Uncovering the genetic potential for exopolysaccharide synthesis in activated sludge bacteria by genome-resolved metagenomic

Code for the analysis and visualisation in the article.

The proximity filtration is performed from /main.R, which calls upon /scripts/proximity_filtration.R and /scripts/plot_operon.R.

Visualitation of HQ-MAG tree annotated with results is performed with /scripts/GQ_MAG_tree.R.

Shell commands for PSI-BLAST and interproscan can be found in /scripts/shell/.