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  • Tohoku University
  • Sendai, Japan

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Starred repositories

23 stars written in Jupyter Notebook
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CLIP (Contrastive Language-Image Pretraining), Predict the most relevant text snippet given an image

Jupyter Notebook 26,678 3,385 Updated Jul 23, 2024

🤖 Python examples of popular machine learning algorithms with interactive Jupyter demos and math being explained

Jupyter Notebook 23,215 4,074 Updated Nov 12, 2024

A collection of various deep learning architectures, models, and tips

Jupyter Notebook 16,808 4,020 Updated Feb 8, 2024

This repository contains implementations and illustrative code to accompany DeepMind publications

Jupyter Notebook 13,361 2,614 Updated Nov 18, 2024

NYU Deep Learning Spring 2020

Jupyter Notebook 6,705 2,221 Updated Sep 10, 2024

"Probabilistic Machine Learning" - a book series by Kevin Murphy

Jupyter Notebook 5,041 599 Updated Nov 26, 2024

a toolkit for working with Oxford nanopore data

Jupyter Notebook 243 88 Updated Feb 6, 2023

Mondo Disease Ontology

Jupyter Notebook 237 54 Updated Dec 23, 2024

Solving NLP problems with Vowpal Wabbit: Tutorial and more

Jupyter Notebook 182 26 Updated Mar 8, 2016

Sequana: a set of Snakemake NGS pipelines

Jupyter Notebook 146 27 Updated Oct 17, 2024

An implementation of the Viterbi Algorithm for training Hidden Markov models. This repo accompanies the video found here: https://www.youtube.com/watch?v=kqSzLo9fenk

Jupyter Notebook 140 69 Updated Sep 14, 2022

genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF

Jupyter Notebook 135 40 Updated Jun 2, 2021

dbSNP

Jupyter Notebook 127 47 Updated Jun 21, 2024

Peregrine: Fast Genome Assembler Using SHIMMER Index

Jupyter Notebook 101 9 Updated Feb 6, 2022

RO is an ontology of relations for use with biological ontologies

Jupyter Notebook 94 47 Updated Dec 11, 2024

DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.

Jupyter Notebook 49 21 Updated May 20, 2022

Implicit Interval Tree with Interpolation Index

Jupyter Notebook 41 4 Updated Jul 13, 2022

Vowpal Wabbit examples and tutorials

Jupyter Notebook 20 24 Updated Jan 20, 2022

Collapsed Haplotype Pattern Method for Linkage Analysis of Next-Generation Sequencing Data

Jupyter Notebook 7 6 Updated Apr 12, 2023

https://misshie.github.io/rdinfo2020/

Jupyter Notebook 5 Updated Mar 13, 2020

PhenoApt python client API library

Jupyter Notebook 5 3 Updated Nov 27, 2021

Transforming different problems into Contextual Bandits reduction using Vowpal Wabbit

Jupyter Notebook 4 1 Updated Mar 29, 2020