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Commits on Jan 14, 2025

• Merge pull request #72 from ghuls/fix_dev_stdin

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• Automatically recognise /dev/stdin as stdin in bedgraphtobigwig and bedtobigwig.

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Commits on Jan 8, 2025

• Merge pull request #70 from ghuls/fix_empty_bedgraph

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  jackh726

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• Handle empty bedGraph input file.

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  ghuls

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• Merge pull request #69 from ghuls/fix_specifying_start_coordinate

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  jackh726

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• Allow specifying start coordinate argument for bigbedtobed and bigwigtobedgraph.

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Commits on Dec 30, 2024

• Merge pull request #68 from ghuls/support_maturin_1.8.0

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  jackh726

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• Support building with maturin 1.8.0.

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Commits on Nov 30, 2024

• Add test for autosql when writing big bed

  jackh726

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• Add autosql option to BigBedWrite::write

  jackh726

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• Fix wrong assert for oob bins

  jackh726

  committed
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• Bump pybigtools dependencies, namely pyo3 to 0.22 and numpy to 0.22

  jackh726

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Commits on Nov 28, 2024

• Bump bigtools to 0.5.5-dev and pybigtools to 0.2.4-dev

  jackh726

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Commits on Nov 27, 2024

• bigtools 0.5.4 and pybigtools 0.2.3

  jackh726

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• Merge pull request #65 from nvictus/build-mixed-project

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  jackh726

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• Help maturin recognize mixed rust-python project

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• Don't lint F403 or F405 in __init__.py

  jackh726

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• Convert pybigtools to a mixed Rust/Python project to ensure that source builds with pip behave correctly

  jackh726

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Commits on Nov 12, 2024

• Merge pull request #60 from donaldcampbelljr/donald_bigwigmerge

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• Format bigwigmerge.rs

  jackh726

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• Make other BigWigMergeArgs fields public

  donaldcampbelljr

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• make iter public

  donaldcampbelljr

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• make ChromGroupReadImpl public

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Commits on Nov 4, 2024

• When invalid chromosome in bigwigaverageoverbed, print size not zero

  jackh726

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• Bump bigtools to 0.5.4-dev and pybigtools to 0.2.3-dev

  jackh726

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• bigtools 0.5.3 and pybigtools 0.2.2

  jackh726

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Commits on Nov 2, 2024

• In bigwigaverageoverbed, when a chromosome is not in the bigwig, return 0

  jackh726

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Commits on Nov 1, 2024

• Fix pybigtools rest field

  jackh726

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• When infile is stdin, still read autosql file if specified

  jackh726

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• Item count is at full_data_offset

  jackh726

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• Fix bigBed zooms with overlapping regions

  jackh726

  committed
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• When bed is empty, don't fail at autosql step

  jackh726

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• Correctly include max zoom uncompressed size

  jackh726

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• Add debug option to bigbedinfo

  jackh726

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• Add option to manually set zooms

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