README.Rmd

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output: github_document
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<!-- README.md is generated from README.Rmd. Please edit that file -->

# dynverse

**dynverse** is created to support the development, execution, and benchmarking of trajectory inference methods. Check out our preprint on bioRxiv:

Wouter Saelens\*, Robrecht Cannoodt\*, Helena Todorov, Yvan Saeys. “A comparison of single-cell trajectory inference methods: towards more accurate and robust tools”. bioRxiv (Mar. 2018). DOI: [10.1101/276907](https://doi.org/10.1101/276907).

\*: Equal contribution

dynverse consists of several subpackages:

```{r, echo = FALSE, warning=FALSE, error=FALSE, message = FALSE}
library(tidyverse)
df <- tribble(
  ~Repo, ~Description,
  "dynalysis", "Scripts to reproduce manuscript",
  "dynwrap", "Common wrapping functionality",
  "dynmethods", "Wrappers for trajectory inference methods",
  "dyneval", "Metrics and evaluation pipeline",
  "dyngen", "Generator of synthetic datasets",
  "dynnormaliser", "Common normalisation functionality",
  "dyntoy", "Quick generator of small toy datasets",
  "dynplot", "Common visualisation functionality",
  "dynutils", "Various common functions"
) %>% 
  mutate(
    Package = glue::glue("[{Repo}](https://github.com/dynverse/{Repo})"),
    Status = ifelse(Repo %in% c("dynwrap", "dynmethods", "dynplot", "dynutils", "dynnormaliser", "dyntoy"), glue::glue("[![Build status](https://travis-ci.org/dynverse/{Repo}.svg?branch=master)](https://travis-ci.org/dynverse/{Repo})"), "Coming soon")
  ) %>% 
  select(Package, Status, Description)
knitr::kable(df)

```