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Commits on Dec 20, 2019

• bumped max pandas version to match qiime2-2019.10

  gavinmdouglas

  committed
  8a2e3df

• Merge pull request picrust#110 from picrust/2.3.0

  Show description for da48c46
  gavinmdouglas

  authored
  da48c46

Commits on Dec 19, 2019

• cleaned up script docs

  gavinmdouglas

  committed
  e16d195

• Added upperbound on pandas version due to system time increases

  gavinmdouglas

  committed
  d3c8721

• separated code for checking alignments and added test

  gavinmdouglas

  committed
  858b68f

• Edited gitignore

  gavinmdouglas

  committed
  2e68028

• create output dir after running initial sanity checks

  gavinmdouglas

  committed
  fd94144

Commits on Dec 18, 2019

• made gc calls invisible

  gavinmdouglas

  committed
  df2cfd4

• made garbage collection silent

  gavinmdouglas

  committed
  c7f3788

• dont output pathway_pipeline stdout

  gavinmdouglas

  committed
  c862e8d

• moved bioconda up in channels

  gavinmdouglas

  committed
  29c70f2

Commits on Dec 17, 2019

• added check for space in input FASTA filepath and throw error if found (causes problems for downstream tools)

  gavinmdouglas

  committed
  f6fa34b

• clarified log msg

  gavinmdouglas

  committed
  3c7e3d3

• import argparse for custom type

  gavinmdouglas

  committed
  d69a136

• minor changes to match verbosity changes

  gavinmdouglas

  committed
  312763b

• added clearer options for printing subprocess stderr and stdout and custom float

  gavinmdouglas

  committed
  6faf0e7

• added mixed int / float seqids to add description test

  gavinmdouglas

  committed
  c64c785

• Created testfiles with seqids of mixed floats/ints to make sure they are treated as str

  gavinmdouglas

  committed
  0c6107f

• added extra step when reading in tables to ensure index is treated as str

  gavinmdouglas

  committed
  c65a531

• updated gappa command syntax

  gavinmdouglas

  committed
  ee48f76

• changed next version to be 2.3.0

  gavinmdouglas

  committed
  2ceaeae

Commits on Dec 13, 2019

• bumped copyright year

  gavinmdouglas

  committed
  9bdea2d

• removed unnecessary gitignore lines

  gavinmdouglas

  committed
  9d5184e

• Bumped version to 2.2.1-b

  gavinmdouglas

  committed
  41483c1

Commits on Dec 9, 2019

• bumped epa-ng version to 0.3.6

  gavinmdouglas

  committed
  c45b222

• bumped to gappa 0.5.1

  gavinmdouglas

  committed
  0f9b8ab

• bumped r-castor to latest and set hmmer version range

  gavinmdouglas

  committed
  5d10a9e

Commits on Jul 26, 2019

• Merge pull request picrust#96 from picrust/2.2.0

  Show description for d0f0401
  gavinmdouglas

  authored
  d0f0401

• Minor doc changes

  gavinmdouglas

  committed
  cda43a9

• Add warning when fewer than 50% of ids overlap between metagenome_pipeline.py input files

  gavinmdouglas

  committed
  668de62

• fill 0s for NaN in weighted NSTI and sort unstrat per seq table

  gavinmdouglas

  committed
  aa37bdf

• Specify that label overlaps are for index

  gavinmdouglas

  committed
  0f06518

Commits on Jul 25, 2019

• Order samples consistently in unstrat per seq contrib pathabun file

  gavinmdouglas

  committed
  d6d6300

• Changed seqabun table to be float and fixed metagenome pipeline tests

  gavinmdouglas

  committed
  4501db2

Commits on Jul 23, 2019

• Read sequence abundance table as TSV if no biom extension

  gavinmdouglas

  committed
  ecfcad2

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