inference_cfg.yaml

# Hyperparameters for combinatorics code to assemble individuals.
# Mathis et al. xyz

variant: 0

##############################################################################
#### Assembly of PAFs to individuals
##############################################################################

# Filtering connections:
# Least strength of a paf cost (to be included in assembly)
pafthreshold: 0.1

method: 'm1'

# Assembly:
#least number of connections (to actually form an animal)
minimalnumberofconnections: willbeautomaticallyupdatedbycreate_training_datasetcode
#reasonable default: len(cfg['multianimalbodyparts'])/2
pcutoff: 0.1

# max. number of objects to keep:
topktoretain: willbeautomaticallyupdatedbycreate_training_datasetcode
#reasonable default: len(cfg['individuals'])+1*(len(cfg['uniquebodyparts'])>0)

# Also extract ID:
withid: False

##############################################################################
#### Tracker variables (should be crossvalidated)
##############################################################################
#p/m pixels in width and height for increasing bounding boxes.
boundingboxslack : 0

# Intersection over Union (IoU) threshold for linking two bounding boxes
iou_threshold: .6
# maximum duration of a lost tracklet before it's considered a "new animal" (in frames)
max_age: 1
# minimum number of consecutive frames before a detection is tracked
min_hits: 1