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Commits on Oct 16, 2019

• README: make it clear this is 3.0 repository

  biochem-fan

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Commits on Oct 14, 2019

• GUI: use "--reconstruct_subtracted_bodies" in continuation as well (as reported by Dr. Yanagisawa)

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Commits on Oct 10, 2019

• Create a bug-report template

  biochem-fan

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Commits on Oct 1, 2019

• Extract: repair uninitialised variables

  biochem-fan

  committed
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Commits on Aug 8, 2019

• relion_mask_create: fixed --and, --or, --and_not, --or_not. (GitHub issue 3dem#495)

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Commits on Aug 7, 2019

• Refine3D: don't allow Refine3D on even number of MPI processes.

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Commits on Jul 2, 2019

• split: always use at least three digits; this is a very dirty workaround but necessary for RelionIt...

  biochem-fan

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• Call this 3.0.7

  biochem-fan

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Commits on Jun 29, 2019

• bfactor.py, relion_it.py: repaired split file names (bug reported by Shaun Rawson)

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Commits on Jun 18, 2019

• relion_star_handler --split: The GUI cannot reliably detect a finished job. A fundamental fix requires 3.1, so put a friendly message instead.

  biochem-fan

  committed
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• relion_MPI_Bcast: fixed a bug where the MPI communicator (comm) was ignored when calculating ranks. This fixes the GitHub issue 3dem#473 and problems reported in CCPEM by Wim Hagen, Dieter Blaas an…

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Commits on Jun 7, 2019

• RelionCor: don't die but warn when the number of frames is too small.

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• This is 3.0.6.

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Commits on Jun 6, 2019

• PostProcess: fix a bug where postprocess_masked.mrc is overwritten with --half_maps.

  biochem-fan

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Commits on Jun 4, 2019

• AutoPicker: reject 3D references for filaments

  biochem-fan

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Commits on Jun 3, 2019

• --LoG_use_ctf is not available in 3.0

  biochem-fan

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• LoG picker: changed the default inter-particle cutoff to 100 % (pick 'touching' neighbours).

  biochem-fan

  committed
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• LoG picker: fixed inter-particle distance cutoff

  biochem-fan

  committed
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• AutoPicker: --LoG_upper_threshold

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  committed
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Commits on May 23, 2019

• relion_star_handler --split: removed an assumption on the number of digits

  biochem-fan

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Commits on May 20, 2019

• RelionCor: supported 100 kV

  biochem-fan

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Commits on May 14, 2019

• scratch: avoid use of wildcards to prevent too long arguments (GitHub issue 3dem#467 reported by @EMBL-Structures)

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Commits on May 13, 2019

• Improve stability of histogram generation.

  biochem-fan

  committed
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Commits on May 7, 2019

• This is 3.0.5.

  biochem-fan

  committed
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• Scratch: repaired crash when 'parallel disc I/O' is no and running on multiple nodes. Call this 3.0.5.

  biochem-fan

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Commits on Apr 30, 2019

• AutoPicker: removed debug output (reported by David Hoover on CCPEM)

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Commits on Apr 26, 2019

• Non-void functions should always explicitly return something (GitHub issue 3dem#453 reported by @riverseow and @kmlyn).

  biochem-fan

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Commits on Apr 15, 2019

• Improved an error message when the directory is not writable.

  biochem-fan

  committed
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Commits on Apr 11, 2019

• RelionCor: fixed the path to non-dose weighted sums in a log file

  biochem-fan

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Commits on Apr 10, 2019

• AUTHORS: Included CPlot2D (reported in GitHub issues 3dem#460; thanks for pointing this out)

  biochem-fan

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Commits on Apr 3, 2019

• Multibody: fix crash during initialisation (reported by Rafael Fernández Leiro). Call this 3.0.4.

  biochem-fan

  committed
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• Merge branch 'ver3.0' of https://bitbucket.org/scheres/relion-devel-lmb into bitbucket-3.0

  biochem-fan

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• Merge branch 'ver3.0' of https://bitbucket.org/scheres/relion-devel-lmb into ver3.0

  biochem-fan

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• Fix build when Intel Compiler is used

  

  CharlesCongdon

  authored and

  biochem-fan

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• relion_flex_analyse: preserve the original image names in the rlnImageOriginalName column (reported by Sean Connell on CCPEM)

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