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Commits on Nov 1, 2023

• update notebooks

  kamurani

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  4dff21c

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• add kinase labels and update dataset

  kamurani

  committed
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Commits on Oct 27, 2023

• add kinase family files

  kamurani

  committed
  8365a1d

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Commits on Oct 23, 2023

• add pip install requirements for phosphosite-ml-env

  kamurani

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  89e3926

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• add notebooks from previous data analysis

  kamurani

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  9479e07

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• add notebook data to gitignore

  kamurani

  committed
  ec9f6b3

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• add directories to gitignore

  kamurani

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• add predict_step to model

  kamurani

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Commits on Oct 22, 2023

• add masking generation from y_index

  kamurani

  committed
  1003c40

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• fix masking

  kamurani

  committed
  9f36c30

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• add peptideatlas

  kamurani

  committed
  f9d2e2b

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• update batching to use y_index

  kamurani

  committed
  b4d98f0

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Commits on Oct 19, 2023

• update datasets

  kamurani

  committed
  2adbadb

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• add sampling from distribution

  kamurani

  committed
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Commits on Oct 18, 2023

• add filtering steps for distribution selection.

  kamurani

  committed
  b56d1e1

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• add missing axis param in apply function

  kamurani

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  609e2a9

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Commits on Oct 9, 2023

• add list of protein ids

  kamurani

  committed
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Commits on Oct 5, 2023

• change phosphositegraphdataset to inherit from pyg Dataset

  kamurani

  committed
  6794402

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• remove y_list reference in PhosphoGraphDataset which now uses y_label_dict

  kamurani

  committed
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Commits on Sep 25, 2023

• update notebooks

  kamurani

  committed
  1c3230c

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• fix dataset failing with None graphs being converted to pyg

  kamurani

  committed
  d3aacc0

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Commits on Sep 19, 2023

• fix typo

  kamurani

  committed
  b667cd4

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• fix typo

  kamurani

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  668b112

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• re-arrange ml module

  kamurani

  committed
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Commits on Sep 15, 2023

• add plots

  kamurani

  committed
  981746e

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• add results

  kamurani

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  e1ee4ad

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• update generate graph for psite prediction

  kamurani

  committed
  8e44ba4

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• add html plots

  kamurani

  committed
  57e4d70

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• add peptide overlap notebook

  kamurani

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  88c59a9

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• add generate script

  kamurani

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  d175bb9

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• add bubble notebooks

  kamurani

  committed
  bba11d6

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• update notebooks

  kamurani

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  1b2d0ea

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• update package

  kamurani

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  495c4eb

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Commits on Sep 14, 2023

• get warnings to STFU

  kamurani

  committed
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• add masked f1 score

  kamurani

  committed
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