A versatile pairwise aligner for genomic and spliced nucleotide sequences

The CLIMB management web interface

GVL Dashboard

The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

SDK for GPU accelerated genome assembly and analysis

Ansible scripts for setting up the smrt analysis portal on a GVL

Assembling the cause of phenotypes and genotypes from NGS data

A tool to circularize genome assemblies

Short scripts for genome file manipulations and primer design/matching

🔧 .files, including ~/.macos — sensible hacker defaults for macOS

Variant call verification

Variant call adjudication

Cli tools for Mykrobe atlas and Mykrobe predictor

Beautiful static documentation for your API

A simple LaTeX academic CV template

A repository to demonstrate collaboration workflows

React Dashboard - isomorphic admin dashboard template (React.js, Bootstrap, Node.js, GraphQL, React Router, Babel, Webpack, Browsersync)

Analysis tool for Nanopore sequencing data

Reusable graphical components for genomic data

The ARTIC field bioinformatics pipeline

Conda recipes for the bioconda channel.

Paint genomes with taxa-specific k-mer probabilities

A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing efficiency

PacBio® variant and consensus caller (Quiver algorithm)

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

Software developer resume in Latex