You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
like above(one slice of a 3d picture)
Is there anything wrong with the parameters?
Here is the .bash file I use. All the .nii file are 3 dimensional picture. 001_Cta.nii is fixed. 2.nii is moved.
~/Greedy/build/greedy -d 3 -a
-i ./CTAs/001_Cta.nii ./CTAs/2.nii
-ia-image-centers
-o affine.mat
-n 100x50x0
-m NCC 2x2x2
I think this happens because any voxels in the in the output that are outside the moving image domain are set to a default value. This is usually 0, but for CT that might not be the right background value. You can change this by adding -rb <value> to your reslicing call.
like above(one slice of a 3d picture)
Is there anything wrong with the parameters?
Here is the .bash file I use. All the .nii file are 3 dimensional picture. 001_Cta.nii is fixed. 2.nii is moved.
~/Greedy/build/greedy -d 3 -a
-i ./CTAs/001_Cta.nii ./CTAs/2.nii
-ia-image-centers
-o affine.mat
-n 100x50x0
-m NCC 2x2x2
~/Greedy/build/greedy -d 3
-rf ./CTAs/001_Cta.nii
-rm ./CTAs/2.nii resliced.nii
-ri LABEL 0.2vox
-r affine.mat
The text was updated successfully, but these errors were encountered: