packages.bib

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2020},
  url = {https://www.R-project.org/},
}

@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2020},
  note = {R package version 0.20.2},
  url = {https://github.com/rstudio/bookdown},
}

@Manual{R-broom,
  title = {broom: Convert Statistical Objects into Tidy Tibbles},
  author = {David Robinson and Alex Hayes and Simon Couch},
  year = {2020},
  note = {R package version 0.7.0},
  url = {https://CRAN.R-project.org/package=broom},
}

@Manual{R-caret,
  title = {caret: Classification and Regression Training},
  author = {Max Kuhn},
  year = {2020},
  note = {R package version 6.0-86},
  url = {https://CRAN.R-project.org/package=caret},
}

@Manual{R-countrycode,
  title = {countrycode: Convert Country Names and Country Codes},
  author = {Vincent Arel-Bundock},
  year = {2020},
  note = {R package version 1.2.0},
  url = {https://CRAN.R-project.org/package=countrycode},
}

@Manual{R-dplyr,
  title = {dplyr: A Grammar of Data Manipulation},
  author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller},
  year = {2020},
  note = {R package version 1.0.1},
  url = {https://CRAN.R-project.org/package=dplyr},
}

@Manual{R-dslabs,
  title = {dslabs: Data Science Labs},
  author = {Rafael A. Irizarry and Amy Gill},
  year = {2019},
  note = {R package version 0.7.3},
  url = {https://CRAN.R-project.org/package=dslabs},
}

@Manual{R-english,
  title = {english: Translate Integers into English},
  author = {John Fox and Bill Venables and Anthony Damico and Anne Pier Salverda},
  year = {2020},
  note = {R package version 1.2-5},
  url = {https://CRAN.R-project.org/package=english},
}

@Manual{R-forcats,
  title = {forcats: Tools for Working with Categorical Variables (Factors)},
  author = {Hadley Wickham},
  year = {2020},
  note = {R package version 0.5.0},
  url = {https://CRAN.R-project.org/package=forcats},
}

@Manual{R-foreach,
  title = {foreach: Provides Foreach Looping Construct},
  author = {{Revolution Analytics} and Steve Weston}},
  year = {2020},
  note = {R package version 1.5.0},
  url = {https://CRAN.R-project.org/package=foreach},
}

@Manual{R-futile.logger,
  title = {futile.logger: A Logging Utility for R},
  author = {Brian Lee Yung Rowe},
  year = {2016},
  note = {R package version 1.4.3},
  url = {https://CRAN.R-project.org/package=futile.logger},
}

@Manual{R-gam,
  title = {gam: Generalized Additive Models},
  author = {Trevor Hastie},
  year = {2020},
  note = {R package version 1.20},
  url = {https://CRAN.R-project.org/package=gam},
}

@Manual{R-gganimate,
  title = {gganimate: A Grammar of Animated Graphics},
  author = {Thomas Lin Pedersen and David Robinson},
  year = {2020},
  note = {R package version 1.0.6},
  url = {https://CRAN.R-project.org/package=gganimate},
}

@Manual{R-ggflags,
  title = {ggflags: Plot flags of the world in ggplot2.},
  author = {Baptiste Auguie},
  year = {2020},
  note = {R package version 0.0.2},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington},
  year = {2020},
  note = {R package version 3.3.2},
  url = {https://CRAN.R-project.org/package=ggplot2},
}

@Manual{R-ggrepel,
  title = {ggrepel: Automatically Position Non-Overlapping Text Labels with
'ggplot2'},
  author = {Kamil Slowikowski},
  year = {2020},
  note = {R package version 0.8.2},
  url = {https://CRAN.R-project.org/package=ggrepel},
}

@Manual{R-ggridges,
  title = {ggridges: Ridgeline Plots in 'ggplot2'},
  author = {Claus O. Wilke},
  year = {2020},
  note = {R package version 0.5.2},
  url = {https://CRAN.R-project.org/package=ggridges},
}

@Manual{R-ggthemes,
  title = {ggthemes: Extra Themes, Scales and Geoms for 'ggplot2'},
  author = {Jeffrey B. Arnold},
  year = {2019},
  note = {R package version 4.2.0},
  url = {https://CRAN.R-project.org/package=ggthemes},
}

@Manual{R-gridExtra,
  title = {gridExtra: Miscellaneous Functions for "Grid" Graphics},
  author = {Baptiste Auguie},
  year = {2017},
  note = {R package version 2.3},
  url = {https://CRAN.R-project.org/package=gridExtra},
}

@Manual{R-gtools,
  title = {gtools: Various R Programming Tools},
  author = {Gregory R. Warnes and Ben Bolker and Thomas Lumley},
  year = {2020},
  note = {R package version 3.8.2},
  url = {https://CRAN.R-project.org/package=gtools},
}

@Manual{R-HistData,
  title = {HistData: Data Sets from the History of Statistics and Data Visualization},
  author = {Michael Friendly},
  year = {2020},
  note = {R package version 0.8-6},
  url = {https://CRAN.R-project.org/package=HistData},
}

@Manual{R-jsonlite,
  title = {jsonlite: A Robust, High Performance JSON Parser and Generator for R},
  author = {Jeroen Ooms},
  year = {2020},
  note = {R package version 1.7.0},
  url = {https://CRAN.R-project.org/package=jsonlite},
}

@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2020},
  note = {R package version 1.29},
  url = {https://CRAN.R-project.org/package=knitr},
}

@Manual{R-Lahman,
  title = {Lahman: Sean 'Lahman' Baseball Database},
  author = {Michael Friendly and Chris Dalzell and Martin Monkman and Dennis Murphy},
  year = {2020},
  note = {R package version 8.0-0},
  url = {https://CRAN.R-project.org/package=Lahman},
}

@Manual{R-lattice,
  title = {lattice: Trellis Graphics for R},
  author = {Deepayan Sarkar},
  year = {2020},
  note = {R package version 0.20-41},
  url = {https://CRAN.R-project.org/package=lattice},
}

@Manual{R-lpSolve,
  title = {lpSolve: Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs},
  author = {Michel Berkelaar and others},
  year = {2020},
  note = {R package version 5.6.15},
  url = {https://CRAN.R-project.org/package=lpSolve},
}

@Manual{R-lubridate,
  title = {lubridate: Make Dealing with Dates a Little Easier},
  author = {Vitalie Spinu and Garrett Grolemund and Hadley Wickham},
  year = {2020},
  note = {R package version 1.7.9},
  url = {https://CRAN.R-project.org/package=lubridate},
}

@Manual{R-maps,
  title = {maps: Draw Geographical Maps},
  author = {Ray Brownrigg},
  year = {2018},
  note = {R package version 3.3.0},
  url = {https://CRAN.R-project.org/package=maps},
}

@Manual{R-MASS,
  title = {MASS: Support Functions and Datasets for Venables and Ripley's MASS},
  author = {Brian Ripley},
  year = {2020},
  note = {R package version 7.3-51.6},
  url = {https://CRAN.R-project.org/package=MASS},
}

@Manual{R-matrixStats,
  title = {matrixStats: Functions that Apply to Rows and Columns of Matrices (and to
Vectors)},
  author = {Henrik Bengtsson},
  year = {2020},
  note = {R package version 0.56.0},
  url = {https://CRAN.R-project.org/package=matrixStats},
}

@Manual{R-NHANES,
  title = {NHANES: Data from the US National Health and Nutrition Examination Study},
  author = {Randall Pruim},
  year = {2015},
  note = {R package version 2.1.0},
  url = {https://CRAN.R-project.org/package=NHANES},
}

@Manual{R-purrr,
  title = {purrr: Functional Programming Tools},
  author = {Lionel Henry and Hadley Wickham},
  year = {2020},
  note = {R package version 0.3.4},
  url = {https://CRAN.R-project.org/package=purrr},
}

@Manual{R-rafalib,
  title = {rafalib: Convenience Functions for Routine Data Exploration},
  author = {Rafael A. Irizarry and Michael I. Love},
  year = {2015},
  note = {R package version 1.0.0},
  url = {https://CRAN.R-project.org/package=rafalib},
}

@Manual{R-randomForest,
  title = {randomForest: Breiman and Cutler's Random Forests for Classification and
Regression},
  author = {Leo Breiman and Adele Cutler and Andy Liaw and Matthew Wiener},
  year = {2018},
  note = {R package version 4.6-14},
  url = {https://CRAN.R-project.org/package=randomForest},
}

@Manual{R-RColorBrewer,
  title = {RColorBrewer: ColorBrewer Palettes},
  author = {Erich Neuwirth},
  year = {2014},
  note = {R package version 1.1-2},
  url = {https://CRAN.R-project.org/package=RColorBrewer},
}

@Manual{R-readr,
  title = {readr: Read Rectangular Text Data},
  author = {Hadley Wickham and Jim Hester and Romain Francois},
  year = {2018},
  note = {R package version 1.3.1},
  url = {https://CRAN.R-project.org/package=readr},
}

@Manual{R-reshape2,
  title = {reshape2: Flexibly Reshape Data: A Reboot of the Reshape Package},
  author = {Hadley Wickham},
  year = {2020},
  note = {R package version 1.4.4},
  url = {https://CRAN.R-project.org/package=reshape2},
}

@Manual{R-rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  year = {2020},
  note = {R package version 2.3},
  url = {https://CRAN.R-project.org/package=rmarkdown},
}

@Manual{R-rpart,
  title = {rpart: Recursive Partitioning and Regression Trees},
  author = {Terry Therneau and Beth Atkinson},
  year = {2019},
  note = {R package version 4.1-15},
  url = {https://CRAN.R-project.org/package=rpart},
}

@Manual{R-rvest,
  title = {rvest: Easily Harvest (Scrape) Web Pages},
  author = {Hadley Wickham},
  year = {2020},
  note = {R package version 0.3.6},
  url = {https://CRAN.R-project.org/package=rvest},
}

@Manual{R-scales,
  title = {scales: Scale Functions for Visualization},
  author = {Hadley Wickham and Dana Seidel},
  year = {2020},
  note = {R package version 1.1.1},
  url = {https://CRAN.R-project.org/package=scales},
}

@Manual{R-scatterplot3d,
  title = {scatterplot3d: 3D Scatter Plot},
  author = {Uwe Ligges and Martin Maechler and Sarah Schnackenberg},
  year = {2018},
  note = {R package version 0.3-41},
  url = {https://CRAN.R-project.org/package=scatterplot3d},
}

@Manual{R-stringr,
  title = {stringr: Simple, Consistent Wrappers for Common String Operations},
  author = {Hadley Wickham},
  year = {2019},
  note = {R package version 1.4.0},
  url = {https://CRAN.R-project.org/package=stringr},
}

@Manual{R-textdata,
  title = {textdata: Download and Load Various Text Datasets},
  author = {Emil Hvitfeldt},
  year = {2020},
  note = {R package version 0.4.1},
  url = {https://CRAN.R-project.org/package=textdata},
}

@Manual{R-tibble,
  title = {tibble: Simple Data Frames},
  author = {Kirill Müller and Hadley Wickham},
  year = {2020},
  note = {R package version 3.0.3},
  url = {https://CRAN.R-project.org/package=tibble},
}

@Manual{R-tidyr,
  title = {tidyr: Tidy Messy Data},
  author = {Hadley Wickham and Lionel Henry},
  year = {2020},
  note = {R package version 1.1.1},
  url = {https://CRAN.R-project.org/package=tidyr},
}

@Manual{R-tidytext,
  title = {tidytext: Text Mining using 'dplyr', 'ggplot2', and Other Tidy Tools},
  author = {David Robinson and Julia Silge},
  year = {2020},
  note = {R package version 0.2.5},
  url = {https://CRAN.R-project.org/package=tidytext},
}

@Manual{R-tidyverse,
  title = {tidyverse: Easily Install and Load the 'Tidyverse'},
  author = {Hadley Wickham},
  year = {2019},
  note = {R package version 1.3.0},
  url = {https://CRAN.R-project.org/package=tidyverse},
}

@Manual{R-VennDiagram,
  title = {VennDiagram: Generate High-Resolution Venn and Euler Plots},
  author = {Hanbo Chen},
  year = {2018},
  note = {R package version 1.6.20},
  url = {https://CRAN.R-project.org/package=VennDiagram},
}

@Manual{R-xml2,
  title = {xml2: Parse XML},
  author = {Hadley Wickham and Jim Hester and Jeroen Ooms},
  year = {2020},
  note = {R package version 1.3.2},
  url = {https://CRAN.R-project.org/package=xml2},
}

@Book{bookdown2016,
  title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2016},
  note = {ISBN 978-1138700109},
  url = {https://github.com/rstudio/bookdown},
}

@Article{countrycode2018,
  title = {countrycode: An R package to convert country names and country codes},
  author = {Vincent Arel-Bundock and Nils Enevoldsen and CJ Yetman},
  journal = {Journal of Open Source Software},
  year = {2018},
  volume = {3},
  number = {28},
  pages = {848},
  url = {https://doi.org/10.21105/joss.00848},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Article{jsonlite2014,
  title = {The jsonlite Package: A Practical and Consistent Mapping Between JSON Data and R Objects},
  author = {Jeroen Ooms},
  journal = {arXiv:1403.2805 [stat.CO]},
  year = {2014},
  url = {https://arxiv.org/abs/1403.2805},
}

@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
  url = {http://www.crcpress.com/product/isbn/9781466561595},
}

@Book{lattice2008,
  title = {Lattice: Multivariate Data Visualization with R},
  author = {Deepayan Sarkar},
  publisher = {Springer},
  address = {New York},
  year = {2008},
  note = {ISBN 978-0-387-75968-5},
  url = {http://lmdvr.r-forge.r-project.org},
}

@Article{lubridate2011,
  title = {Dates and Times Made Easy with {lubridate}},
  author = {Garrett Grolemund and Hadley Wickham},
  journal = {Journal of Statistical Software},
  year = {2011},
  volume = {40},
  number = {3},
  pages = {1--25},
  url = {http://www.jstatsoft.org/v40/i03/},
}

@Book{MASS2002,
  title = {Modern Applied Statistics with S},
  author = {W. N. Venables and B. D. Ripley},
  publisher = {Springer},
  edition = {Fourth},
  address = {New York},
  year = {2002},
  note = {ISBN 0-387-95457-0},
  url = {http://www.stats.ox.ac.uk/pub/MASS4},
}

@Article{randomForest2002,
  title = {Classification and Regression by randomForest},
  author = {Andy Liaw and Matthew Wiener},
  journal = {R News},
  year = {2002},
  volume = {2},
  number = {3},
  pages = {18-22},
  url = {https://CRAN.R-project.org/doc/Rnews/},
}

@Article{reshape22007,
  title = {Reshaping Data with the {reshape} Package},
  author = {Hadley Wickham},
  journal = {Journal of Statistical Software},
  year = {2007},
  volume = {21},
  number = {12},
  pages = {1--20},
  url = {http://www.jstatsoft.org/v21/i12/},
}

@Book{rmarkdown2018,
  title = {R Markdown: The Definitive Guide},
  author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2018},
  note = {ISBN 9781138359338},
  url = {https://bookdown.org/yihui/rmarkdown},
}

@Article{scatterplot3d2003,
  title = {Scatterplot3d - an R Package for Visualizing Multivariate Data},
  author = {Uwe Ligges and Martin M{\"a}chler},
  journal = {Journal of Statistical Software},
  year = {2003},
  pages = {1--20},
  number = {11},
  volume = {8},
  url = {http://www.jstatsoft.org},
}

@Article{tidytext2016,
  title = {tidytext: Text Mining and Analysis Using Tidy Data Principles in R},
  author = {Julia Silge and David Robinson},
  doi = {10.21105/joss.00037},
  url = {http://dx.doi.org/10.21105/joss.00037},
  year = {2016},
  publisher = {The Open Journal},
  volume = {1},
  number = {3},
  journal = {JOSS},
}

@Article{tidyverse2019,
  title = {Welcome to the {tidyverse}},
  author = {Hadley Wickham and Mara Averick and Jennifer Bryan and Winston Chang and Lucy D'Agostino McGowan and Romain François and Garrett Grolemund and Alex Hayes and Lionel Henry and Jim Hester and Max Kuhn and Thomas Lin Pedersen and Evan Miller and Stephan Milton Bache and Kirill Müller and Jeroen Ooms and David Robinson and Dana Paige Seidel and Vitalie Spinu and Kohske Takahashi and Davis Vaughan and Claus Wilke and Kara Woo and Hiroaki Yutani},
  year = {2019},
  journal = {Journal of Open Source Software},
  volume = {4},
  number = {43},
  pages = {1686},
  doi = {10.21105/joss.01686},
}