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Commits on Apr 16, 2024

• Merge pull request #194 from gekkonid/py311

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  ryanlayer

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Commits on Jan 9, 2024

• Update samplot/samplot.py

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  pontushojer

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Commits on Jan 8, 2024

• fixes for python 3.11

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  kdm9

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Commits on Dec 2, 2023

• Merge pull request #193 from pontushojer/warn-missing-samples

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  ryanlayer

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• Merge pull request #192 from pontushojer/fix-189

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  ryanlayer

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• Merge pull request #191 from pontushojer/fix-188

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  ryanlayer

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Commits on Nov 27, 2023

• warn if missing samples in BAMs or VCF

  pontushojer

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Commits on Nov 24, 2023

• enable dysgu translocations

  pontushojer

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Commits on Nov 22, 2023

• temporary fix #189 by limiting matplotlib to <3.7

  pontushojer

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• fix bug where 2nd breakpoint position not in INFO/END for interchromosomal translocations

  pontushojer

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Commits on Nov 20, 2023

• fix missing space in template for translocations

  pontushojer

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Commits on Nov 13, 2023

• Add parenthesis

  pontushojer

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Commits on Nov 10, 2023

• fix translocation handling and add log messages

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Commits on Aug 31, 2023

• Merge pull request #184 from pontushojer/fix-tests

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  ryanlayer

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Commits on May 29, 2023

• Remove np.int depreciated in numpy 1.24.0

  pontushojer

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Commits on May 28, 2023

• Merge pull request #183 from pontushojer/jitter-long

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  ryanlayer

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• Merge pull request #182 from pontushojer/fix-171

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  ryanlayer

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• Merge pull request #179 from pontushojer/coverage-speedup

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  ryanlayer

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• Merge pull request #178 from pontushojer/variants-stats

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  ryanlayer

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• Merge pull request #177 from pontushojer/master

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  ryanlayer

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• Use same offset at both ends of bent line and make the line bends up for large jitter_bounds.

  pontushojer

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• simplify curr_max_insert_size update

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• Enable --jitter for long reads

  pontushojer

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• fix Missing legend (?) #171. Only include legends for read types that appear in the plot.

  pontushojer

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• fix Missing legend (?) #171. Only include legends for read types that appear in the plot.

  pontushojer

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Commits on May 16, 2023

• speed up read coverage collection

  pontushojer

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Commits on May 15, 2023

• add info about how many variants are filtered out.

  pontushojer

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• fix string formatting

  pontushojer

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• Exit if no samples in VCF match sample in BAMs or those specified using --sample_ids.

  pontushojer

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• Merge branch 'master' of https://github.com/pontushojer/samplot

  pontushojer

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• use logger for messages

  pontushojer

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Commits on Nov 21, 2022

• Merge pull request #169 from pontushojer/missing-img-error

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Commits on Nov 10, 2022

• Show a popup error when an image is missing

  pontushojer

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Commits on Nov 6, 2022

• fix tests and chr prefix strip (#168)

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  jbelyeu

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Commits on May 12, 2022

• Merge pull request #157 from pontushojer/names-missing

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  ryanlayer

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