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Commits on Sep 11, 2020

• Implements extra filtering, adds dataviz report (#35)

  Show description for 3522f1d
  

  3 peopleauthored
  3522f1d

Commits on Aug 14, 2020

• Updates run command

  cgpu

  authored
  a83861f

• Adds plot in the README

  cgpu

  authored
  152b0dc

• manhattan.png

  cgpu

  authored
  acaf3e1

Commits on Jul 29, 2020

• Updated plink input param

  PhilPalmer

  committed
  abd40d6

• Updated comment

  PhilPalmer

  committed
  997c21e

Commits on Jul 28, 2020

• Added TODO comments

  PhilPalmer

  committed
  02359df

• Added docker image for plink2 + bcftools

  PhilPalmer

  committed
  1bacbcc

• Added plink test set output

  PhilPalmer

  committed
  41b0651

• Fixed comment headers

  PhilPalmer

  committed
  a60519d

• Added new parameter and specificied pre gwas filtering container

  PhilPalmer

  committed
  951af9a

• Added process for pre gwas filtering

  PhilPalmer

  committed
  81e9fbc

• Updated process names

  PhilPalmer

  committed
  d60de55

• Added gitignore file

  PhilPalmer

  committed
  94baca8

• Updated vcfs list input file to use s3 links

  PhilPalmer

  committed
  a80d725

• Updated example command to use s3 links

  PhilPalmer

  committed
  5564625

• Added spa_tests 2nd gwas nf process

  PhilPalmer

  committed
  8e735fb

• Added new vcfs input param and specified container for step2 gwas process

  PhilPalmer

  committed
  b300078

• Added example input file

  PhilPalmer

  committed
  3af1385

• Added example command

  PhilPalmer

  committed
  3320b98

• Fixed fit_null_glmm process tag

  PhilPalmer

  committed
  03271b0

Commits on Jul 27, 2020

• Removed uncessary script comments

  PhilPalmer

  committed
  8c5fe80

• Fixed missing params in saigeStep1ExtraFlags

  PhilPalmer

  committed
  d06039e

• Fixed plink channel setup

  PhilPalmer

  committed
  93e3b28

• Removed uncessary param

  PhilPalmer

  committed
  5add008

• Fixed loading of input params

  PhilPalmer

  committed
  a49c624

• Added initial main script and config

  PhilPalmer

  committed
  4a822ad

• Added SAIGE RScripts

  PhilPalmer

  committed
  be78cd6

• Initial commit

  PhilPalmer

  committed
  0a1acc6