http://rosalind.info/problems/prot/
Write a Python program called prot.py that takes a sequence of RNA as a single position argument and prints the protein translation.
$ ./prot.py AUGGCCAUGGCGCCCAGAACUGAGAUCAAUAGUACCCGUAUUAACGGGUGA
MAMAPRTEINSTRING
The program should print a "usage" statement for -h or --help flags:
$ ./prot.py -h
usage: prot.py [-h] RNA
Translate RNA to proteins
positional arguments:
RNA RNA sequence
optional arguments:
-h, --help show this help message and exit
A passing test suite looks like this:
$ make test
python3 -m pytest -xv --disable-pytest-warnings --flake8 --pylint
--mypy prot.py tests/prot_test.py
============================= test session starts ==============================
platform darwin -- Python 3.9.1, pytest-6.1.2, py-1.9.0, pluggy-0.13.1 -- /Library/Frameworks/Python.framework/Versions/3.9/bin/python3
cachedir: .pytest_cache
rootdir: /Users/kyclark/work/bio/code/07_prot
plugins: mypy-0.7.0, flake8-1.0.6, pylint-0.17.0
collected 9 items
prot.py::FLAKE8 SKIPPED [ 10%]
prot.py::mypy PASSED [ 20%]
tests/prot_test.py::FLAKE8 SKIPPED [ 30%]
tests/prot_test.py::mypy PASSED [ 40%]
tests/prot_test.py::test_exists PASSED [ 50%]
tests/prot_test.py::test_usage PASSED [ 60%]
tests/prot_test.py::test_input1 PASSED [ 70%]
tests/prot_test.py::test_stop_codon PASSED [ 80%]
tests/prot_test.py::test_input2 PASSED [ 90%]
::mypy PASSED [100%]
===================================== mypy =====================================
Success: no issues found in 2 source files
========================= 8 passed, 2 skipped in 1.72s =========================
Ken Youens-Clark [email protected]