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spm.m
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function varargout=spm(varargin)
% SPM: Statistical Parametric Mapping (startup function)
%_______________________________________________________________________
% ___ ____ __ __
% / __)( _ \( \/ )
% \__ \ )___/ ) ( Statistical Parametric Mapping
% (___/(__) (_/\/\_) SPM - http://www.fil.ion.ucl.ac.uk/spm/
%_______________________________________________________________________
%
% SPM (Statistical Parametric Mapping) is a package for the analysis
% functional brain mapping experiments. It is the in-house package of
% the Wellcome Trust Centre for Neuroimaging, and is available to the
% scientific community as copyright freeware under the terms of the
% GNU General Public Licence.
%
% Theoretical, computational and other details of the package are
% available in SPM's "Help" facility. This can be launched from the
% main SPM Menu window using the "Help" button, or directly from the
% command line using the command `spm_help`.
%
% Details of this release are available via the "About SPM" help topic
% accessible from the SPM splash screen. See also README.txt.
%
% This spm function initialises the default parameters, and displays a
% splash screen with buttons leading to the PET, fMRI and M/EEG
% modalities. Alternatively, `spm('pet')`, `spm('fmri')`, `spm('eeg')`
% (equivalently `spm pet`, `spm fmri` and `spm eeg`) lead directly to
% the respective modality interfaces.
%
% Once the modality is chosen, (and it can be toggled mid-session) the
% SPM user interface is displayed. This provides a constant visual
% environment in which data analysis is implemented. The layout has
% been designed to be simple and at the same time show all the
% facilities that are available. The interface consists of three
% windows: A menu window with pushbuttons for the SPM routines (each
% button has a 'CallBack' string which launches the appropriate
% function/script); A blank panel used for interaction with the user;
% And a graphics figure with various editing and print facilities (see
% spm_figure.m). (These windows are 'Tag'ged 'Menu', 'Interactive', and
% 'Graphics' respectively, and should be referred to by their tags
% rather than their figure numbers.)
%
% Further interaction with the user is (mainly) via questioning in the
% 'Interactive' window (managed by spm_input), and file selection
% (managed by spm_select). See the help on spm_input.m and spm_select.m for
% details on using these functions.
%
% Arguments to this routine (spm.m) lead to various setup facilities,
% mainly of use to SPM power users and programmers. See programmers
% FORMAT & help in the main body of spm.m
%
%_______________________________________________________________________
% Copyright (C) 1991,1994-2015 Wellcome Trust Centre for Neuroimaging
% Andrew Holmes
% $Id: spm.m 6409 2015-04-16 16:19:38Z guillaume $
%=======================================================================
% - FORMAT specifications for embedded CallBack functions
%=======================================================================
%( This is a multi function function, the first argument is an action )
%( string, specifying the particular action function to take. Recall )
%( MATLAB's command-function duality: `spm Welcome` is equivalent to )
%( `spm('Welcome')`. )
%
% FORMAT spm
% Defaults to spm('Welcome')
%
% FORMAT spm('Welcome')
% Clears command window, deletes all figures, prints welcome banner and
% splash screen, sets window defaults.
%
% FORMAT spm('AsciiWelcome')
% Prints ASCII welcome banner in MATLAB command window.
%
% FORMAT spm('PET') spm('FMRI') spm('EEG')
% Closes all windows and draws new Menu, Interactive, and Graphics
% windows for an SPM session. The buttons in the Menu window launch the
% main analysis routines.
%
% FORMAT spm('ChMod',Modality)
% Changes modality of SPM: Currently SPM supports PET & MRI modalities,
% each of which have a slightly different Menu window and different
% defaults. This function switches to the specified modality, setting
% defaults and displaying the relevant buttons.
%
% FORMAT spm('defaults',Modality)
% Sets default global variables for the specified modality.
%
% FORMAT [Modality,ModNum]=spm('CheckModality',Modality)
% Checks the specified modality against those supported, returns
% upper(Modality) and the Modality number, it's position in the list of
% supported Modalities.
%
% FORMAT Fmenu = spm('CreateMenuWin',Vis)
% Creates SPM menu window, 'Tag'ged 'Menu'
% F - handle of figure created
% Vis - Visibility, 'on' or 'off'
%
% Finter = FORMAT spm('CreateIntWin',Vis)
% Creates an SPM Interactive window, 'Tag'ged 'Interactive'
% F - handle of figure created
% Vis - Visibility, 'on' or 'off'
%
% FORMAT [Finter,Fgraph,CmdLine] = spm('FnUIsetup',Iname,bGX,CmdLine)
% Robust UIsetup procedure for functions:
% Returns handles of 'Interactive' and 'Graphics' figures.
% Creates 'Interactive' figure if ~CmdLine, creates 'Graphics' figure if bGX.
% Iname - Name for 'Interactive' window
% bGX - Need a Graphics window? [default 1]
% CmdLine - CommandLine usage? [default spm('CmdLine')]
% Finter - handle of 'Interactive' figure
% Fgraph - handle of 'Graphics' figure
% CmdLine - CommandLine usage?
%
% FORMAT WS=spm('WinScale')
% Returns ratios of current display dimensions to that of a 1152 x 900
% Sun display. WS=[Xratio,Yratio,Xratio,Yratio]. Used for scaling other
% GUI elements.
% (Function duplicated in spm_figure.m, repeated to reduce inter-dependencies.)
%
% FORMAT [FS,sf] = spm('FontSize',FS)
% FORMAT [FS,sf] = spm('FontSizes',FS)
% Returns fontsizes FS scaled for the current display.
% FORMAT sf = spm('FontScale')
% Returns font scaling factor
% FS - (vector of) Font sizes to scale [default [1:36]]
% sf - font scaling factor (FS(out) = floor(FS(in)*sf)
%
% Rect = spm('WinSize',Win,raw)
% Returns sizes and positions for SPM windows.
% Win - 'Menu', 'Interactive', 'Graphics', or '0'
% - Window whose position is required. Only first character is
% examined. '0' returns size of root workspace.
% raw - If specified, then positions are for a 1152 x 900 Sun display.
% Otherwise the positions are scaled for the current display.
%
% FORMAT [c,cName] = spm('Colour')
% Returns the RGB triple and a description for the current en-vogue SPM
% colour, the background colour for the Menu and Help windows.
%
% FORMAT F = spm('FigName',Iname,F,CmdLine)
% Set name of figure F to "SPMver (User): Iname" if ~CmdLine
% Robust to absence of figure.
% Iname - Name for figure
% F (input) - Handle (or 'Tag') of figure to name [default 'Interactive']
% CmdLine - CommandLine usage? [default spm('CmdLine')]
% F (output) - Handle of figure named
%
% FORMAT Fs = spm('Show')
% Opens all SPM figure windows (with HandleVisibility) using `figure`.
% Maintains current figure.
% Fs - vector containing all HandleVisible figures (i.e. get(0,'Children'))
%
% FORMAT spm('Clear',Finter, Fgraph)
% Clears and resets SPM-GUI, clears and timestamps MATLAB command window.
% Finter - handle or 'Tag' of 'Interactive' figure [default 'Interactive']
% Fgraph - handle or 'Tag' of 'Graphics' figure [default 'Graphics']
%
% FORMAT SPMid = spm('FnBanner', Fn,FnV)
% Prints a function start banner, for version FnV of function Fn, & datestamps
% FORMAT SPMid = spm('SFnBanner',Fn,FnV)
% Prints a sub-function start banner
% FORMAT SPMid = spm('SSFnBanner',Fn,FnV)
% Prints a sub-sub-function start banner
% Fn - Function name (string)
% FnV - Function version (string)
% SPMid - ID string: [SPMver: Fn (FnV)]
%
% FORMAT SPMdir = spm('Dir',Mfile)
% Returns the directory containing the version of spm in use,
% identified as the first in MATLABPATH containing the Mfile spm (this
% file) (or Mfile if specified).
%
% FORMAT [v,r] = spm('Ver',Mfile,ReDo)
% Returns the current version (v) and release (r) of file Mfile. This
% corresponds to the Last changed Revision number extracted from the
% Subversion Id tag.
% If Mfile is absent or empty then it returns the current SPM version (v)
% and release (r), extracted from the file Contents.m in the SPM directory
% (these information are cached in a persistent variable to enable repeat
% use without recomputation).
% If Redo [default false] is true, then the cached current SPM information
% are not used but recomputed (and recached).
%
% FORMAT ver = spm('Version')
% Returns a string containing SPM version and release numbers.
%
% FORMAT xTB = spm('TBs')
% Identifies installed SPM toolboxes: SPM toolboxes are defined as the
% contents of sub-directories of fullfile(spm('Dir'),'toolbox') - the
% SPM toolbox installation directory. For SPM to pick a toolbox up,
% there must be a single mfile in the directory whose name ends with
% the toolbox directory name. (I.e. A toolbox called "test" would be in
% the "test" subdirectory of spm('Dir'), with a single file named
% *test.m.) This M-file is regarded as the launch file for the
% toolbox.
% xTB - structure array containing toolbox definitions
% xTB.name - name of toolbox (taken as toolbox directory name)
% xTB.prog - launch program for toolbox
% xTB.dir - toolbox directory
%
% FORMAT spm('TBlaunch',xTB,i)
% Launch a toolbox, prepending TBdir to path if necessary
% xTB - toolbox definition structure (i.e. from spm('TBs')
% xTB.name - name of toolbox
% xTB.prog - name of program to launch toolbox
% xTB.dir - toolbox directory (prepended to path if not on path)
%
% FORMAT [v1,v2,...] = spm('GetGlobal',name1,name2,...)
% Returns values of global variables (without declaring them global)
% name1, name2,... - name strings of desired globals
% a1, a2,... - corresponding values of global variables with given names
% ([] is returned as value if global variable doesn't exist)
%
% FORMAT CmdLine = spm('CmdLine',CmdLine)
% Command line SPM usage?
% CmdLine (input) - CmdLine preference
% [defaults (missing or empty) to global defaults.cmdline,]
% [if it exists, or 0 (GUI) otherwise. ]
% CmdLine (output) - true if global CmdLine if true,
% or if on a terminal with no support for graphics windows.
%
% FORMAT spm('PopUpCB',h)
% Callback handler for PopUp UI menus with multiple callbacks as cellstr UserData
%
% FORMAT str = spm('GetUser',fmt)
% Returns current users login name, extracted from the hosting environment
% fmt - format string: If USER is defined then sprintf(fmt,USER) is returned
%
% FORMAT spm('Beep')
% Plays the keyboard beep!
%
% FORMAT spm('time')
% Returns the current time and date as hh:mm dd/mm/yyyy
%
% FORMAT spm('Pointer',Pointer)
% Changes pointer on all SPM (HandleVisible) windows to type Pointer
% Pointer defaults to 'Arrow'. Robust to absence of windows
%
% FORMAT h = spm('alert',Message,Title,CmdLine,wait)
% FORMAT h = spm('alert"',Message,Title,CmdLine,wait)
% FORMAT h = spm('alert*',Message,Title,CmdLine,wait)
% FORMAT h = spm('alert!',Message,Title,CmdLine,wait)
% Displays an alert, either in a GUI msgbox, or as text in the command window.
% ( 'alert"' uses the 'help' msgbox icon, 'alert*' the )
% ( 'error' icon, 'alert!' the 'warn' icon )
% Message - string (or cellstr) containing message to print
% Title - title string for alert
% CmdLine - CmdLine preference [default spm('CmdLine')]
% - If CmdLine is complex, then a CmdLine alert is always used,
% possibly in addition to a msgbox (the latter according
% to spm('CmdLine').)
% wait - if true, waits until user dismisses GUI / confirms text alert
% [default 0] (if doing both GUI & text, waits on GUI alert)
% h - handle of msgbox created, empty if CmdLine used
%
% FORMAT spm('Delete',file)
% Delete file(s), using spm_select and confirmation dialogs.
%
% FORMAT spm('Run',mscript)
% Run M-script(s), using spm_select.
%
% FORMAT spm('Clean')
% Clear all variables, globals, functions, MEX links and class definitions.
%
% FORMAT spm('Help',varargin)
% Merely a gateway to spm_help(varargin) - so you can type "spm help"
%
% FORMAT spm('Quit')
% Quit SPM, delete all windows and clear the command window.
%
%_______________________________________________________________________
%-Parameters
%-----------------------------------------------------------------------
Modalities = {'PET','FMRI','EEG'};
%-Format arguments
%-----------------------------------------------------------------------
if nargin == 0, Action = 'Welcome'; else Action = varargin{1}; end
%=======================================================================
switch lower(Action), case 'welcome' %-Welcome splash screen
%=======================================================================
% spm('Welcome')
spm_check_installation('basic');
defaults = spm('GetGlobal','defaults');
if isfield(defaults,'modality')
spm(defaults.modality);
return
end
%-Open welcome splash screen
%-----------------------------------------------------------------------
spm_Welcome;
%=======================================================================
case 'asciiwelcome' %-ASCII SPM banner welcome
%=======================================================================
% spm('AsciiWelcome')
disp( ' ___ ____ __ __ ');
disp( '/ __)( _ \( \/ ) ');
disp( '\__ \ )___/ ) ( Statistical Parametric Mapping ');
disp(['(___/(__) (_/\/\_) ',spm('Ver'),' - http://www.fil.ion.ucl.ac.uk/spm/']);
fprintf('\n');
%=======================================================================
case lower(Modalities) %-Initialise SPM in PET, fMRI, EEG modality
%=======================================================================
% spm(Modality)
spm_check_installation('basic');
%-Initialisation and workspace canonicalisation
%-----------------------------------------------------------------------
local_clc;
spm('AsciiWelcome');
[SPMver, SPMrev] = spm('Ver');
spm('FnBanner', ['v' SPMrev]);
fprintf('%-40s: %18s', 'Initialising SPM', '');
Modality = upper(Action);
spm_figure('close',allchild(0)); fprintf('.');
%-Load startup global defaults
%-----------------------------------------------------------------------
spm_defaults; fprintf('.');
%-Setup for batch system
%-----------------------------------------------------------------------
spm_jobman('initcfg'); fprintf('.');
%-Draw SPM windows
%-----------------------------------------------------------------------
if ~spm('CmdLine')
Fmenu = spm('CreateMenuWin','off'); fprintf('.');
Finter = spm('CreateIntWin','off'); fprintf('.');
else
Fmenu = [];
Finter = [];
end
Fgraph = spm_figure('Create','Graphics','Graphics','off'); fprintf('.');
spm_figure('WaterMark',Finter,spm('Ver'),'',45);
url = fullfile(spm('Dir'),'help','index.html');
%url = fullfile(spm('Dir'),'README.txt');
spm_help('!Disp',url,'',Fgraph); fprintf('.');
%-Setup for current modality
%-----------------------------------------------------------------------
spm('ChMod',Modality); fprintf('.');
%-Reveal windows
%-----------------------------------------------------------------------
set([Fmenu,Finter,Fgraph],'Visible','on'); fprintf('done\n\n');
%-Print present working directory
%-----------------------------------------------------------------------
fprintf('SPM present working directory:\n\t%s\n',pwd)
%=======================================================================
case 'chmod' %-Change SPM modality PET<->fMRI<->EEG
%=======================================================================
% spm('ChMod',Modality)
%-----------------------------------------------------------------------
%-Sort out arguments
%-----------------------------------------------------------------------
if nargin<2, Modality = ''; else Modality = varargin{2}; end
[Modality,ModNum] = spm('CheckModality',Modality);
%-Sort out global defaults
%-----------------------------------------------------------------------
spm('defaults',Modality);
%-Sort out visibility of appropriate controls on Menu window
%-----------------------------------------------------------------------
Fmenu = spm_figure('FindWin','Menu');
if ~isempty(Fmenu)
if strcmpi(Modality,'PET')
set(findobj(Fmenu, '-regexp', 'Tag', 'FMRI'), 'Visible', 'off');
set(findobj(Fmenu, '-regexp', 'Tag', 'EEG'), 'Visible', 'off');
set(findobj(Fmenu, '-regexp', 'Tag', 'PET'), 'Visible', 'on' );
elseif strcmpi(Modality,'FMRI')
set(findobj(Fmenu, '-regexp', 'Tag', 'EEG'), 'Visible', 'off');
set(findobj(Fmenu, '-regexp', 'Tag', 'PET'), 'Visible', 'off');
set(findobj(Fmenu, '-regexp', 'Tag', 'FMRI'), 'Visible', 'on' );
else
set(findobj(Fmenu, '-regexp', 'Tag', 'PET'), 'Visible', 'off');
set(findobj(Fmenu, '-regexp', 'Tag', 'FMRI'), 'Visible', 'off');
set(findobj(Fmenu, '-regexp', 'Tag', 'EEG'), 'Visible', 'on' );
end
set(findobj(Fmenu,'Tag','Modality'),'Value',ModNum,'UserData',ModNum);
else
warning('SPM Menu window not found');
end
%=======================================================================
case 'defaults' %-Set SPM defaults (as global variable)
%=======================================================================
% spm('defaults',Modality)
%-----------------------------------------------------------------------
if nargin<2, Modality=''; else Modality=varargin{2}; end
Modality = spm('CheckModality',Modality);
%-Re-initialise, load defaults (from spm_defaults.m) and store modality
%-----------------------------------------------------------------------
clear global defaults
spm_get_defaults('modality',Modality);
%-Addpath modality-specific toolboxes
%-----------------------------------------------------------------------
if strcmpi(Modality,'EEG')
if ~isdeployed
addpath(fullfile(spm('Dir'),'external','fieldtrip'));
end
clear ft_defaults
clear global ft_default
ft_defaults;
global ft_default
ft_default.trackcallinfo = 'no';
ft_default.showcallinfo = 'no';
if ~isdeployed
addpath(...
fullfile(spm('Dir'),'external','bemcp'),...
fullfile(spm('Dir'),'external','ctf'),...
fullfile(spm('Dir'),'external','eeprobe'),...
fullfile(spm('Dir'),'external','mne'),...
fullfile(spm('Dir'),'external','yokogawa_meg_reader'),...
fullfile(spm('Dir'),'toolbox', 'dcm_meeg'),...
fullfile(spm('Dir'),'toolbox', 'spectral'),...
fullfile(spm('Dir'),'toolbox', 'Neural_Models'),...
fullfile(spm('Dir'),'toolbox', 'MEEGtools'));
end
end
%-Turn output pagination off in Octave
%-----------------------------------------------------------------------
if strcmpi(spm_check_version,'octave')
try
more('off');
page_screen_output(false);
page_output_immediately(true);
end
end
%-Return defaults variable if asked
%-----------------------------------------------------------------------
if nargout, varargout = {spm_get_defaults}; end
%=======================================================================
case 'checkmodality' %-Check & canonicalise modality string
%=======================================================================
% [Modality,ModNum] = spm('CheckModality',Modality)
%-----------------------------------------------------------------------
if nargin<2, Modality=''; else Modality=upper(varargin{2}); end
if isempty(Modality)
try
Modality = spm_get_defaults('modality');
end
end
if ischar(Modality)
ModNum = find(ismember(Modalities,Modality));
else
if ~any(Modality == 1:length(Modalities))
Modality = 'ERROR';
ModNum = [];
else
ModNum = Modality;
Modality = Modalities{ModNum};
end
end
if isempty(ModNum)
if isempty(Modality)
fprintf('Modality is not set: use spm(''defaults'',''MOD''); ');
fprintf('where MOD is one of PET, FMRI, EEG.\n');
end
error('Unknown Modality.');
end
varargout = {upper(Modality),ModNum};
%=======================================================================
case 'createmenuwin' %-Create SPM menu window
%=======================================================================
% Fmenu = spm('CreateMenuWin',Vis)
%-----------------------------------------------------------------------
if nargin<2, Vis='on'; else Vis=varargin{2}; end
%-Close any existing 'Menu' 'Tag'ged windows
%-----------------------------------------------------------------------
delete(spm_figure('FindWin','Menu'))
Fmenu = openfig(fullfile(spm('Dir'),'spm_Menu.fig'),'new','invisible');
set(Fmenu,'name',[spm('Version') ': Menu']);
S0 = spm('WinSize','0',1);
SM = spm('WinSize','M');
set(Fmenu,'Units','pixels', 'Position',[S0(1) S0(2) 0 0] + SM);
%-Set SPM colour
%-----------------------------------------------------------------------
set(findobj(Fmenu,'Tag', 'frame'),'backgroundColor',spm('colour'));
set(Fmenu,'Color',[1 1 1]*.8);
if ismac
set(findobj(Fmenu,'UserData','LABEL'),'Visible','off','Tag','');
end
%-Set Utils
%-----------------------------------------------------------------------
set(findobj(Fmenu,'Tag', 'Utils'), 'String',{'Utils...',...
'CD',...
'PWD',...
'Run M-file',...
'Load MAT-file',...
'Save MAT-file',...
'Delete files',...
'Show SPM',...
'Show MATLAB'});
set(findobj(Fmenu,'Tag', 'Utils'), 'UserData',{...
['spm(''FnBanner'',''CD'');' ...
'cd(spm_select(1,''dir'',''Select new working directory''));' ...
'spm(''alert"'',{''New working directory:'',['' '',pwd]},''CD'',1);'],...
['spm(''FnBanner'',''PWD'');' ...
'spm(''alert"'',{''Present working directory:'',['' '',pwd]},''PWD'',1);'],...
['spm(''FnBanner'',''Run M-file'');' ...
'spm(''Run'');' ...
'fprintf(''%-40s: %30s\n'',''Completed'',spm(''time''));'],...
['spm(''FnBanner'',''Load MAT-file'');' ...
'load(spm_select(1,''mat'',''Select MAT-file''));'],...
['spm(''FnBanner'',''Save MAT-file'');' ...
'save(spm_input(''Output filename'',1,''s''), spm_get_defaults(''mat.format''));'],...
['spm(''FnBanner'',''Delete files'');' ...
'spm(''Delete'');'],...
['spm(''FnBanner'',''Show SPM'');' ...
'spm(''Show'');'],...
['spm(''FnBanner'',''Show Command Window'');' ...
'commandwindow;']});
%-Set Toolboxes
%-----------------------------------------------------------------------
xTB = spm('tbs');
if ~isempty(xTB)
set(findobj(Fmenu,'Tag', 'Toolbox'),'String',{'Toolbox:' xTB.name });
set(findobj(Fmenu,'Tag', 'Toolbox'),'UserData',xTB);
else
set(findobj(Fmenu,'Tag', 'Toolbox'),'Visible','off')
end
set(Fmenu,'Visible',Vis);
varargout = {Fmenu};
%=======================================================================
case 'createintwin' %-Create SPM interactive window
%=======================================================================
% Finter = spm('CreateIntWin',Vis)
%-----------------------------------------------------------------------
if nargin<2, Vis='on'; else Vis=varargin{2}; end
%-Close any existing 'Interactive' 'Tag'ged windows
%-----------------------------------------------------------------------
delete(spm_figure('FindWin','Interactive'))
%-Create SPM Interactive window
%-----------------------------------------------------------------------
FS = spm('FontSizes');
PF = spm_platform('fonts');
S0 = spm('WinSize','0',1);
SI = spm('WinSize','I');
Finter = figure('IntegerHandle','off',...
'Tag','Interactive',...
'Name',spm('Version'),...
'NumberTitle','off',...
'Units','pixels',...
'Position',[S0(1) S0(2) 0 0] + SI,...
'Resize','on',...
'Color',[1 1 1]*.8,...
'MenuBar','none',...
'DefaultTextFontName',PF.helvetica,...
'DefaultTextFontSize',FS(10),...
'DefaultAxesFontName',PF.helvetica,...
'DefaultUicontrolBackgroundColor',[1 1 1]*.7,...
'DefaultUicontrolFontName',PF.helvetica,...
'DefaultUicontrolFontSize',FS(10),...
'DefaultUicontrolInterruptible','on',...
'Renderer','painters',...
'Visible',Vis);
varargout = {Finter};
%=======================================================================
case 'fnuisetup' %-Robust UI setup for main SPM functions
%=======================================================================
% [Finter,Fgraph,CmdLine] = spm('FnUIsetup',Iname,bGX,CmdLine)
%-----------------------------------------------------------------------
if nargin<4, CmdLine=spm('CmdLine'); else CmdLine=varargin{4}; end
if nargin<3, bGX=1; else bGX=varargin{3}; end
if nargin<2, Iname=''; else Iname=varargin{2}; end
if CmdLine
Finter = spm_figure('FindWin','Interactive');
if ~isempty(Finter), spm_figure('Clear',Finter), end
%if ~isempty(Iname), fprintf('%s:\n',Iname), end
else
Finter = spm_figure('GetWin','Interactive');
spm_figure('Clear',Finter)
if ~isempty(Iname)
str = sprintf('%s: %s',spm('Version'),Iname);
else
str = '';
end
set(Finter,'Name',str)
end
if bGX
Fgraph = spm_figure('GetWin','Graphics');
spm_figure('Clear',Fgraph)
else
Fgraph = spm_figure('FindWin','Graphics');
end
varargout = {Finter,Fgraph,CmdLine};
%=======================================================================
case 'winscale' %-Window scale factors (to fit display)
%=======================================================================
% WS = spm('WinScale')
%-----------------------------------------------------------------------
S0 = spm('WinSize','0',1);
if all(ismember(S0(:),[0 1]))
varargout = {[1 1 1 1]};
return;
end
B = 50; % taskbar size
if ispc && isequal(S0,[1 1 1366 768])
B = 80;
elseif ismac
B = 110; % average size bottom Dock
end
tmp = [S0(3)/1152 (S0(4)-B)/900];
varargout = {min(tmp)*[1 1 1 1]};
% Make sure that aspect ratio is about right - for funny shaped screens
% varargout = {[S0(3)/1152 (S0(4)-B)/900 S0(3)/1152 (S0(4)-B)/900]};
%=======================================================================
case {'fontsize','fontsizes','fontscale'} %-Font scaling
%=======================================================================
% [FS,sf] = spm('FontSize',FS)
% [FS,sf] = spm('FontSizes',FS)
% sf = spm('FontScale')
%-----------------------------------------------------------------------
if nargin<2, FS=1:36; else FS=varargin{2}; end
offset = 1;
%try, if ismac, offset = 1.4; end; end
sf = offset + 0.85*(min(spm('WinScale'))-1);
if strcmpi(Action,'fontscale')
varargout = {sf};
else
varargout = {ceil(FS*sf),sf};
end
%=======================================================================
case 'winsize' %-Standard SPM window locations and sizes
%=======================================================================
% Rect = spm('WinSize',Win,raw)
%-----------------------------------------------------------------------
if nargin<3, raw=0; else raw=1; end
if nargin<2, Win=''; else Win=varargin{2}; end
Rect = [[108 466 400 445];...
[108 045 400 395];...
[515 015 600 865];...
[326 310 500 280]];
if isempty(Win)
%-All windows
elseif upper(Win(1))=='M'
%-Menu window
Rect = Rect(1,:);
elseif upper(Win(1))=='I'
%-Interactive window
Rect = Rect(2,:);
elseif upper(Win(1))=='G'
%-Graphics window
Rect = Rect(3,:);
elseif upper(Win(1))=='W'
%-Welcome window
Rect = Rect(4,:);
elseif Win(1)=='0'
units = get(0,'Units');
set(0,'Units','pixels');
%-Root workspace
if strcmpi(spm_check_version,'octave')
Rect = get(0, 'ScreenSize');
else
Rect = get(0, 'MonitorPositions');
end
if all(ismember(Rect(:),[0 1]))
warning('SPM:noDisplay','Unable to open display.');
end
if size(Rect,1) > 1 % Multiple Monitors
%-The MonitorPositions property depends on the architecture
if ~ispc || spm_check_version('matlab','8.4') >= 0
Rect(:,[3 4]) = Rect(:,[3 4]) + Rect(:,[1 2]);
end
monitor = spm_get_defaults('ui.monitor');
if isnan(monitor)
%-Use Monitor containing the Pointer
pl = get(0,'PointerLocation');
w = find(pl(1)>=Rect(:,1) & pl(1)<=Rect(:,3));
if numel(w) > 1, Rect = Rect(w,:); end
if numel(w)~=1
w = find(pl(2)>=Rect(:,2) & pl(2)<=Rect(:,4));
end
if numel(w)~=1
if ispc
w = size(Rect,1);
else
w = 1;
end
end
else
if ispc
w = size(Rect,1) - monitor + 1;
else
w = monitor;
end
end
Rect = Rect(w,:);
%-Make sure that the format is [x y width height]
Rect(1,[3 4]) = Rect(1,[3 4]) - Rect(1,[1 2]) + 1;
end
set(0,'Units',units);
else
error('Unknown Win type');
end
if ~raw
WS = repmat(spm('WinScale'),size(Rect,1),1);
Rect = Rect.*WS;
end
varargout = {Rect};
%=======================================================================
case 'colour' %-SPM interface colour
%=======================================================================
% spm('Colour')
%-----------------------------------------------------------------------
%-Pre-developmental livery
% varargout = {[1.0,0.2,0.3],'fightening red'};
%-Developmental livery
% varargout = {[0.7,1.0,0.7],'flourescent green'};
%-Alpha release livery
% varargout = {[0.9,0.9,0.5],'over-ripe banana'};
%-Beta release livery
% varargout = {[0.9 0.8 0.9],'blackcurrant purple'};
%-Distribution livery
varargout = {[0.8 0.8 1.0],'vile violet'};
try
varargout = {spm_get_defaults('ui.colour'),'bluish'};
end
%=======================================================================
case 'figname' %-Robust SPM figure naming
%=======================================================================
% F = spm('FigName',Iname,F,CmdLine)
%-----------------------------------------------------------------------
if nargin<4, CmdLine=spm('CmdLine'); else CmdLine=varargin{4}; end
if nargin<3, F='Interactive'; else F=varargin{3}; end
if nargin<2, Iname=''; else Iname=varargin{2}; end
if CmdLine, varargout={[]}; return, end
F = spm_figure('FindWin',F);
if isempty(Iname), Iname = get(F,'Tag'); end
if ~isempty(F) && ~isempty(Iname)
set(F,'Name',sprintf('%s: %s',spm('Version'),Iname))
end
varargout={F};
%=======================================================================
case 'show' %-Bring visible MATLAB windows to the fore
%=======================================================================
% Fs = spm('Show')
%-----------------------------------------------------------------------
cF = get(0,'CurrentFigure');
Fs = get(0,'Children');
Fs = findobj(Fs,'flat','Visible','on');
for F=Fs(:)', figure(F), end
try, figure(cF), set(0,'CurrentFigure',cF); end
varargout={Fs};
%=======================================================================
case 'clear' %-Clear SPM GUI
%=======================================================================
% spm('Clear',Finter, Fgraph)
%-----------------------------------------------------------------------
if nargin<3, Fgraph='Graphics'; else Fgraph=varargin{3}; end
if nargin<2, Finter='Interactive'; else Finter=varargin{2}; end
spm_figure('Clear',Fgraph)
spm_figure('Clear',Finter)
spm('Pointer','Arrow')
spm_conman('Initialise','reset');
local_clc;
fprintf('\n');
%evalin('base','clear')
%=======================================================================
case {'fnbanner','sfnbanner','ssfnbanner'} %-Text banners for functions
%=======================================================================
% SPMid = spm('FnBanner', Fn,FnV)
% SPMid = spm('SFnBanner',Fn,FnV)
% SPMid = spm('SSFnBanner',Fn,FnV)
%-----------------------------------------------------------------------
time = spm('time');
str = spm('Ver');
if nargin>=2, str = [str,': ',varargin{2}]; end
if nargin>=3
v = regexp(varargin{3},'\$Rev: (\d*) \$','tokens','once');
if ~isempty(v)
str = [str,' (v',v{1},')'];
else
str = [str,' (v',varargin{3},')'];
end
end
switch lower(Action)
case 'fnbanner'
tab = '';
wid = 72;
lch = '=';
case 'sfnbanner'
tab = sprintf('\t');
wid = 72-8;
lch = '-';
case 'ssfnbanner'
tab = sprintf('\t\t');
wid = 72-2*8;
lch = '-';
end
fprintf('\n%s%s',tab,str)
fprintf('%s',repmat(' ',1,wid-length([str,time])))
fprintf('%s\n%s',time,tab)
fprintf('%s',repmat(lch,1,wid)),fprintf('\n')
varargout = {str};
%=======================================================================
case 'dir' %-Identify specific (SPM) directory
%=======================================================================
% spm('Dir',Mfile)
%-----------------------------------------------------------------------
if nargin<2, Mfile='spm'; else Mfile=varargin{2}; end
SPMdir = which(Mfile);
if isempty(SPMdir) %-Not found or full pathname given
if exist(Mfile,'file')==2 %-Full pathname
SPMdir = Mfile;
else
error(['Can''t find ',Mfile,' on MATLABPATH']);
end
end
SPMdir = fileparts(SPMdir);
varargout = {SPMdir};
%=======================================================================
case 'ver' %-SPM version
%=======================================================================
% [SPMver, SPMrel] = spm('Ver',Mfile,ReDo)
%-----------------------------------------------------------------------
if nargin > 3, error('Too many input arguments.'); end
if nargin ~= 3, ReDo = false; else ReDo = logical(varargin{3}); end
if nargin == 1 || (nargin > 1 && isempty(varargin{2}))
Mfile = '';
else
Mfile = which(varargin{2});
if isempty(Mfile)
error('Can''t find %s on MATLABPATH.',varargin{2});
end
end
v = spm_version(ReDo);
if isempty(Mfile)
varargout = {v.Release, v.Version};
else
unknown = struct('file',Mfile,'id','???','date','','author','');
if ~isdeployed
fp = fopen(Mfile,'rt');
if fp == -1, error('Can''t read %s.',Mfile); end
str = fread(fp,Inf,'*uchar');
fclose(fp);
str = char(str(:)');
r = regexp(str,['\$Id: (?<file>\S+) (?<id>[0-9]+) (?<date>\S+) ' ...
'(\S+Z) (?<author>\S+) \$'],'names','once');
if isempty(r), r = unknown; end
else
r = unknown;
end
varargout = {r(1).id v.Release};
end
%=======================================================================
case 'version' %-SPM version
%=======================================================================
% v = spm('Version')
%-----------------------------------------------------------------------
[v, r] = spm('Ver');
varargout = {sprintf('%s (%s)',v,r)};
%=======================================================================
case 'mlver' %-MATLAB major & point version number
%=======================================================================
% v = spm('MLver')
%-----------------------------------------------------------------------
warning('spm(''MLver'') is deprecated. Use spm_check_version instead.');
v = version; tmp = find(v=='.');
if length(tmp)>1, varargout={v(1:tmp(2)-1)}; end
%=======================================================================
case 'tbs' %-Identify installed toolboxes
%=======================================================================
% xTB = spm('TBs')
%-----------------------------------------------------------------------
xTB = [];
% Toolbox directory
%-----------------------------------------------------------------------
try
Tdir = spm_get_defaults('tbx.dir');
catch
Tdir = { fullfile(spm('Dir'),'toolbox') };
end
for i=1:numel(Tdir)
%-List of potential installed toolboxes directories
%-------------------------------------------------------------------
if exist(Tdir{i},'dir')
d = dir(Tdir{i});
d = {d([d.isdir]).name};
d = {d{cellfun('isempty',regexp(d,'^\.'))}};
else
d = {};
end
%-Look for a "main" M-file in each potential directory
%-------------------------------------------------------------------
for j = 1:length(d)
tdir = fullfile(Tdir{i},d{j});
fn = cellstr(spm_select('List',tdir,['^.*' d{j} '\.m$']));
if ~isempty(fn{1})
xTB(end+1).name = strrep(d{j},'_','');
xTB(end).prog = spm_file(fn{1},'basename');
xTB(end).dir = tdir;
end
end
end
varargout{1} = xTB;
%=======================================================================
case 'tblaunch' %-Launch an SPM toolbox
%=======================================================================
% xTB = spm('TBlaunch',xTB,i)
%-----------------------------------------------------------------------
if nargin < 3, i = 1; else i = varargin{3}; end
if nargin < 2, xTB = spm('TBs'); else xTB = varargin{2}; end
if i == 0
spm_toolbox;
else
%-Addpath (& report)
%-------------------------------------------------------------------
if isempty(strfind(path,xTB(i).dir))