DESCRIPTION

Package: scatools
Title: scATAC Tools and Utilities For Copy Number Analysis
Version: 0.1.2.9000
Authors@R: 
    person("Matthew", "Zatzman", , "matthew.zatzman@gmail.com", role = c("aut", "cre"))
Description: A collection of useful code for handling scATAC data.
License: MIT + file LICENSE
URL: https://github.com/mjz1/scatools, https://mjz1.github.io/scatools/
BugReports: https://github.com/mjz1/scatools/issues
Depends: 
    R (>= 4.0),
    SingleCellExperiment
Imports: 
    BiocGenerics,
    BiocParallel,
    circlize,
    ComplexHeatmap,
    data.table,
    DNAcopy,
    dplyr,
    DropletUtils,
    EnsDb.Hsapiens.v86,
    GenomeInfoDb,
    GenomicFeatures,
    GenomicRanges,
    GGally,
    ggplot2,
    glue,
    gtools,
    HMMcopy,
    igraph,
    IRanges,
    janitor,
    leidenbase,
    logger,
    magrittr,
    MASS,
    Matrix,
    MatrixGenerics,
    mclust,
    methods,
    mltools,
    patchwork,
    pbmcapply,
    polynom,
    purrr,
    quantreg,
    readr,
    reshape2,
    rtracklayer,
    S4Vectors,
    scales,
    scater,
    scuttle,
    Seurat,
    sparseMatrixStats,
    stats,
    stringr,
    SummarizedExperiment,
    tibble,
    tidyr,
    utils,
    vcfR,
    vegan,
    withr
Suggests: 
    anndata,
    BSgenome,
    BSgenome.Hsapiens.UCSC.hg38,
    dittoSeq,
    HGC,
    knitr,
    rmarkdown,
    zellkonverter
VignetteBuilder: 
    knitr
biocViews:
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1