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Commits on Jul 20, 2023

• Update README.md

  kad-ecoli

  authored
  0d2f660

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Commits on Dec 5, 2022

• Update README.md

  kad-ecoli

  authored
  76f06f4

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• Update README.md

  kad-ecoli

  authored
  ad66244

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Commits on Jun 26, 2021

• handle longer grep

  

  chengxin zhang

  committed
  967c707

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Commits on Jun 21, 2021

• getTaxonID.pl

  

  chengxin zhang

  committed
  3fd212d

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Commits on Apr 27, 2021

• explain bin and src

  

  chengxin zhang

  committed
  8e432db

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• goal of rMSA

  

  chengxin zhang

  committed
  ffd0298

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Commits on Mar 14, 2021

• fast option

  

  chengxin zhang

  committed
  4db02a5

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Commits on Feb 21, 2021

• add cd-hit-est -c 0.99

  

  chengxin zhang

  committed
  5e3e0c3

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• license of parse_blastn_local.pl

  

  chengxin zhang

  committed
  dcd7606

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• readme for RemoveNonQueryPosition

  

  chengxin zhang

  committed
  894025f

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• forbid domain without any base pair

  

  chengxin zhang

  committed
  9c86c66

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Commits on Feb 20, 2021

• readme for src

  

  chengxin zhang

  committed
  9133cd2

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• detailed readme for FUpred

  

  chengxin zhang

  committed
  838778b

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• discontinous domains

  

  chengxin zhang

  committed
  9a0bb94

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Commits on Feb 19, 2021

• free memory

  

  chengxin zhang

  committed
  fa4881c

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• change O(L^3) complexity to O(L^2) complexity

  

  chengxin zhang

  committed
  19fad53

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Commits on Feb 18, 2021

• FUpred for RNA

  

  chengxin zhang

  committed
  52db914

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Commits on Feb 17, 2021

• fix missing db and duplicated seq name in rcmp style MSA

  

  chengxin zhang

  committed
  f6b087b

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Commits on Feb 14, 2021

• reduce rMSA memory

  

  chengxin zhang

  committed
  d7bd34b

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Commits on Jan 24, 2021

• just one incE for db2

  

  chengxin zhang

  committed
  d6f1010

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Commits on Jan 23, 2021

• explain qnhmmer and qcmsearch

  

  chengxin zhang

  committed
  a663dd5

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Commits on Jan 21, 2021

• remove unused MSA

  

  chengxin zhang

  committed
  59a7f7a

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Commits on Jan 20, 2021

• only 2 evalues

  

  chengxin zhang

  committed
  7ff5b80

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• comment on MSA scoring

  

  chengxin zhang

  committed
  ddc1750

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Commits on Jan 18, 2021

• binaries for contact score

  

  chengxin zhang

  committed
  0e9b243

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• add RNAcmap style MSA

  

  chengxin zhang

  committed
  7080200

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Commits on Jan 10, 2021

• fix rfam

  

  chengxin zhang

  committed
  661a530

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Commits on Dec 24, 2020

• insertion gap in parse_blastn_local.pl

  

  chengxin zhang

  committed
  7ab5029

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• fix pfam2fasta off-by-1 3' terminal

  

  chengxin zhang

  committed
  91a092b

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Commits on Dec 23, 2020

• parse blastn alignments

  

  chengxin zhang

  committed
  bf12bbd

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• cm w/o nhmmer

  

  chengxin zhang

  committed
  be8a89f

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• address too short sequences

  

  chengxin zhang

  committed
  762e442

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Commits on Dec 22, 2020

• rMSA final MSA by Nf

  

  chengxin zhang

  committed
  b4998a3

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Commits on Dec 20, 2020

• allow empty db.gz if no additional hit can be found

  

  chengxin zhang

  committed
  856a79e

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