added embedding layers not showing

[ShuonanChen]

Short description: I used scanpy to craete umap and pca obsm embeddings to my data but these are not recognized in cirrocumulus when loaded (as shown in the screenshot). Could you suggest why this could happen?

Long description:
Initially the data was stored as Seurate object in rds file. When I convert this into h5ad, the umap from seurat shows fine. However when I load this h5ad into python and re-run the analysis (pca, umap, etc) these embeddings are not added and the original Seurat umap result is also gone. This is how I read and write the h5ad files

adata = sc.read_h5ad('data_directory/file.h5ad')
## ...... run scanpy umap and pca analsyis, ......
print(adata.obsm) # this would show `AxisArrays with keys: X_pca, X_umap`
adata.write_h5ad('/mytarget_directory/tempfile.h5ad')

Thanks in advance!