From e067084628179f8b66947c8a0df948f65b87b286 Mon Sep 17 00:00:00 2001
From: Richard Gill <richardgill@users.noreply.github.com>
Date: Thu, 29 Dec 2016 17:07:09 +0000
Subject: [PATCH 1/4] Some suggestions for running script outside of AWS

---
 setup/install-gpu.sh | 20 ++++++++++++++------
 1 file changed, 14 insertions(+), 6 deletions(-)

diff --git a/setup/install-gpu.sh b/setup/install-gpu.sh
index 43fcaefef..dac054be5 100755
--- a/setup/install-gpu.sh
+++ b/setup/install-gpu.sh
@@ -1,3 +1,5 @@
+# This script is designed to work with ubuntu 16.04 LTS
+
 sudo apt-get update && apt-get --assume-yes upgrade
 sudo apt-get --assume-yes install tmux build-essential gcc g++ make binutils
 sudo apt-get --assume-yes install software-properties-common
@@ -13,15 +15,22 @@ mkdir downloads
 cd downloads
 wget https://repo.continuum.io/archive/Anaconda2-4.2.0-Linux-x86_64.sh
 bash Anaconda2-4.2.0-Linux-x86_64.sh -b
-echo 'export PATH="/home/ubuntu/anaconda2/bin:$PATH"' >> ~/.bashrc
-export PATH="/home/ubuntu/anaconda2/bin:$PATH"
+echo 'export PATH="$HOME/anaconda2/bin:$PATH"' >> ~/.bashrc
+export PATH="$HOME/anaconda2/bin:$PATH"
 conda install -y bcolz
 conda upgrade -y --all
 
 pip install theano
 echo "[global]
 device = gpu
-floatX = float32" > ~/.theanorc
+floatX = float32" 
+
+[lib]
+cnmem=.75
+
+[cuda]
+root = /usr/local/cuda
+> ~/.theanorc
 
 pip install keras
 mkdir ~/.keras
@@ -40,8 +49,7 @@ sudo cp include/* /usr/local/cuda/include/
 
 jupyter notebook --generate-config
 jupass=`python -c "from notebook.auth import passwd; print(passwd())"`
-echo "c.NotebookApp.password = u'"$jupass"'" >> .jupyter/jupyter_notebook_config.py
+echo "c.NotebookApp.password = u'"$jupass"'" >> ~/.jupyter/jupyter_notebook_config.py
 echo "c.NotebookApp.ip = '*'
-c.NotebookApp.open_browser = False" >> .jupyter/jupyter_notebook_config.py
+c.NotebookApp.open_browser = False" >> ~/.jupyter/jupyter_notebook_config.py
 mkdir nbs
-

From f39a57dfe1a3072b902559e5c9c66c544cec598d Mon Sep 17 00:00:00 2001
From: Richard Gill <richard@rgill.co.uk>
Date: Thu, 29 Dec 2016 17:21:02 +0000
Subject: [PATCH 2/4] Fixed a couple of bugs

---
 setup/install-gpu.sh | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/setup/install-gpu.sh b/setup/install-gpu.sh
index dac054be5..399009710 100755
--- a/setup/install-gpu.sh
+++ b/setup/install-gpu.sh
@@ -15,7 +15,7 @@ mkdir downloads
 cd downloads
 wget https://repo.continuum.io/archive/Anaconda2-4.2.0-Linux-x86_64.sh
 bash Anaconda2-4.2.0-Linux-x86_64.sh -b
-echo 'export PATH="$HOME/anaconda2/bin:$PATH"' >> ~/.bashrc
+echo "export PATH=\"$HOME/anaconda2/bin:\$PATH\"" >> ~/.bashrc
 export PATH="$HOME/anaconda2/bin:$PATH"
 conda install -y bcolz
 conda upgrade -y --all
@@ -23,14 +23,13 @@ conda upgrade -y --all
 pip install theano
 echo "[global]
 device = gpu
-floatX = float32" 
+floatX = float32
 
 [lib]
 cnmem=.75
 
 [cuda]
-root = /usr/local/cuda
-> ~/.theanorc
+root = /usr/local/cuda" > ~/.theanorc1
 
 pip install keras
 mkdir ~/.keras

From d0463a11909e7e4e89936ecfed93ea6742baed67 Mon Sep 17 00:00:00 2001
From: Richard Gill <richard@rgill.co.uk>
Date: Sat, 31 Dec 2016 16:29:32 +0000
Subject: [PATCH 3/4] Switched ~ -> $HOME

---
 setup/install-gpu.sh | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/setup/install-gpu.sh b/setup/install-gpu.sh
index 399009710..8c8c7ed41 100755
--- a/setup/install-gpu.sh
+++ b/setup/install-gpu.sh
@@ -48,7 +48,7 @@ sudo cp include/* /usr/local/cuda/include/
 
 jupyter notebook --generate-config
 jupass=`python -c "from notebook.auth import passwd; print(passwd())"`
-echo "c.NotebookApp.password = u'"$jupass"'" >> ~/.jupyter/jupyter_notebook_config.py
+echo "c.NotebookApp.password = u'"$jupass"'" >> $HOME/.jupyter/jupyter_notebook_config.py
 echo "c.NotebookApp.ip = '*'
-c.NotebookApp.open_browser = False" >> ~/.jupyter/jupyter_notebook_config.py
+c.NotebookApp.open_browser = False" >> $HOME/.jupyter/jupyter_notebook_config.py
 mkdir nbs

From 8bde06a35b8b0e4cc78f9c93879badd4783868bc Mon Sep 17 00:00:00 2001
From: Richard Gill <richard@rgill.co.uk>
Date: Wed, 4 Jan 2017 09:16:31 +0000
Subject: [PATCH 4/4] Fixed mistakes

---
 setup/install-gpu.sh | 5 +----
 1 file changed, 1 insertion(+), 4 deletions(-)

diff --git a/setup/install-gpu.sh b/setup/install-gpu.sh
index 8c8c7ed41..20ac7e0d7 100755
--- a/setup/install-gpu.sh
+++ b/setup/install-gpu.sh
@@ -25,11 +25,8 @@ echo "[global]
 device = gpu
 floatX = float32
 
-[lib]
-cnmem=.75
-
 [cuda]
-root = /usr/local/cuda" > ~/.theanorc1
+root = /usr/local/cuda" > ~/.theanorc
 
 pip install keras
 mkdir ~/.keras