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TODO.md

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TODO

User interface

  • GUI or napari plugin
  • limit output to informative messages
  • informative error message when registration between pair of views fails, and possibly save input images to temp dir
  • add ipython notebook for debugging (napari?)

###Performance

  • perform blockwise transformations to handle large target volumes
  • optimize weight calculation (downscaling seems to take long) (dask.array.coarsen?)

Registration

  • be tolerant to wrong registrations
    • build graph for registrations and resolve shortest paths
    • build candidate pairs from metadata (e.g. group in y, define weights by difference of angle, distance between middle of stacks)