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Commits on May 11, 2017

• Disable stacktrace support for older gcc versions. Report version of the compiler being used. Issue marbl#477.

  brianwalenz

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  b69f212

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Commits on May 10, 2017

• For Torque, set gridEngineArrayMaxJobs based on qmgr reported value for max_job_array_size. Issue marbl#461.

  brianwalenz

  committed
  48b8c0a

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• Report and fail when tigs fail to load correctly. Issue marbl#483.

  brianwalenz

  committed
  40bfeb8

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• Don't place orphan reads back into the orphan they came from. Possibly issue marbl#434.

  brianwalenz

  committed
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Commits on May 9, 2017

• If READLEN_BITS is 24 or greater, use a bigger overlap struct.

  brianwalenz

  committed
  700032e

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• Increase size of read metadata from 32 to 64 bits, to allow for longer reads.

  brianwalenz

  committed
  8ca485a

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• Add values for AS_MAX_READLEN_BITS 23 and 24. Issue marbl#478.

  brianwalenz

  committed
  5deaa3e

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• Build a better template for better consensus contiguity.

  brianwalenz

  committed
  1e76077

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• Assert that edlibAlign() lengths are positive.

  brianwalenz

  committed
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• Increase AS_UTL_readLine() initial line size, fix potential out of bounds.

  brianwalenz

  committed
  7d0c15e

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• Check for algorithm on command line.

  brianwalenz

  committed
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• Add -threads to command line help.

  brianwalenz

  committed
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• Replace 'unitig' with 'tig' in help, comments, logging.

  brianwalenz

  committed
  b6149bf

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• Don't change the directory for alignGFA if not on grid. Issue marbl#485.

  brianwalenz

  committed
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Commits on May 3, 2017

• Allow extra space >max read length if we are correcting a read == max read length this was causing a crash (issue marbl#478)

  skoren

  committed
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Commits on Apr 26, 2017

• Standardize making scripts executable. Issue marbl#459.

  brianwalenz

  committed
  63ce8ba

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Commits on Apr 22, 2017

• Update index.rst

  skoren

  authored
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Commits on Apr 20, 2017

• Update README.md

  skoren

  authored
  3d8a192

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• Update README.md

  skoren

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  1b8974d

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• Update README.citation

  skoren

  authored
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• Operate off the release tarball, not git.

  brianwalenz

  committed
  7e2da52

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• Add mhap filtering options to the list of options settable without a tag (e.g. mhapFilterUnique auto sets corMhapFilterUnique,obt, and utg).

  skoren

  committed
  f75deef

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• Add span request by default to LSF threading (issues marbl#444, marbl#13)

  skoren

  committed
  1339b2c

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• Switch to edlib alignments for consensus from the start, bump up consensus error rate slightly from the overlap error rate

  skoren

  committed
  c3dea7c

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• Pass through minimum overlap length

  skoren

  committed
  b6a8122

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Commits on Apr 17, 2017

• Update faq.rst

  skoren

  authored
  96aad28

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• Bump default version number to 1.5.

  brianwalenz

  committed
  69b5f32

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• Update for the last copyright update.

  brianwalenz

  committed
  9b501b9

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• Update copyrights.

  brianwalenz

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  5ad2434

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• Use strict mode.

  brianwalenz

  committed
  0b7f18e

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• Newline instead of carriage return in log message.

  brianwalenz

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Commits on Apr 13, 2017

• add info that compute nodes must be submit nodes

  skoren

  authored
  723df7c

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• Update conf.py

  skoren

  authored
  07e15ea

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• Update quick-start.rst

  skoren

  authored
  1cb9106

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• Unoffset all adjusted error values by one.

  brianwalenz

  committed
  4f7d819

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