The Snakemake-Workflows project

The Snakemake-workflows project is a joint effort to create workflows for common use cases of the Snakemake workflow management system. Snakemake-workflows has just started, and we are still in the phase to determine policies and best practices.

Workflows

A list of all available workflows that are currently in development can be found here.

Approved workflows

The following workflows have undergone a strict review and quality control process and are ready for production.

Workflow	Domain	Authors

Documentation

Join the team

Once the initiators have agreed on the procedure, it will be possible to join the team here.

Contribute

Contributing is easy:

1. Join the team
2. Create a new repository for your workflow
3. Ensure that your workflow meets our guidelines.
4. Request a review here.

Guidelines

1. A workflow repository shall consist of one Snakemake workflow.
2. The structure of the workflow should follow our skeleton.
3. Whenever possible, Snakemake wrappers should be used.
4. The workflow should be configurable via a well documented YAML-based configuration file and (when necessary) a sample sheet.
5. The workflow has to define an (integration-style) test case that is configured via the .travis.yml file in the skeleton.