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Commits on Jan 17, 2025

• Update setup.py

  johahi

  authored
  80199bd

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• add variable crop target length

  

  buizzaludo

  authored and

  johahi

  committed
  4d93b81

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Commits on Jan 16, 2025

• Update README.md, include new Borzoi paper

  johahi

  authored
  e256690

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Commits on Jan 4, 2025

• Update README.md

  johahi

  authored
  65c9be8

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Commits on Dec 18, 2024

• Update README.md

  johahi

  authored
  c8ebafe

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• updated readme

  

  Johannes H

  committed
  912529e

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• more docstrings

  

  Johannes H

  committed
  10509e7

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Commits on Dec 16, 2024

• add pypi

  

  Johannes

  committed
  a405cb4

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Commits on Dec 5, 2024

• A bit fancier rel shift by adapting the vmap

  johahi

  authored
  1a97142

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Commits on Nov 25, 2024

• added flash-attention as optional dependency, fixed typo

  

  Johannes

  committed
  a94fb0b

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• added flash-attention as optional dependency

  

  Johannes

  committed
  ea875cc

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• squashed scale adjustments, transcriptome

  

  Johannes

  authored and

  johahi

  committed
  3dd4bd3

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• made undo squashed scale fully parametrized

  

  Karollus Alexander

  authored and

  johahi

  committed
  e5949de

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• order of operations does ofc matter

  

  Karollus Alexander

  authored and

  johahi

  committed
  267271f

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• typo fix

  

  Karollus Alexander

  authored and

  johahi

  committed
  f28c2f5

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• added gene name default in transcriptome for compatibility reasons

  

  Karollus Alexander

  authored and

  johahi

  committed
  910f90a

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• added transcriptome object

  

  Karollus Alexander

  authored and

  johahi

  committed
  12b3e98

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Commits on Nov 15, 2024

• Update README.md

  johahi

  authored
  3cde9b8

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Commits on Nov 8, 2024

• Added Borzoi mouse models to the huggingface hub and prepped package. Fixes #5

  johahi

  committed
  3b5342b

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Commits on Nov 7, 2024

• fix undo_squashed_scale

  johahi

  committed
  fec1baa

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• integrated scale_values in annotated borzoi

  johahi

  committed
  d556d98

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• fixed undo squashed scale, old and new versions of it

  johahi

  committed
  71bbc12

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• v0.3.5

  johahi

  committed
  122ad59

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• v0.3.4

  johahi

  committed
  420715f

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• Merge pull request #8 from johahi/annot_borzoi

  Show description for b01ec38
  Karollus

  authored
  b01ec38

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• added scaling option

  

  Karollus Alexander

  committed
  8ec0334

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• undo squashed scale fix

  johahi

  committed
  de49253

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Commits on Nov 4, 2024

• small fix

  johahi

  committed
  65b8f2c

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• Merge pull request #7 from johahi/annot_borzoi

  Show description for 380f6ef
  Karollus

  authored
  380f6ef

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• comsetic changes, bumped version

  

  Karollus Alexander

  committed
  84414dd

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• added MANIFEST

  

  Karollus Alexander

  committed
  efbf10f

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• added annotated borzoi

  

  Karollus Alexander

  committed
  3eb8f23

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Commits on Nov 2, 2024

• convenience function updates

  johahi

  committed
  f91903a

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• small updates

  johahi

  committed
  3ac6153

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• added gene_slice for faster inference

  johahi

  committed
  cee35ce

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