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MA_test2.filt2.fna
MA_test2.filt2.fna
 
 
README
README
 
 
carsonella_pe_filt.fna
carsonella_pe_filt.fna
 
 
carsonella_pe_filt.fq
carsonella_pe_filt.fq
 
 
carsonella_reference.fna
carsonella_reference.fna
 
 
combined.fa
combined.fa
 
 
combined.tiny.fa
combined.tiny.fa
 
 
lambda.sim.pac.fastq
lambda.sim.pac.fastq
 
 
run_pipeline_test.sh
run_pipeline_test.sh
 
 
run_test3.sh
run_test3.sh
 
 
run_test_fast.sh
run_test_fast.sh
 
 
test.asm
test.asm
 
 
test.ctg.asm
test.ctg.asm
 
 
test1.fq
test1.fq
 
 
test12.fq
test12.fq
 
 
test2.fq
test2.fq
 
 
test_amphora.sh
test_amphora.sh
 
 
test_blast.sh
test_blast.sh
 
 
test_bowtie2.sh
test_bowtie2.sh
 
 
test_ca.sh
test_ca.sh
 
 
test_ca_fasta.sh
test_ca_fasta.sh
 
 
test_create.sh
test_create.sh
 
 
test_fcp.sh
test_fcp.sh
 
 
test_filter_all.sh
test_filter_all.sh
 
 
test_filter_interleaved_fasta.sh
test_filter_interleaved_fasta.sh
 
 
test_filter_interleaved_fastq.sh
test_filter_interleaved_fastq.sh
 
 
test_filter_noninterleaved_fasta.sh
test_filter_noninterleaved_fasta.sh
 
 
test_filter_noninterleaved_fastq.sh
test_filter_noninterleaved_fastq.sh
 
 
test_ima.ini
test_ima.ini
 
 
test_ima.sh
test_ima.sh
 
 
test_kraken.sh
test_kraken.sh
 
 
test_metaphyler.sh
test_metaphyler.sh
 
 
test_metavelvet.sh
test_metavelvet.sh
 
 
test_minimus.sh
test_minimus.sh
 
 
test_missingfiles.sh
test_missingfiles.sh
 
 
test_newbler.sh
test_newbler.sh
 
 
test_pbcr.sh
test_pbcr.sh
 
 
test_phmmer.sh
test_phmmer.sh
 
 
test_phylosift.sh
test_phylosift.sh
 
 
test_phymm.sh
test_phymm.sh
 
 
test_soap.sh
test_soap.sh
 
 
test_soap_mg.sh
test_soap_mg.sh
 
 
test_soap_mg_tiny.sh
test_soap_mg_tiny.sh
 
 
test_spades.sh
test_spades.sh
 
 
test_sparse.sh
test_sparse.sh
 
 
test_sra.sh
test_sra.sh
 
 
test_velvet.sh
test_velvet.sh
 
 
test_velvetsc.sh
test_velvetsc.sh
 
 

README

Here we have some test scripts to make sure things work as advertised