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compile.log
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running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building extension "barotropic" sources
f2py options: []
f2py:> /tmp/tmpmdx5v31f/src.linux-x86_64-3.6/barotropicmodule.c
creating /tmp/tmpmdx5v31f/src.linux-x86_64-3.6
Reading fortran codes...
Reading file 'barotropic.f90' (format:free)
Post-processing...
Block: barotropic
Block: velocity
Block: ubar
Block: vbar
Post-processing (stage 2)...
Block: barotropic
Block: unknown_interface
Block: velocity
Block: ubar
Block: vbar
Building modules...
Building module "barotropic"...
Constructing F90 module support for "velocity"...
Constructing wrapper function "velocity.ubar"...
outdat = ubar(dat,outdat,z_w,z_wu,[nroms,ii,jj,xi_rho,eta_rho,overwrite_dat,overwrite_outdat,overwrite_z_w,overwrite_z_wu])
Constructing wrapper function "velocity.vbar"...
outdat = vbar(dat,outdat,z_w,z_wv,[nroms,ii,jj,xi_rho,eta_rho,overwrite_dat,overwrite_outdat,overwrite_z_w,overwrite_z_wv])
Wrote C/API module "barotropic" to file "/tmp/tmpmdx5v31f/src.linux-x86_64-3.6/barotropicmodule.c"
Fortran 90 wrappers are saved to "/tmp/tmpmdx5v31f/src.linux-x86_64-3.6/barotropic-f2pywrappers2.f90"
adding '/tmp/tmpmdx5v31f/src.linux-x86_64-3.6/fortranobject.c' to sources.
adding '/tmp/tmpmdx5v31f/src.linux-x86_64-3.6' to include_dirs.
copying /home/pete/anaconda3/envs/pyroms_MI/lib/python3.6/site-packages/numpy/f2py/src/fortranobject.c -> /tmp/tmpmdx5v31f/src.linux-x86_64-3.6
copying /home/pete/anaconda3/envs/pyroms_MI/lib/python3.6/site-packages/numpy/f2py/src/fortranobject.h -> /tmp/tmpmdx5v31f/src.linux-x86_64-3.6
adding '/tmp/tmpmdx5v31f/src.linux-x86_64-3.6/barotropic-f2pywrappers2.f90' to sources.
build_src: building npy-pkg config files
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']'
customize Gnu95FCompiler
Found executable /usr/bin/gfortran
customize Gnu95FCompiler
customize Gnu95FCompiler using build_ext
building 'barotropic' extension
compiling C sources
C compiler: gcc -pthread -B /home/pete/anaconda3/envs/pyroms_MI/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating /tmp/tmpmdx5v31f/tmp
creating /tmp/tmpmdx5v31f/tmp/tmpmdx5v31f
creating /tmp/tmpmdx5v31f/tmp/tmpmdx5v31f/src.linux-x86_64-3.6
compile options: '-I/tmp/tmpmdx5v31f/src.linux-x86_64-3.6 -I/home/pete/anaconda3/envs/pyroms_MI/lib/python3.6/site-packages/numpy/core/include -I/home/pete/anaconda3/envs/pyroms_MI/include/python3.6m -c'
gcc: /tmp/tmpmdx5v31f/src.linux-x86_64-3.6/barotropicmodule.c
gcc: /tmp/tmpmdx5v31f/src.linux-x86_64-3.6/fortranobject.c
compiling Fortran 90 module sources
Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops
Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
compile options: '-I/tmp/tmpmdx5v31f/src.linux-x86_64-3.6 -I/home/pete/anaconda3/envs/pyroms_MI/lib/python3.6/site-packages/numpy/core/include -I/home/pete/anaconda3/envs/pyroms_MI/include/python3.6m -c'
extra options: '-J/tmp/tmpmdx5v31f/ -I/tmp/tmpmdx5v31f/'
gfortran:f90: barotropic.f90
compiling Fortran sources
Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops
Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
compile options: '-I/tmp/tmpmdx5v31f/src.linux-x86_64-3.6 -I/home/pete/anaconda3/envs/pyroms_MI/lib/python3.6/site-packages/numpy/core/include -I/home/pete/anaconda3/envs/pyroms_MI/include/python3.6m -c'
extra options: '-J/tmp/tmpmdx5v31f/ -I/tmp/tmpmdx5v31f/'
gfortran:f90: /tmp/tmpmdx5v31f/src.linux-x86_64-3.6/barotropic-f2pywrappers2.f90
/usr/bin/gfortran -Wall -g -Wall -g -shared /tmp/tmpmdx5v31f/tmp/tmpmdx5v31f/src.linux-x86_64-3.6/barotropicmodule.o /tmp/tmpmdx5v31f/tmp/tmpmdx5v31f/src.linux-x86_64-3.6/fortranobject.o /tmp/tmpmdx5v31f/barotropic.o /tmp/tmpmdx5v31f/tmp/tmpmdx5v31f/src.linux-x86_64-3.6/barotropic-f2pywrappers2.o -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -lgfortran -o ./barotropic.cpython-36m-x86_64-linux-gnu.so
Removing build directory /tmp/tmpmdx5v31f
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building extension "interpolation" sources
f2py options: []
f2py:> /tmp/tmpcho75e2k/src.linux-x86_64-3.6/interpolationmodule.c
creating /tmp/tmpcho75e2k/src.linux-x86_64-3.6
Reading fortran codes...
Reading file 'interpolation.f90' (format:free)
Post-processing...
Block: interpolation
Block: interpolation
Block: dovertinter
Block: rho2u
Block: rho2v
Block: rotate
Post-processing (stage 2)...
Block: interpolation
Block: unknown_interface
Block: interpolation
Block: dovertinter
Block: rho2u
Block: rho2v
Block: rotate
Building modules...
Building module "interpolation"...
Constructing F90 module support for "interpolation"...
Constructing wrapper function "interpolation.dovertinter"...
outdat = dovertinter(outdat,dat,bathymetry,zr,zs,[nroms,nsoda,ii,jj,xi_rho,eta_rho,overwrite_outdat,overwrite_dat,overwrite_bathymetry,overwrite_zr,overwrite_zs])
Constructing wrapper function "interpolation.rho2u"...
udata = rho2u(udata,rhodata,[ii,jj,kk,overwrite_udata,overwrite_rhodata])
Constructing wrapper function "interpolation.rho2v"...
vdata = rho2v(vdata,rhodata,[ii,jj,kk,overwrite_vdata,overwrite_rhodata])
Constructing wrapper function "interpolation.rotate"...
urot,vrot = rotate(urot,vrot,u_rho,v_rho,angle,[ii,jj,kk,overwrite_urot,overwrite_vrot,overwrite_u_rho,overwrite_v_rho,overwrite_angle])
Wrote C/API module "interpolation" to file "/tmp/tmpcho75e2k/src.linux-x86_64-3.6/interpolationmodule.c"
Fortran 90 wrappers are saved to "/tmp/tmpcho75e2k/src.linux-x86_64-3.6/interpolation-f2pywrappers2.f90"
adding '/tmp/tmpcho75e2k/src.linux-x86_64-3.6/fortranobject.c' to sources.
adding '/tmp/tmpcho75e2k/src.linux-x86_64-3.6' to include_dirs.
copying /home/pete/anaconda3/envs/pyroms_MI/lib/python3.6/site-packages/numpy/f2py/src/fortranobject.c -> /tmp/tmpcho75e2k/src.linux-x86_64-3.6
copying /home/pete/anaconda3/envs/pyroms_MI/lib/python3.6/site-packages/numpy/f2py/src/fortranobject.h -> /tmp/tmpcho75e2k/src.linux-x86_64-3.6
adding '/tmp/tmpcho75e2k/src.linux-x86_64-3.6/interpolation-f2pywrappers2.f90' to sources.
build_src: building npy-pkg config files
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']'
customize Gnu95FCompiler
Found executable /usr/bin/gfortran
customize Gnu95FCompiler
customize Gnu95FCompiler using build_ext
building 'interpolation' extension
compiling C sources
C compiler: gcc -pthread -B /home/pete/anaconda3/envs/pyroms_MI/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating /tmp/tmpcho75e2k/tmp
creating /tmp/tmpcho75e2k/tmp/tmpcho75e2k
creating /tmp/tmpcho75e2k/tmp/tmpcho75e2k/src.linux-x86_64-3.6
compile options: '-I/tmp/tmpcho75e2k/src.linux-x86_64-3.6 -I/home/pete/anaconda3/envs/pyroms_MI/lib/python3.6/site-packages/numpy/core/include -I/home/pete/anaconda3/envs/pyroms_MI/include/python3.6m -c'
gcc: /tmp/tmpcho75e2k/src.linux-x86_64-3.6/interpolationmodule.c
gcc: /tmp/tmpcho75e2k/src.linux-x86_64-3.6/fortranobject.c
compiling Fortran 90 module sources
Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops
Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
compile options: '-I/tmp/tmpcho75e2k/src.linux-x86_64-3.6 -I/home/pete/anaconda3/envs/pyroms_MI/lib/python3.6/site-packages/numpy/core/include -I/home/pete/anaconda3/envs/pyroms_MI/include/python3.6m -c'
extra options: '-J/tmp/tmpcho75e2k/ -I/tmp/tmpcho75e2k/'
gfortran:f90: interpolation.f90
compiling Fortran sources
Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops
Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
compile options: '-I/tmp/tmpcho75e2k/src.linux-x86_64-3.6 -I/home/pete/anaconda3/envs/pyroms_MI/lib/python3.6/site-packages/numpy/core/include -I/home/pete/anaconda3/envs/pyroms_MI/include/python3.6m -c'
extra options: '-J/tmp/tmpcho75e2k/ -I/tmp/tmpcho75e2k/'
gfortran:f90: /tmp/tmpcho75e2k/src.linux-x86_64-3.6/interpolation-f2pywrappers2.f90
/usr/bin/gfortran -Wall -g -Wall -g -shared /tmp/tmpcho75e2k/tmp/tmpcho75e2k/src.linux-x86_64-3.6/interpolationmodule.o /tmp/tmpcho75e2k/tmp/tmpcho75e2k/src.linux-x86_64-3.6/fortranobject.o /tmp/tmpcho75e2k/interpolation.o /tmp/tmpcho75e2k/tmp/tmpcho75e2k/src.linux-x86_64-3.6/interpolation-f2pywrappers2.o -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -lgfortran -o ./interpolation.cpython-36m-x86_64-linux-gnu.so
Removing build directory /tmp/tmpcho75e2k
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building extension "extrapolate" sources
f2py options: []
f2py:> /tmp/tmp3o2xhrde/src.linux-x86_64-3.6/extrapolatemodule.c
creating /tmp/tmp3o2xhrde/src.linux-x86_64-3.6
Reading fortran codes...
Reading file 'fill.f90' (format:free)
Post-processing...
Block: extrapolate
Block: extrapolate
Block: fill
Post-processing (stage 2)...
Block: extrapolate
Block: unknown_interface
Block: extrapolate
Block: fill
Building modules...
Building module "extrapolate"...
Constructing F90 module support for "extrapolate"...
Constructing wrapper function "extrapolate.fill"...
za = fill(i1,i2,j1,j2,tx,critx,cor,mxs,za,[nx,ny,overwrite_za])
Wrote C/API module "extrapolate" to file "/tmp/tmp3o2xhrde/src.linux-x86_64-3.6/extrapolatemodule.c"
Fortran 90 wrappers are saved to "/tmp/tmp3o2xhrde/src.linux-x86_64-3.6/extrapolate-f2pywrappers2.f90"
adding '/tmp/tmp3o2xhrde/src.linux-x86_64-3.6/fortranobject.c' to sources.
adding '/tmp/tmp3o2xhrde/src.linux-x86_64-3.6' to include_dirs.
copying /home/pete/anaconda3/envs/pyroms_MI/lib/python3.6/site-packages/numpy/f2py/src/fortranobject.c -> /tmp/tmp3o2xhrde/src.linux-x86_64-3.6
copying /home/pete/anaconda3/envs/pyroms_MI/lib/python3.6/site-packages/numpy/f2py/src/fortranobject.h -> /tmp/tmp3o2xhrde/src.linux-x86_64-3.6
adding '/tmp/tmp3o2xhrde/src.linux-x86_64-3.6/extrapolate-f2pywrappers2.f90' to sources.
build_src: building npy-pkg config files
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']'
customize Gnu95FCompiler
Found executable /usr/bin/gfortran
customize Gnu95FCompiler
customize Gnu95FCompiler using build_ext
building 'extrapolate' extension
compiling C sources
C compiler: gcc -pthread -B /home/pete/anaconda3/envs/pyroms_MI/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating /tmp/tmp3o2xhrde/tmp
creating /tmp/tmp3o2xhrde/tmp/tmp3o2xhrde
creating /tmp/tmp3o2xhrde/tmp/tmp3o2xhrde/src.linux-x86_64-3.6
compile options: '-I/tmp/tmp3o2xhrde/src.linux-x86_64-3.6 -I/home/pete/anaconda3/envs/pyroms_MI/lib/python3.6/site-packages/numpy/core/include -I/home/pete/anaconda3/envs/pyroms_MI/include/python3.6m -c'
gcc: /tmp/tmp3o2xhrde/src.linux-x86_64-3.6/extrapolatemodule.c
gcc: /tmp/tmp3o2xhrde/src.linux-x86_64-3.6/fortranobject.c
compiling Fortran 90 module sources
Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops
Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
compile options: '-I/tmp/tmp3o2xhrde/src.linux-x86_64-3.6 -I/home/pete/anaconda3/envs/pyroms_MI/lib/python3.6/site-packages/numpy/core/include -I/home/pete/anaconda3/envs/pyroms_MI/include/python3.6m -c'
extra options: '-J/tmp/tmp3o2xhrde/ -I/tmp/tmp3o2xhrde/'
gfortran:f90: fill.f90
compiling Fortran sources
Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops
Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
compile options: '-I/tmp/tmp3o2xhrde/src.linux-x86_64-3.6 -I/home/pete/anaconda3/envs/pyroms_MI/lib/python3.6/site-packages/numpy/core/include -I/home/pete/anaconda3/envs/pyroms_MI/include/python3.6m -c'
extra options: '-J/tmp/tmp3o2xhrde/ -I/tmp/tmp3o2xhrde/'
gfortran:f90: /tmp/tmp3o2xhrde/src.linux-x86_64-3.6/extrapolate-f2pywrappers2.f90
/usr/bin/gfortran -Wall -g -Wall -g -shared /tmp/tmp3o2xhrde/tmp/tmp3o2xhrde/src.linux-x86_64-3.6/extrapolatemodule.o /tmp/tmp3o2xhrde/tmp/tmp3o2xhrde/src.linux-x86_64-3.6/fortranobject.o /tmp/tmp3o2xhrde/fill.o /tmp/tmp3o2xhrde/tmp/tmp3o2xhrde/src.linux-x86_64-3.6/extrapolate-f2pywrappers2.o -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -lgfortran -o ./extrapolate.cpython-36m-x86_64-linux-gnu.so
Removing build directory /tmp/tmp3o2xhrde