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Commits on Jan 12, 2021

• fixed README.rst

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• various cleanups, among others for better conda / Docker building

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• fix in the fluorescence handling

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• Happy new year

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Commits on Sep 22, 2020

• Merge branch 'master' into development

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Commits on Apr 27, 2020

• some more crash handling in agt mode

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• fixes for wrong fluorescence handling in agt mode

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• fix broken agt mode for non-fluorescence files

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Commits on Apr 20, 2020

• changed Docker build process: build conda package locally, and install it

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• added meta.yaml for conda builds (from the local source)

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• fixed rST README

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Commits on Apr 9, 2020

• added length and fluorescence output per timepoint for agt mode

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Commits on Apr 8, 2020

• agt mode: fixed two bugs

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Commits on Apr 7, 2020

• first steps for fluorescences in (advanced) ground truth mode

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• added three new outputs per fluorescence per cell _raw_{min,max,median}

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Commits on Mar 24, 2020

• removed local image reading, used pilyso-io instead

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Commits on Mar 23, 2020

• oups, fixed a silly bug in agt

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• removed old, bundled czifile version, switched to use current PyPI/conda czifile

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Commits on Mar 17, 2020

• Added experimental cell elongation rate GT mode

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• Added maximum permissible angle for rot. detection

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• Added file name input for GT output.

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• updated year from 2019 to 2020

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Commits on Jan 14, 2020

• made a step in the channel detection more configurable

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Commits on Sep 16, 2019

• unified matplotlib setup, hopefully fixing a bug under osx

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Commits on Sep 6, 2019

• Merge pull request #6 from csachs/travis_changes

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• Changed Travis configuration

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• update test outputs to match numpy's new outputs

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• fixed license texts so github can properly detect the license

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• updated documentation configuration

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• added missing figures to documentation

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• migrated Docker image to smaller miniconda+alpine base

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• fixed usage of TkAgg backend in interactive modes

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• made the tiff io part more resilient to different tiffile versions

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• mitigated changes in numpy.set_printoptions

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Commits on Mar 12, 2019

• Bumped version

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