ALRAChooseKPlot.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/visualization.R
\name{ALRAChooseKPlot}
\alias{ALRAChooseKPlot}
\title{ALRA Approximate Rank Selection Plot}
\usage{
ALRAChooseKPlot(object, start = 0, combine = TRUE)
}
\arguments{
\item{object}{Seurat object}

\item{start}{Index to start plotting singular value spacings from.
The transition from "signal" to "noise" in the is hard to see because the
first singular value spacings are so large. Nicer visualizations result from
skipping the first few. If set to 0 (default) starts from k/2.}

\item{combine}{Combine plots into a single \code{\link[patchwork]{patchwork}ed}
ggplot object. If \code{FALSE}, return a list of ggplot objects}
}
\value{
A list of 3 \code{\link[patchwork]{patchwork}ed} ggplot objects
splotting the singular values, the spacings of the singular values, and the
p-values of the singular values.
}
\description{
Plots the results of the approximate rank selection process for ALRA.
}
\note{
ALRAChooseKPlot and associated functions are being moved to SeuratWrappers;
for more information on SeuratWrappers, please see \url{https://github.com/satijalab/seurat-wrappers}
}
\seealso{
\code{\link{RunALRA}}
}
\author{
Jun Zhao, George Linderman
}