Commits

Branch selector

 main

User selector

All users

Datepicker

All time

Commit History

Commits on Jan 4, 2022

• added liftover to project.py and finished script to produce output. shared memory still doesn't work as desired.

  

  tobiaszehnder

  committed
  98a5831

  Copy full SHA for 98a5831

Commits on Jan 3, 2022

• reduce size of pairwise alignment collection pickles by using numeric chromosome names and a dictionary for later conversion

  

  tobiaszehnder

  committed
  26c30db

  Copy full SHA for 26c30db

• split NC class into NC- and NC+

  

  tobiaszehnder

  committed
  5d51ac8

  Copy full SHA for 5d51ac8

• new python script with multiprocessing and shared memory

  

  tobiaszehnder

  committed
  5fc4151

  Copy full SHA for 5fc4151

Commits on Nov 29, 2021

• Added option to pass list/file of targets to compute_pairwise_alignments

  

  tobiaszehnder

  committed
  12f726a

  Copy full SHA for 12f726a

• Using tbl files from ungapped chain blocks instead of axtNet.

  

  tobiaszehnder

  committed
  5bde6c6

  Copy full SHA for 5bde6c6

Commits on Nov 22, 2021

• added script to convert chains to tables containing ref/qry coordinates of ungapped alignment blocks

  

  tobiaszehnder

  committed
  d0e22c6

  Copy full SHA for d0e22c6

Commits on Sep 16, 2021

• added UCSC to chain search

  

  tobiaszehnder

  committed
  0cb3283

  Copy full SHA for 0cb3283

• added scripts and fixed several bugs

  

  tobiaszehnder

  committed
  99c94b1

  Copy full SHA for 99c94b1

Commits on Sep 15, 2021

• initial commit

  

  tobiaszehnder

  committed
  8966e07

  Copy full SHA for 8966e07