusion-reaction equation with a proportional controller to adjust dosage

Simulation of spatial deterministic/stochastic reaction-diffusion-advection problems embedded in Lagrangian reference frame particle based fluid dynamics domain

code for simulating pulse generation from advection diffusion coupled reactions

This will be a object-oriented PDE-solver, that allows one to solve a coupled nonlinear cross-diffusion system using the python wrapper for ngsolve (https://ngsolve.org/).

Eric Jalbert

CLV computation using Ginelli et al's algorithm

Relevant MATLAB code used to generate figures and results for my undergraduate thesis.

Python routines for managing XPP-Auto figure data and other work.

SIS Epidemic model simulation with Gillespie's algorithm (Matlab)

Some code for the numerical solution of classic PDEs (Matlab).

A Jupyter notebook and related files for a class on Fourier manipulation in Python

Code from my Mathematical Biology class at the University of Utah. Files are numerical solutions to applied PDE models in biology.

Supporting materials for Akhmetzhanov AR, Kim JW, Sullivan R, Beckman RA, Tamayo P, Yeang CH 2019 "Modelling bistable tumour population dynamics to design effective treatment strategies." Journal o…

Code that generates animations and figures of our model.

bifurcation analysis of cod3 unfoldings using MatCont

Code to solve PDEs using FlexPDE and to generate bifurcation diagrams with Auto and FlexPDE

Zooplankton Interconnections and Source-Sink Observation Utility (ZISSOU) for modelling marine larval connectivity

The writing for my thesis

A python package to quantify phytoplankton community size structure in the ocean

Differential Equation-Based toy model for studying carbon fluxes in a bay