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pyproject.toml
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[tool.poetry]
name = "virtool"
version = "0.0.0"
authors = [
"Ian Boyes",
"Reece Hoffmann",
"Aman Monga",
"Blake Smith",
"Jake Alexander",
"Josh Moreira",
"Lilly Roberts",
"Naomi Schaufele",
"Ryan Fang",
"Sebastian Chen",
"Tiansheng Sui"
]
maintainers = [
"Ian Boyes <[email protected]>"
]
description = "Viral infection diagnostics using next-generation sequencing"
license = "MIT"
classifiers = [
"Programming Language :: Python :: 3.12",
]
[tool.isort]
profile = "black"
[tool.poetry.dependencies]
python = "~3.12"
aiofiles = "^0.7.0"
aiohttp = {extras = ["speedups"], version = "~3.9"}
aioredis = "^1.3.1"
arrow = "^1.2.2"
asyncpg = "^0.29.0"
bcrypt = "^3.2.0"
biopython = "^1.79"
click = "^8.0.1"
dictdiffer = "^0.8.1"
Faker = "^12.3.3"
motor = "^3.1.2"
openpyxl = "^3.0.7"
psutil = "^5.8.0"
semver = "^2.13.0"
sentry-sdk = "^1.9.5"
SQLAlchemy = "^2.0.4"
visvalingamwyatt = "^0.1.4"
uvloop = "^0.19.0"
Cerberus = "^1.3.4"
PyYAML = "^6.0.0"
email-validator = "^2.0.0.post2"
PyJWT = "^2.3.0"
msal = "^1.16.0"
aiojobs = "^1.0.0"
aiohttp-pydantic = "^1.12.1"
orjson = "^3.8.0"
openfga-sdk = "^0.1.1"
alembic = {extras = ["tz"], version = "^1.10.3"}
virtool-core = "^11.1.0"
pytest = "^7.4.0"
syrupy = "^4.5.0"
setuptools = "^69.0.3"
[tool.poetry.scripts]
virtool = "virtool.config.cli:entry"
[tool.poetry.group.dev.dependencies]
isort = "^5.12.0"
aiohttp-devtools = "^0.0.2"
pytest-mock = "^3.11.1"
pytest-regressions = "^2.2.0"
pytest-xdist = "^3.3.1"
pytest-aiohttp = "^1.0.4"
pre-commit = "^3.3.3"
black = "^23.3.0"
pytest-rerunfailures = "^10.2"
pytest-asyncio = "^0.21.0"
sphinx = "^7.0.1"
sphinx-autobuild = "^2021.3.14"
sphinx-autofixture = "^0.4.0"
sphinx-autodoc-typehints = "^1.24.0"
sphinx-toolbox = "^3.5.0"
pytest-structlog = "^0.6"
mypy = "^1.6.0"
[tool.pytest.ini_options]
addopts = "--capture tee-sys"
asyncio_mode = "auto"
markers = ["apitest", "serial"]
python_files = ["test_*.py", "rev_*.py"]
testpaths = ["tests", "assets/revisions"]
[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"