Bioinformatics

Sequence Analysis

• SneakySnake: A Fast and Accurate Universal Genome Pre-Alignment Filter for CPUs, GPUs, and FPGAs (2019)
• Shouji: a fast and efficient pre-alignment filter for sequence alignment (2019)
• Shifted Hamming distance: a fast and accurate SIMD-friendly filter to accelerate alignment verification in read mapping (2015)