Skip to content

@epimath EpiMath

Change the repository type filter

All

    Repositories list

    16 repositories

    • mipalettes

      Public
      R package for color palettes related to MI Umbrella and other pandemic response projects
      R
      •1•0•0•0•Updated Oct 28, 2023Oct 28, 2023

    • norovirus_gii_wastewater_monitoring

      Public
      for Norovirus GII wastewater monitoring for epidemiological surveillance
      HTML
      •1•0•0•0•Updated Oct 16, 2023Oct 16, 2023

    • comm_wander_plot

      Public
      R
      •1•0•0•0•Updated May 15, 2023May 15, 2023

    • BAIT_software

      Public
      Biofilm Architecture Inference Tool
      MIT License
      •0•1•0•0•Updated Apr 30, 2023Apr 30, 2023

    • vaxx_maps_anyone

      Public
      R
      •2•0•0•0•Updated Oct 25, 2022Oct 25, 2022

    • epid-814-materials

      Public
      Class Materials for Epid 814
      HTML
      •3•5•0•0•Updated Dec 2, 2021Dec 2, 2021

    • age-pde-identifiability

      Public
      Mathematica
      •
      MIT License
      •0•0•0•0•Updated Oct 21, 2021Oct 21, 2021

    • cm-dag

      Public
      Code for the compartmental model/DAG project.
      R
      •
      MIT License
      •1•1•0•0•Updated Oct 7, 2019Oct 7, 2019

    • Hepatitis-C-in-Young-PWID

      Public
      Code for: Gicquelais RE, Foxman B, Coyle J, Eisenberg MC. (2019). Hepatitis C transmission in young people who inject drugs: insights using a dynamic model informed by state public health surveillance. Epidemics. https://doi.org/10.1016/j.epidem.2019.02.003
      R
      •
      MIT License
      •0•2•0•0•Updated Mar 21, 2019Mar 21, 2019

    • joint-genital-sero-HPV-model

      Public
      Code for "Integrating measures of viral prevalence and seroprevalence: a mechanistic modeling approach to explaining cohort patterns of HPV in women in the U.S." (Brouwer, Meza, Eisenberg, 2019)
      R
      •
      MIT License
      •0•1•0•0•Updated Feb 10, 2019Feb 10, 2019

    • param-estimation-SIR

      Public
      Example R, Python, and Matlab code for ML estimation with an SIR model, as well as for examining identifiability and uncertainty using the Fisher information matrix and profile likelihoods.
      R
      •
      MIT License
      •20•32•0•0•Updated Feb 10, 2019Feb 10, 2019

    • gravity-model-ebola

      Public
      Code for the Ebola spatial modeling project.
      MATLAB
      •1•3•0•0•Updated May 3, 2018May 3, 2018

    • sFIM-param-reduction

      Public
      Identifiability, active subspaces, and parameter reduction using the sensitivity FIM
      R
      •0•2•0•0•Updated Feb 28, 2018Feb 28, 2018

    • dengue_model

      Public
      dengue transmission model project
      Python
      •0•2•0•0•Updated Aug 12, 2017Aug 12, 2017

    • bwf-pup-itims-2017

      Public
      BWF PUP iTIMS Workshop - exercise notebook files
      HTML
      •
      MIT License
      •1•2•0•0•Updated Aug 11, 2017Aug 11, 2017

    • cholera-distinguishability

      Public
      Code for cholera model comparison and distinguishability project.
      MATLAB
      •
      MIT License
      •0•2•0•0•Updated Jun 22, 2017Jun 22, 2017