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18 results for source starred repositories written in Python
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RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information.

Python 2,211 568 Updated Feb 19, 2025

Dataset of Linus Torvalds' rants classified by negativity using sentiment analysis

Python 1,265 30 Updated Sep 15, 2020

Enhancing the Factorio experience with SAT solvers

Python 718 18 Updated Aug 25, 2024

KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files

Python 326 92 Updated Nov 16, 2023

Unified biological sequence manipulation in Python

Python 208 20 Updated Jun 12, 2024

🚀 A sequencing simulator

Python 193 35 Updated Aug 2, 2024

A graph-based deep learning framework for life science

Python 121 34 Updated Aug 3, 2023

compacted de Bruijn graph construction in low memory

Python 99 20 Updated Oct 4, 2024

Convert GTDB taxonomy to NCBI taxdump format

Python 67 13 Updated Aug 24, 2023
Python 49 6 Updated Dec 29, 2022

Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)

Python 43 4 Updated Sep 6, 2024
Python 40 17 Updated Jun 28, 2024

a Sequencing Quality Assessment Tool

Python 18 5 Updated Jul 28, 2022

R markdown documents copied from other folders on Dec 15th 2021

Python 14 2 Updated Mar 16, 2023

Code to create polar sets for genome sketching.

Python 6 Updated Jan 31, 2021

Exploration of fractal properties of DNA

Python 4 Updated May 25, 2020

Using pixels to exfiltrate data - and we're not talking base64+OCR!

Python 3 Updated Dec 30, 2022

A Dockerfile and wrappers for the Kraken metagenomic classifier

Python 3 2 Updated Aug 17, 2015