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Commits on Jan 27, 2025

• Plot SD instead of CI for titer plots

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  huddlej

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• Update titer references and subclades for plots

  huddlej

  committed
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• Merge pull request #203 from nextstrain/fauna-prioritized-seqs

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  joverlee521

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• Merge pull request #205 from nextstrain/upload-concurrency

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Commits on Jan 25, 2025

• Update proposed subclades

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  huddlej

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• Fix typo in new H1 subclade

  huddlej

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Commits on Jan 24, 2025

• Add concurrency restriction to upload GH Action

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  joverlee521

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• Move profiles/upload/*/*/prioritized_seqs_file.tsv to config/*

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  joverlee521

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• _get_prioritized_seqs_file: Remove return conditional

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• Add prioritized seqs for Croatia/10136RV

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Commits on Jan 23, 2025

• Update H1 HA subclade colors

  huddlej

  committed
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Commits on Jan 22, 2025

• Merge pull request #204 from nextstrain/update-dc-27

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  joverlee521

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• Add prioritized seqs for DC/27 and Croatia/10136RV

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  committed
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• profiles/upload: Add prioritized_seqs_file to config

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  joverlee521

  committed
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• download_from_fauna: Add --prioritized_seqs_file option

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  joverlee521

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• Update DistrictofColumbia/27 to DistrictOfColumbia/27

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Commits on Jan 17, 2025

• Exclude another H3 outlier with excess gaps

  huddlej

  committed
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• Update min dates for reporting

  huddlej

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• Update colors for proposed subclades

  huddlej

  committed
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• Exclude H3 HA sequences that don't translate well

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  huddlej

  committed
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Commits on Jan 13, 2025

• Merge pull request #202 from nextstrain/limit-concurrent-fauna

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  joverlee521

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Commits on Jan 11, 2025

• Remove message directive from download_sequences

  joverlee521

  committed
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Commits on Jan 10, 2025

• Limit concurrent fauna connections to 2

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  joverlee521

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Commits on Jan 4, 2025

• nextclade: switch IQ tree to pathogen mode, add H3 includes

  rneher

  committed
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Commits on Jan 3, 2025

• add gishn_samples to europe builds

  rneher

  committed
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Commits on Jan 2, 2025

• Update colors for H3N2 proposed subclades

  huddlej

  committed
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Commits on Dec 17, 2024

• Merge pull request #200 from nextstrain/gishn-strains

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  joverlee521

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• annotate_metadata_with_gihsn: mark output as temp()

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  joverlee521

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• Merge pull request #198 from nextstrain/gishn-strains

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  joverlee521

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• Add colors for newly proposed subclades

  huddlej

  committed
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Commits on Dec 13, 2024

• Update clades to plot for H1 and H3, refs for H3

  huddlej

  committed
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• Update H3 and Vic titer references for plots

  huddlej

  committed
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Commits on Dec 11, 2024

• Update H3N2 outliers

  trvrb

  committed
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• Remove extraneous "e"

  huddlej

  committed
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• Correct vaccine strains for 2025

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  huddlej

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