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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export("%>%")
export(EM2)
export(add_gc_cor)
export(add_hmmcopy)
export(bin_atac_frags)
export(bin_snp_data)
export(bin_snp_data2)
export(bind_sublist)
export(calc_ai)
export(calc_allelic)
export(calc_clonal_diversity)
export(calc_cnv_score)
export(calc_snn_specificity)
export(cloneCnaHeatmap)
export(cluster_seurat)
export(cnaHeatmap)
export(correct_atac_bias)
export(disjoint_bins_map)
export(do_qc)
export(filter_sce)
export(gc_cor_modal)
export(gc_modal_qc_filter)
export(get_assay_dat)
export(get_blacklist)
export(get_chr_arm_bins)
export(get_f_idx)
export(get_gene_copy)
export(get_snp_bidx)
export(get_snp_counts)
export(get_tiled_bins)
export(grab_hmm_res)
export(hmmcopy_singlecell)
export(identify_normal)
export(integrate_segments)
export(leiden_wrapper)
export(load_atac_bins)
export(logNorm)
export(logr_col_fun)
export(merge_segments)
export(overlap_genes)
export(params_sc_hmm)
export(perform_gc_cor)
export(phase_snps)
export(plot_cell_cna)
export(plot_cell_multi)
export(plot_cell_psuedobulk_cna)
export(plot_clone_comp)
export(plot_gene_cna)
export(plot_segs)
export(pseudo_groups)
export(pseudo_join)
export(pseudobulk_sce)
export(read_vartrix)
export(rebin_sce)
export(run_scatools)
export(scale_sub)
export(segment_cnv)
export(smooth_counts)
export(summarise_chr_arm)
import(SingleCellExperiment)
importFrom(BiocParallel,bplapply)
importFrom(Matrix,t)
importFrom(S4Vectors,mcols)
importFrom(SummarizedExperiment,"assay<-")
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assays)
importFrom(magrittr,"%>%")
importFrom(methods,as)
importFrom(methods,is)
importFrom(stats,acf)
importFrom(stats,ansari.test)
importFrom(stats,approx)
importFrom(stats,as.dist)
importFrom(stats,cor)
importFrom(stats,end)
importFrom(stats,filter)
importFrom(stats,hclust)
importFrom(stats,kmeans)
importFrom(stats,loess)
importFrom(stats,lowess)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,na.pass)
importFrom(stats,nobs)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(stats,start)
importFrom(stats,var)
importFrom(stats,weighted.mean)
importFrom(stats,wilcox.test)
importFrom(utils,read.table)
importFrom(utils,write.table)