cellPlot.Rd

% Generated by roxygen2 (4.1.1): do not edit by hand
% Please edit documentation in R/seurat.R
\name{cellPlot}
\alias{cellPlot}
\title{Cell-cell scatter plot}
\usage{
cellPlot(object, cell1, cell2, gene.ids = NULL, col.use = "black",
  nrpoints.use = Inf, pch.use = 16, cex.use = 0.5, do.ident = FALSE,
  ...)
}
\arguments{
\item{object}{Seurat object}

\item{cell1}{Cell 1 name (can also be a number, representing the position in
object@cell.names)}

\item{cell2}{Cell 2 name (can also be a number, representing the position in
object@cell.names)}

\item{gene.ids}{Genes to plot (default, all genes)}

\item{col.use}{Colors to use for the points}

\item{nrpoints.use}{Parameter for smoothScatter}

\item{pch.use}{Point symbol to use}

\item{cex.use}{Point size}

\item{do.ident}{FALSE by default. If TRUE, allows you to click on individual
points to reveal gene names (hit ESC to stop)}

\item{\dots}{Additional arguments to pass to smoothScatter}
}
\value{
No return value (plots a scatter plot)
}
\description{
Creates a plot of scatter plot of genes across two single cells
}