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changelog.md

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Changelog

Latest version 2.10.8

2024

  • [changed] Less log messages
  • [added] export of masks from COCO annotation files in devel

2.10

  • [Added] Read by url
  • [Added] Export masks from COCO annotation files

2.9

  • [Changed] Dicom files uint are stored directly. The int dtype in 3D can be stored with intercept in metadata.
  • [Added] Nifti support for '.ni.gz' extension

2.6

  • [Added] Orientation codes support
  • [Added] Data can be accessed by the property (e.g. datap.data3d)

2.5

  • [Added] read_dataset() allow to read different datasets in the same way
  • [Changed] join_path return Path object as default
  • [Added] Datasets are now stored in datasets.csv on github
  • [Fixed] Deprecation Warning on get_slice_location()

2.4

  • [Fixed] Shortest specific path now works

2.3

  • [Changed] Relative dataset download path implementation
  • [Added] URL can be used to download data
  • [Added] Specific dataset can be stored in different path (download is in plan todo)

2.2

  • [Changed] Some data are stored to sample_data instead of sample-data
  • [Changed] Internal representation of dataset dir is now just root (instead ofroot/medical/orig)
  • [Changed] Yaml save cache with safe typ
  • [Added] Crate backup cache file if the old is wrong

2.1

  • [Changed] dependency on actual imma package

2.0

  • [Changed] Python 3 compatibility only
  • [Fixed] mode and order in resize_to_shape function
  • [Fixed] respect new functionality in skimage.transform
  • [Added] New arguments in resize_to_shape function
  • [Added] New tests for seeds
  • [Added] On resize check if all seeds are preserved

1.26.0

  • [Added] New function io3d.datasets.get_labels() for obtaining list of available data

1.25.0

  • [Changed] Checkum is computed on oreder directory (is less system dependent)

1.24.0

  • [Changed] Compact checksumlog. Added hash for ircad

1.22.0

  • [Added] Control over relative download directory for every dataset

1.21.1

  • [Changed] Dataset SCP003 splited into image data and annotation

1.21.0

  • [Added] New sample data SCP003

1.20.0

  • [Changed] Save all types acceptable by json to hdf5

1.19.0

  • [Changed] Accept None type i hdf5 export

1.18.0

  • [Changed] Not-string like keys supported in hdf5

1.17.0 (2018-12-10)

  • [Added] File format h5 supported

1.16.0 (2018-12-10)

  • [Added] Reading patient name, id, age and sex
  • [Added] Display patient's info in qt widget

1.15.0

  • [Changed] If file exists the new file name is created which does not collide with Study ID

1.14.0

  • [Added] Guess series number for automatic liver processing

1.13.0

  • [Changed] Logging in dataset more verbatim

1.12.0

  • [Added] Slice data added to datasets

1.11.0

  • datasets.join_path can return datasets root path
  • pydicom warnings are supressed

1.8.0

  • New function for removing files

1.7.0

  • New distance segmentation function

1.6.1

  • New dataset generate function with synthetic liver and portal vein
  • Rotation works now with interpolation order = 1

1.5.2

  • Test and first development on File System Browser

1.5.1

  • Logger for dicom_expected flag

1.5.0

  • Added dicom_expected flag to prevent warning

1.4.4

  • Directory information is returned in pandas dataframe
  • New sample generator - face

1.4.3

  • Fixed warnings
  • Updated requirements

1.4.0

  • Datasets update
  • New pklz write test
  • Fixed SimpleITK version issues

1.3.49

  • Datasets moved to other server

1.3.48

  • Filter doubled files

1.3.47

  • Memory error fixed

1.3.44 2018-05-14

  • PyQt4 QString compatibility with python 2 and python 3

1.3.43

  • Better code climate with PEP8 fixes

1.3.40

  • GUI Qt4 bytes type compatibility with python 2 and python 3

1.3.38

  • New download function for datasets

1.3.36

  • Object pickle algorithm compatible with python 2 and python 3