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README.Rmd

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All of these packages were developed as part of a benchmarking study available on [bioRxiv](https://doi.org/10.1101/276907). All source code has been made available in the [dynbenchmark](https://github.com/dynverse/dynbenchmark) repository.
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Wouter Saelens\*, Robrecht Cannoodt\*, Helena Todorov, Yvan Saeys. “A comparison of single-cell trajectory inference methods: towards more accurate and robust tools”. bioRxiv (Mar. 2018). DOI: [10.1101/276907](https://doi.org/10.1101/276907).
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> A comparison of single-cell trajectory inference methods: towards more accurate and robust tools
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<strong> Wouter Saelens\* </strong> <a href='https://orcid.org/0000-0002-7114-6248'><img src='https://github.com/dynverse/dynmethods/raw/master/man/figures/orcid_logo.svg?sanitize=true' height='16'></a> <a href='https://github.com/zouter'><img src='https://github.com/dynverse/dynmethods/raw/master/man/figures/github_logo.png' height='16'></a>,
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<strong> Robrecht Cannoodt\* </strong> <a href='https://orcid.org/0000-0003-3641-729X'><img src='https://github.com/dynverse/dynmethods/raw/master/man/figures/orcid_logo.svg?sanitize=true' height='16'></a> <a href='https://github.com/rcannood'><img src='https://github.com/dynverse/dynmethods/raw/master/man/figures/github_logo.png' height='16'></a>,
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Helena Todorov <a href='https://github.com/Helena-todd'><img src='https://github.com/dynverse/dynmethods/raw/master/man/figures/github_logo.png' height='16'></a>,
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<em> Yvan Saeys </em> <a href='https://github.com/saeyslab'><img src='https://github.com/dynverse/dynmethods/raw/master/man/figures/github_logo.png' height='16'></a>
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[bioRxiv:276907](https://www.biorxiv.org/content/early/2018/03/05/276907) [doi:10.1101/276907](https://doi.org/10.1101/276907)
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\*: Equal contribution
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README.md

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has been made available in the
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[dynbenchmark](https://github.com/dynverse/dynbenchmark) repository.
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Wouter Saelens\*, Robrecht Cannoodt\*, Helena Todorov, Yvan Saeys. “A
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comparison of single-cell trajectory inference methods: towards more
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accurate and robust tools”. bioRxiv (Mar. 2018). DOI:
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[10.1101/276907](https://doi.org/10.1101/276907).
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> A comparison of single-cell trajectory inference methods: towards more
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> accurate and robust tools
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> <strong> Wouter Saelens\* </strong>
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> <a href='https://orcid.org/0000-0002-7114-6248'><img src='https://github.com/dynverse/dynmethods/raw/master/man/figures/orcid_logo.svg?sanitize=true' height='16'></a>
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> <a href='https://github.com/zouter'><img src='https://github.com/dynverse/dynmethods/raw/master/man/figures/github_logo.png' height='16'></a>,
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> <strong> Robrecht Cannoodt\* </strong>
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> <a href='https://orcid.org/0000-0003-3641-729X'><img src='https://github.com/dynverse/dynmethods/raw/master/man/figures/orcid_logo.svg?sanitize=true' height='16'></a>
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> <a href='https://github.com/rcannood'><img src='https://github.com/dynverse/dynmethods/raw/master/man/figures/github_logo.png' height='16'></a>,
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> Helena Todorov
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> <a href='https://github.com/Helena-todd'><img src='https://github.com/dynverse/dynmethods/raw/master/man/figures/github_logo.png' height='16'></a>,
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> <em> Yvan Saeys </em>
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> <a href='https://github.com/saeyslab'><img src='https://github.com/dynverse/dynmethods/raw/master/man/figures/github_logo.png' height='16'></a>
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> [bioRxiv:276907](https://www.biorxiv.org/content/early/2018/03/05/276907)
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> [doi:10.1101/276907](https://doi.org/10.1101/276907)
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\*: Equal contribution
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The **[dyno](https://github.com/dynverse/dyno)** package offers
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**end-users** a complete TI pipeline. It features:
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- a uniform interface to 57 [TI
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- a uniform interface to 59 [TI
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methods](https://github.com/dynverse/dynmethods#list-of-included-methods),
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- an [interactive guideline
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tool](https://github.com/dynverse/dyno#selecting-the-most-optimal-ti-methods)

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