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@AlphaGenes AlphaGenes

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    22 repositories

    • tinyhouse

      Public
      tinyhouse: Internal (house) functions used across many AlphaGenes tools
      Python
      •6•2•6•0•Updated Oct 8, 2024Oct 8, 2024

    • AlphaPeel

      Public
      AlphaPeel: calling, phasing, and imputing genotype and sequence data in pedigrees
      Roff
      •
      MIT License
      •11•2•79•3•Updated Sep 26, 2024Sep 26, 2024

    • AlphaImpute2

      Public
      AlphaImpute2: pedigree- and population-based genotype imputation
      Python
      •
      MIT License
      •6•11•11•0•Updated Sep 5, 2024Sep 5, 2024

    • AlphaFamImpute

      Public
      Python
      •
      MIT License
      •2•2•6•0•Updated Jun 11, 2024Jun 11, 2024

    • AlphaSimR

      Public
      R package for breeding program simulations
      R
      •
      Other
      •18•0•0•0•Updated May 4, 2024May 4, 2024

    • AlphaPart

      Public
      AlphaPart implements a method for partitioning genetic trends to quantify the sources of genetic gain in breeding programmes
      R
      •3•0•3•0•Updated Dec 16, 2023Dec 16, 2023

    • AlphaPlantImpute2

      Public
      AlphaPlantImpute2: Genotype imputation for plant populations
      Python
      •
      MIT License
      •3•6•4•0•Updated Jul 5, 2023Jul 5, 2023

    • AlphaAssign

      Public
      Roff
      •
      MIT License
      •2•2•4•0•Updated Jul 5, 2023Jul 5, 2023

    • AlphaCMakeFiles

      Public
      CMake
      •1•0•0•0•Updated Feb 12, 2023Feb 12, 2023

    • AlphaHouse

      Public
      Fortran
      •1•0•0•0•Updated Feb 12, 2023Feb 12, 2023

    • AlphaPhase-doc

      Public
      Python
      •1•0•0•0•Updated Feb 12, 2023Feb 12, 2023

    • AlphaImpute-docs

      Public
      TeX
      •1•0•0•0•Updated Feb 12, 2023Feb 12, 2023

    • ferdosi

      Public
      Fortran
      •1•0•0•0•Updated Feb 12, 2023Feb 12, 2023

    • AlphaHmm

      Public
      Fortran
      •1•0•0•0•Updated Feb 12, 2023Feb 12, 2023

    • AlphaRecode

      Public
      Makefile
      •1•0•0•0•Updated Feb 12, 2023Feb 12, 2023

    • AlphaFamSeq

      Public
      Fortran
      •1•0•0•0•Updated Feb 12, 2023Feb 12, 2023

    • AlphaImpute

      Public
      Fortran
      •
      MIT License
      •1•1•0•0•Updated Feb 12, 2023Feb 12, 2023

    • AlphaPeel-Fortran

      Public
      Fortran
      •
      MIT License
      •1•0•0•0•Updated Feb 12, 2023Feb 12, 2023

    • AlphaPhase

      Public
      Fortran
      •
      MIT License
      •1•2•0•0•Updated Feb 12, 2023Feb 12, 2023

    • AlphaMate

      Public
      Fortran
      •3•4•0•0•Updated Feb 12, 2023Feb 12, 2023

    • AlphaRelate

      Public
      Fortran
      •1•0•0•0•Updated Feb 12, 2023Feb 12, 2023

    • AlphaBayes

      Public
      Fortran
      •
      MIT License
      •1•0•0•0•Updated Feb 12, 2023Feb 12, 2023