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Commits on Mar 25, 2022

• Merge branch 'remora_1.0' into 'master'

  Show description for 84fd459
  iiSeymour

  committed
  84fd459

Commits on Mar 22, 2022

• Update remora interface to 1.0

  marcus1487

  committed
  e797681

Commits on Mar 15, 2022

• Merge branch 'fixes' into 'master'

  Show description for 54b5002
  iiSeymour

  committed
  54b5002

Commits on Mar 14, 2022

• Fix number of epochs at training

  

  Srinivas Rana

  authored and

  Srinivas Rana

  committed
  312d24f

Commits on Mar 7, 2022

• Merge branch 'sdavis_pretrain_fix' into 'master'

  Show description for 2bbea4c
  iiSeymour

  committed
  2bbea4c

• pretrain loads config, excluding lr_scheduler so default used

  

  samgd

  authored and

  iiSeymour

  committed
  ec984c2

• Merge branch 'sdavis_relax_reqs' into 'master'

  Show description for 2bbabba
  iiSeymour

  committed
  2bbabba

• relax tqdm and pandas version constraints

  samgd

  committed
  0319209

Commits on Feb 21, 2022

• Merge branch 'optimization' into 'master'

  Show description for 0ba0961
  iiSeymour

  committed
  0ba0961

• Unbind the whole tensor in one go to optimize ref decoding

  

  Srinivas Rana

  authored and

  Srinivas Rana

  committed
  d57a658

Commits on Feb 20, 2022

• scaling: ensure mad is at least 1.0 for short reads

  iiSeymour

  committed
  3187198

Commits on Feb 11, 2022

• v0.5.1

  iiSeymour

  committed
  70e5499

• ns:i number of samples prior to trimming

  iiSeymour

  committed
  346e950

Commits on Feb 10, 2022

• Merge branch 'move-sam' into 'master'

  Show description for 6562cb3
  iiSeymour

  committed
  6562cb3

• docs

  iiSeymour

  committed
  481ed11

Commits on Feb 9, 2022

• ns:i & ts:i

  iiSeymour

  committed
  9b95ecd

• add ns:i and ts:i for num samples and trimmed samples

  iiSeymour

  committed
  e386830

• no moves in fastq

  iiSeymour

  committed
  29bc048

• merge add-koi-ctc into master

  iiSeymour

  committed
  1f3fbcd

• latest remora

  iiSeymour

  committed
  faa386f

• ont-koi 0.0.7

  iiSeymour

  committed
  a6a3ed2

• dropping py3.6

  iiSeymour

  committed
  968a509

• depend on koi-cuda

  iiSeymour

  committed
  6acee51

Commits on Feb 4, 2022

• scaling: ensure mad is at least 1.0

  iiSeymour

  committed
  6e91a9d

Commits on Feb 2, 2022

• fix mm2 preset

  iiSeymour

  committed
  6f23467

Commits on Jan 27, 2022

• Merge branch 'bump_remora' into 'master'

  Show description for 4b15525
  iiSeymour

  committed
  4b15525

• Bump Remora version.

  marcus1487

  committed
  2bbd711

Commits on Jan 26, 2022

• remove unecessary comment

  vellamike

  committed
  b087241

• CTC support in Koi. Drops seqdist requirement

  vellamike

  committed
  aed8a45

• fixes for bonito.ctc

  iiSeymour

  committed
  bf6da9c

Commits on Jan 25, 2022

• mark mv as optional

  iiSeymour

  committed
  797a2c6

• logz working, sparse kernels WIP

  vellamike

  committed
  75a0fb6

Commits on Jan 24, 2022

• move table in SAM/BAM

  iiSeymour

  committed
  241e622

Commits on Jan 19, 2022

• Bugfix - make default lr as string to avoid typerror

  vellamike

  committed
  abd59f8

Commits on Jan 17, 2022

• mappy 2.24

  iiSeymour

  committed
  fed59be

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