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@aiproteins AI Proteins

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    18 repositories

    • chai-lab

      Public
      Chai-1, SOTA model for biomolecular structure prediction
      Python
      •
      Apache License 2.0
      •195•0•0•0•Updated Jan 29, 2025Jan 29, 2025

    • boltz

      Public
      Official repository for the Boltz-1 biomolecular interaction model
      Python
      •
      MIT License
      •197•0•0•0•Updated Jan 7, 2025Jan 7, 2025

    • Protenix

      Public
      A trainable PyTorch reproduction of AlphaFold 3.
      Python
      •
      Apache License 2.0
      •80•0•0•0•Updated Dec 13, 2024Dec 13, 2024

    • BindCraft

      Public
      User friendly and accurate binder design pipeline
      Python
      •
      MIT License
      •83•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • ThermoMPNN-D

      Public
      Extension of ThermoMPNN for double mutant predictions
      Python
      •
      MIT License
      •7•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • RFdiffusion

      Public
      Code for running RFdiffusion
      Python
      •
      Other
      •377•0•0•0•Updated Sep 6, 2024Sep 6, 2024

    • PTMGPT2

      Public
      GPT-based protein language model for PTM site prediction
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Aug 11, 2024Aug 11, 2024

    • PeptideModels

      Public
      Code for peptide ligand design with machine learning models.
      Python
      •
      Apache License 2.0
      •6•0•0•0•Updated May 17, 2024May 17, 2024

    • _2023_Pesce_IDPdesign

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Apr 15, 2024Apr 15, 2024

    • RoseTTAFold-All-Atom

      Public
      Python
      •
      Other
      •123•0•0•0•Updated Mar 14, 2024Mar 14, 2024

    • rf_diffusion_all_atom

      Public
      Public RFDiffusionAA repo
      Python
      •
      Other
      •58•1•0•0•Updated Mar 14, 2024Mar 14, 2024

    • ThermoMPNN

      Public
      GNN trained to predict changes in thermodynamic stability for protein point mutants
      Python
      •
      MIT License
      •23•0•0•0•Updated Mar 11, 2024Mar 11, 2024

    • LigandMPNN

      Public
      Python
      •
      MIT License
      •53•0•0•0•Updated Jan 23, 2024Jan 23, 2024

    • protein_generator

      Public
      Joint sequence and structure generation with RoseTTAFold sequence space diffusion
      Python
      •
      MIT License
      •47•0•0•0•Updated Aug 31, 2023Aug 31, 2023

    • RoseTTAFold2

      Public
      Python
      •
      MIT License
      •39•0•0•0•Updated Jul 3, 2023Jul 3, 2023

    • RoseTTAFold2NA

      Public
      RoseTTAFold2 protein/nucleic acid complex prediction
      Python
      •
      MIT License
      •77•0•0•0•Updated Jun 30, 2023Jun 30, 2023

    • ProteinMPNN

      Public
      Code for the ProteinMPNN paper
      Jupyter Notebook
      •
      MIT License
      •325•0•0•0•Updated Jun 27, 2023Jun 27, 2023

    • DSBPredict

      Public
      Python
      •
      MIT License
      •4•0•0•0•Updated May 23, 2022May 23, 2022