Commits

Commits on Dec 2, 2022

Add functions for napari visualization and
m-albert
committedDec 2, 2022

Commits on Nov 5, 2022

More generalization from 3d->Nd
m-albert
committedNov 5, 2022

Commits on Oct 24, 2022

minor
m-albert
committedOct 24, 2022

Commits on Oct 14, 2022

Use czifile instead of acispylibczi for reading
m-albert
committedOct 14, 2022

Commits on Oct 13, 2022

Added functionality to read multitile czi files
m-albert
committedOct 13, 2022

Commits on Sep 19, 2022

Registration working for stitching in 2D
m-albert
committedSep 19, 2022

Commits on Sep 16, 2022

Adaptations for stitching application:
m-albert
committedSep 16, 2022

Commits on Nov 24, 2020

Add notebook with an experimental stitching workflow.
m-albert
committedNov 24, 2020

Commits on Nov 23, 2020

Add notebook with an experimental stitching workflow.
m-albert
committedNov 23, 2020
1) Add option to pass filenames and stack properties over view_dict.
m-albert
committedNov 23, 2020

Commits on Oct 23, 2020

update todo
m-albert
committedOct 23, 2020

Commits on Oct 8, 2020

minor
m-albert
committedOct 8, 2020
single threaded for gpu transformation
m-albert
committedOct 8, 2020
minor
m-albert
committedOct 8, 2020
minor
m-albert
committedOct 8, 2020
small fix
m-albert
committedOct 8, 2020
small fix
m-albert
committedOct 8, 2020
Use cupy for dask transformation
m-albert
committedOct 8, 2020
- change backend of chunkwise transformation from simpleitk to numpy
m-albert
committedOct 8, 2020

Commits on Oct 7, 2020

fix artefact that can appear in chunkwise transformation
m-albert
committedOct 7, 2020

Commits on Oct 6, 2020

Add possibility to avoid elastix completely
m-albert
committedOct 6, 2020
Syntax
m-albert
committedOct 6, 2020
Don't average transformations
m-albert
committedOct 6, 2020
Add notebook for inspecting the output of a run
m-albert
committedOct 6, 2020
Add option to write out stacks from pairwise registrations 2
m-albert
committedOct 6, 2020
Add option to write out stacks from pairwise registrations
m-albert
committedOct 6, 2020
Expose pairwise registration mode to run file
m-albert
committedOct 6, 2020

Commits on Oct 5, 2020

Use clahe implementation from skimage
m-albert
committedOct 5, 2020
Calculate registration mask using clahe
m-albert
committedOct 5, 2020
cleaning
m-albert
committedOct 5, 2020
Added error message and stack writing in case of failed pairwise registrations
m-albert
committedOct 5, 2020

Commits on Aug 31, 2020

Updated README
m-albert
committedAug 31, 2020
fuse multiple files with one run script
m-albert
committedAug 31, 2020

Commits on Aug 28, 2020

improved comments in run script
m-albert
committedAug 28, 2020

Commits on Aug 25, 2020

use single thread in case of cupy to hopefully avoid cuda memory problems
m-albert
committedAug 25, 2020